Wall clock time and date at job start Tue Mar 31 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.64046 * 2 1 4 4 C 1.54316 * 110.72327 * 123.14440 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 C 1.36933 * 125.65326 * 180.79632 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00564 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99514 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47103 * 60.00082 * 10 8 6 12 12 H 1.48502 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47083 * 299.99999 * 10 8 6 14 14 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 15 15 C 1.54910 * 104.83231 * 335.87083 * 14 5 4 16 16 H 1.09002 * 111.00267 * 155.08153 * 15 14 5 17 17 N 1.46496 * 111.03806 * 278.91717 * 15 14 5 18 18 C 1.34770 * 120.00229 * 267.21591 * 17 15 14 19 19 O 1.21571 * 120.00157 * 359.97438 * 18 17 15 20 20 C 1.47717 * 119.99953 * 180.02562 * 18 17 15 21 21 C 1.40260 * 119.88267 * 359.72881 * 20 18 17 22 22 C 1.36158 * 120.55710 * 179.73376 * 21 20 18 23 23 C 1.39914 * 119.97483 * 0.51754 * 22 21 20 24 24 N 1.34757 * 134.58471 * 179.76059 * 23 22 21 25 25 N 1.28645 * 109.28593 * 180.02562 * 24 23 22 26 26 N 1.28813 * 111.79312 * 359.97438 * 25 24 23 27 27 H 0.97005 * 125.93811 * 180.02562 * 26 25 24 28 28 C 1.37363 * 108.11797 * 359.97438 * 26 25 24 29 29 C 1.38613 * 134.89222 * 180.02562 * 28 26 25 30 30 H 1.09003 * 109.47103 * 298.30580 * 1 2 3 31 31 H 1.09000 * 109.47385 * 58.30874 * 1 2 3 32 32 H 1.09004 * 109.47258 * 178.30986 * 1 2 3 33 33 H 1.08998 * 109.46762 * 181.68782 * 3 2 1 34 34 H 1.08993 * 109.47001 * 301.69203 * 3 2 1 35 35 H 1.09008 * 109.46751 * 61.69343 * 3 2 1 36 36 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 37 37 H 1.08996 * 110.01243 * 260.04843 * 4 2 1 38 38 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 39 39 H 1.09001 * 110.36478 * 94.71036 * 14 5 4 40 40 H 1.08998 * 110.36859 * 217.03414 * 14 5 4 41 41 H 0.97001 * 119.99335 * 87.21561 * 17 15 14 42 42 H 1.08001 * 119.71577 * 359.97438 * 21 20 18 43 43 H 1.08001 * 120.01326 * 180.25208 * 22 21 20 44 44 H 1.08005 * 120.24636 * 359.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 4.0070 -2.3910 1.5066 7 1 3.7666 -2.5396 2.5491 8 6 5.0895 -3.0524 0.9429 9 7 5.3827 -2.8709 -0.3273 10 14 6.1300 -4.1998 1.9869 11 1 5.2784 -5.2940 2.5187 12 1 7.2158 -4.7780 1.1551 13 1 6.7226 -3.4400 3.1169 14 6 3.4632 -1.2509 -0.6856 15 6 2.0789 -0.7974 -1.2125 16 1 2.1849 -0.1552 -2.0869 17 7 1.2266 -1.9508 -1.5119 18 6 1.2021 -2.4654 -2.7572 19 8 1.8870 -1.9724 -3.6323 20 6 0.3423 -3.6280 -3.0591 21 6 -0.4433 -4.1978 -2.0465 22 6 -1.2449 -5.2662 -2.3109 23 6 -1.2811 -5.8112 -3.5990 24 7 -1.9406 -6.8359 -4.1744 25 7 -1.6066 -6.9134 -5.4143 26 7 -0.7541 -6.0035 -5.7377 27 1 -0.3658 -5.8738 -6.6171 28 6 -0.4914 -5.2480 -4.6210 29 6 0.3177 -4.1565 -4.3463 30 1 -0.3633 0.4873 0.9048 31 1 -0.3634 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 3.1586 1.4097 -0.0303 34 1 1.6922 1.9621 -0.8744 35 1 1.7413 1.9436 0.9049 36 1 1.3130 -1.4733 1.5799 37 1 2.3735 -0.1010 1.9997 38 1 6.1393 -3.3327 -0.7212 39 1 4.1931 -0.4491 -0.7978 40 1 3.7959 -2.1445 -1.2135 41 1 0.6799 -2.3439 -0.8137 42 1 -0.4151 -3.7832 -1.0497 43 1 -1.8493 -5.6956 -1.5255 44 1 0.9263 -3.7208 -5.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977568197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:46 Heat of formation + Delta-G solvation = 106.781595 kcal Electronic energy + Delta-G solvation = -28355.100773 eV Core-core repulsion = 24503.337718 eV Total energy + Delta-G solvation = -3851.763055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.39714 -40.05074 -38.44503 -37.14935 -34.06936 -33.90167 -33.20404 -30.89734 -30.70763 -30.62984 -28.17763 -26.90910 -25.65691 -24.91396 -23.61760 -23.26208 -22.60580 -20.94230 -20.06215 -19.04167 -18.59043 -18.11334 -16.75733 -16.71066 -16.45311 -16.01456 -15.12765 -14.79164 -14.50645 -14.29879 -14.13225 -13.82069 -13.77876 -13.32669 -13.22223 -12.79413 -12.40178 -12.36806 -12.14204 -12.02512 -11.94956 -11.77695 -11.42472 -11.32618 -11.19961 -11.02750 -10.97098 -10.78758 -10.45517 -10.25172 -10.02478 -9.86328 -9.71840 -9.66585 -9.20711 -8.72552 -8.65227 -8.40382 -6.84646 -5.66064 -3.09079 0.17501 0.98231 1.96265 2.25223 2.95361 3.38510 3.40937 3.43392 3.45005 3.75154 3.80486 4.38168 4.46616 4.68542 4.70291 4.85860 4.92579 4.95881 5.15852 5.21825 5.25230 5.49680 5.58364 5.64092 5.75895 5.77302 5.84724 5.95842 5.99929 6.05255 6.07383 6.14763 6.22144 6.33020 6.37397 6.45666 6.53857 6.56293 6.65583 6.68299 6.92429 7.43592 7.59322 7.81119 7.91350 8.01912 8.35238 8.52686 9.19169 9.80825 10.44443 11.36603 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.003822 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.362381 B = 7324.899202 C = 8673.963078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.690 5.690 18 C 0.558 3.442 19 O -0.538 6.538 20 C -0.087 4.087 21 C -0.086 4.086 22 C -0.055 4.055 23 C 0.024 3.976 24 N -0.253 5.253 25 N -0.014 5.014 26 N -0.413 5.413 27 H 0.454 0.546 28 C 0.019 3.981 29 C -0.040 4.040 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.113 0.887 41 H 0.398 0.602 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 1.075 -6.551 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.017 3.983 16 H 0.109 0.891 17 N -0.340 5.340 18 C 0.344 3.656 19 O -0.417 6.417 20 C -0.094 4.094 21 C -0.108 4.108 22 C -0.077 4.077 23 C -0.101 4.101 24 N -0.129 5.129 25 N 0.004 4.996 26 N -0.142 5.142 27 H 0.301 0.699 28 C -0.101 4.101 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.131 0.869 41 H 0.234 0.766 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.089 0.084 -7.586 16.002 hybrid contribution 1.322 0.116 0.698 1.499 sum -12.767 0.200 -6.888 14.508 Atomic orbital electron populations 1.21727 0.94579 1.01216 1.01376 1.21849 0.94884 0.95772 0.96352 1.21689 1.01929 0.94051 1.00949 1.21418 0.90304 0.93014 0.93661 1.44456 1.30590 1.50432 1.07210 1.18982 1.06465 1.17297 0.92717 0.90588 1.24771 0.98701 1.00538 0.96306 1.69780 1.29990 1.46058 1.10741 0.86202 0.79899 0.80632 0.79029 1.21196 1.21632 1.21241 1.22325 0.89087 1.01440 0.85146 1.22578 0.93207 0.85910 0.96569 0.89150 1.45698 1.45349 1.32769 1.10179 1.17872 0.81845 0.82847 0.83075 1.90772 1.43136 1.61270 1.46496 1.19922 0.98673 0.97451 0.93361 1.20961 0.94940 0.95613 0.99246 1.19916 0.99156 0.95368 0.93229 1.20073 0.98282 0.95928 0.95832 1.75360 1.21483 1.17211 0.98830 1.77951 1.02940 1.08435 1.10265 1.44845 1.34000 1.23118 1.12250 0.69931 1.19648 1.03545 0.98854 0.88010 1.20084 0.96500 0.92340 0.97354 0.92653 0.92783 0.92976 0.91753 0.93070 0.92627 0.96040 0.95799 0.93639 0.96057 0.86913 0.76618 0.84065 0.83727 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.15 37.16 0.30 -1.28 16 2 C -0.09 -1.35 0.80 -152.68 -0.12 -1.47 16 3 C -0.13 -1.83 8.44 37.16 0.31 -1.52 16 4 C 0.14 2.68 6.41 -3.07 -0.02 2.66 16 5 N -0.60 -14.32 3.39 -170.07 -0.58 -14.89 16 6 C -0.23 -6.04 10.27 -15.06 -0.15 -6.19 16 7 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 10 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.15 3.40 5.27 -2.53 -0.01 3.39 16 15 C 0.12 2.21 2.67 -65.78 -0.18 2.03 16 16 H 0.09 1.66 7.44 -51.93 -0.39 1.28 16 17 N -0.69 -11.13 4.46 -52.71 -0.24 -11.37 16 18 C 0.56 9.31 7.77 -12.39 -0.10 9.21 16 19 O -0.54 -10.70 15.96 5.30 0.08 -10.61 16 20 C -0.09 -1.18 5.88 -104.92 -0.62 -1.80 16 21 C -0.09 -0.98 9.46 -39.57 -0.37 -1.36 16 22 C -0.05 -0.60 10.03 -39.70 -0.40 -1.00 16 23 C 0.02 0.31 7.36 -84.95 -0.62 -0.31 16 24 N -0.25 -3.46 12.42 32.09 0.40 -3.06 16 25 N -0.01 -0.17 13.28 60.35 0.80 0.63 16 26 N -0.41 -4.01 7.08 32.31 0.23 -3.78 16 27 H 0.45 2.49 8.96 -190.23 -1.71 0.78 16 28 C 0.02 0.23 7.40 -84.24 -0.62 -0.40 16 29 C -0.04 -0.50 9.61 -39.10 -0.38 -0.87 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 33 H 0.06 1.05 7.47 -51.93 -0.39 0.66 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.02 0.39 7.82 -51.93 -0.41 -0.01 16 37 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.54 7.73 -51.93 -0.40 0.14 16 40 H 0.11 3.09 5.87 -51.93 -0.30 2.78 16 41 H 0.40 5.64 5.12 -40.82 -0.21 5.43 16 42 H 0.14 1.35 6.36 -52.49 -0.33 1.02 16 43 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.15 1.71 7.63 -52.48 -0.40 1.31 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -33.15 357.92 -8.37 -41.52 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.93 Total: 4.49 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.07 Total: 0.81 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 1.18 Total: -58.33 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.15 -8.37 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977568197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.302 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds