Wall clock time and date at job start Tue Mar 31 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.91710 * 2 1 4 4 C 1.54912 * 111.00325 * 123.90081 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21571 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.47718 * 119.99898 * 179.97438 * 18 17 15 21 21 C 1.40255 * 119.88137 * 359.72645 * 20 18 17 22 22 C 1.36160 * 120.55893 * 179.72983 * 21 20 18 23 23 C 1.39907 * 119.97552 * 0.52513 * 22 21 20 24 24 N 1.34749 * 134.59288 * 179.75671 * 23 22 21 25 25 N 1.28647 * 109.29574 * 179.97438 * 24 23 22 26 26 N 1.28809 * 111.79044 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.94460 * 179.97438 * 26 25 24 28 28 C 1.37370 * 108.11503 * 359.97438 * 26 25 24 29 29 C 1.38622 * 134.88983 * 180.02562 * 28 26 25 30 30 H 1.08994 * 109.46864 * 297.54903 * 1 2 3 31 31 H 1.09000 * 109.46578 * 57.55451 * 1 2 3 32 32 H 1.08996 * 109.46833 * 177.55092 * 1 2 3 33 33 H 1.09002 * 109.46921 * 182.44444 * 3 2 1 34 34 H 1.09003 * 109.47131 * 302.44965 * 3 2 1 35 35 H 1.09001 * 109.47089 * 62.44523 * 3 2 1 36 36 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 37 37 H 1.08997 * 110.36790 * 199.90563 * 4 2 1 38 38 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 40 40 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 41 41 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 42 42 H 1.08001 * 119.71913 * 359.97438 * 21 20 18 43 43 H 1.08001 * 120.01687 * 180.29133 * 22 21 20 44 44 H 1.07999 * 120.24838 * 359.94692 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9504 -3.3002 1.6073 7 1 1.9505 -3.1587 2.6781 8 6 1.8872 -4.5813 1.0765 9 7 1.8877 -4.7537 -0.2283 10 14 1.7999 -6.0604 2.2141 11 1 1.8133 -5.6004 3.6260 12 1 0.5480 -6.8144 1.9505 13 1 2.9695 -6.9422 1.9700 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8080 -1.2022 16 1 1.4542 -0.6768 -2.0805 17 7 3.4668 -0.4157 -1.4961 18 6 3.9655 -0.5842 -2.7368 19 8 3.2700 -1.0621 -3.6119 20 6 5.3574 -0.1881 -3.0333 21 6 6.1558 0.3684 -2.0234 22 6 7.4422 0.7333 -2.2801 23 6 7.9741 0.5641 -3.5630 24 7 9.1687 0.8173 -4.1328 25 7 9.1327 0.4656 -5.3697 26 7 7.9843 -0.0181 -5.6961 27 1 7.7328 -0.3449 -6.5741 28 6 7.1777 0.0093 -4.5845 29 6 5.8709 -0.3660 -4.3145 30 1 -0.3633 0.4753 0.9111 31 1 -0.3632 0.5514 -0.8673 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1651 1.4019 -0.0438 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9382 0.9111 36 1 1.4671 -0.6461 2.0837 37 1 3.1182 -0.5233 1.4025 38 1 1.8431 -5.6489 -0.5992 39 1 2.9064 -2.8117 -1.0399 40 1 1.1219 -2.7480 -1.0598 41 1 4.0218 -0.0346 -0.7978 42 1 5.7480 0.5050 -1.0327 43 1 8.0507 1.1566 -1.4946 44 1 5.2548 -0.7904 -5.0934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977568204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:49 Heat of formation + Delta-G solvation = 106.517982 kcal Electronic energy + Delta-G solvation = -28153.585530 eV Core-core repulsion = 24301.811043 eV Total energy + Delta-G solvation = -3851.774487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46280 -40.13750 -38.47439 -37.22048 -34.13741 -33.96882 -33.16266 -30.96503 -30.73645 -30.67377 -28.14573 -26.90040 -25.67292 -24.98481 -23.69153 -23.30898 -22.66321 -20.96086 -20.11234 -19.10125 -18.65353 -18.19734 -16.74521 -16.72867 -16.51627 -16.06773 -15.11214 -14.88637 -14.54619 -14.36431 -14.18669 -13.91897 -13.80973 -13.40598 -13.28204 -12.59649 -12.46109 -12.41256 -12.08078 -12.05487 -12.03220 -11.70406 -11.48937 -11.41114 -11.11734 -11.03764 -11.01828 -10.81252 -10.42528 -10.28318 -10.05930 -9.90017 -9.76272 -9.66965 -9.28370 -8.74490 -8.65949 -8.49458 -6.85185 -5.71578 -3.06211 0.10312 0.90410 1.89615 2.19105 2.87376 3.31824 3.39040 3.44465 3.47143 3.66077 3.73156 4.31129 4.48146 4.61259 4.62499 4.77972 4.86225 4.89536 5.08688 5.23802 5.26546 5.51266 5.55901 5.60305 5.70524 5.76658 5.87785 5.89264 5.96994 5.98590 6.12848 6.16034 6.19237 6.26250 6.35384 6.47762 6.53788 6.56864 6.62967 6.65641 6.89967 7.52102 7.59268 7.75223 7.84496 7.95820 8.23067 8.43166 9.19882 9.80672 10.45452 11.39183 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003269 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.513232 B = 8563.513488 C = 9542.230409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.092 0.908 17 N -0.699 5.699 18 C 0.556 3.444 19 O -0.534 6.534 20 C -0.089 4.089 21 C -0.088 4.088 22 C -0.054 4.054 23 C 0.025 3.975 24 N -0.253 5.253 25 N -0.012 5.012 26 N -0.413 5.413 27 H 0.454 0.546 28 C 0.019 3.981 29 C -0.039 4.039 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.015 0.985 38 H 0.252 0.748 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.396 0.604 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 14.091 -6.643 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.049 3.951 15 C 0.018 3.982 16 H 0.110 0.890 17 N -0.350 5.350 18 C 0.342 3.658 19 O -0.412 6.412 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.076 4.076 23 C -0.101 4.101 24 N -0.129 5.129 25 N 0.006 4.994 26 N -0.142 5.142 27 H 0.301 0.699 28 C -0.101 4.101 29 C -0.062 4.062 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.233 0.767 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.744 13.881 -7.674 17.650 hybrid contribution -0.852 -1.296 0.609 1.666 sum 6.893 12.584 -7.065 15.993 Atomic orbital electron populations 1.21593 0.93211 1.02888 1.00625 1.22026 0.96441 0.94138 0.96520 1.21687 1.00185 0.95572 1.01480 1.21641 0.96576 0.85764 0.94363 1.44441 1.86962 0.99712 1.01777 1.19064 1.43807 0.83931 0.88921 0.90407 1.24803 1.02197 0.97383 0.95950 1.69964 1.56735 1.20708 1.09146 0.86076 0.77242 0.83016 0.79591 1.20547 1.21785 1.21847 1.21536 1.01740 0.88350 0.83460 1.22555 0.80590 0.97680 0.97366 0.89019 1.45932 1.15095 1.63283 1.10663 1.17914 0.85892 0.78904 0.83061 1.90791 1.59980 1.44262 1.46185 1.19916 0.94986 1.01222 0.93526 1.20949 0.93321 0.97437 0.99225 1.19919 0.94884 0.99468 0.93335 1.20078 0.91107 1.03010 0.95873 1.75366 1.19292 1.19196 0.99018 1.77962 1.03197 1.08139 1.10146 1.44860 1.08965 1.47815 1.12514 0.69881 1.19659 0.95700 1.06548 0.88183 1.20099 0.90727 0.97958 0.97367 0.92770 0.93360 0.91235 0.93113 0.92793 0.92550 0.94004 0.96715 0.93760 0.93321 0.92681 0.76720 0.84088 0.83681 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.61 37.16 0.32 -1.57 16 2 C -0.09 -1.38 0.83 -152.36 -0.13 -1.51 16 3 C -0.13 -1.54 8.35 37.16 0.31 -1.23 16 4 C 0.14 2.66 6.12 -2.53 -0.02 2.64 16 5 N -0.60 -14.39 3.38 -170.07 -0.58 -14.96 16 6 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 7 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -26.74 10.31 55.49 0.57 -26.16 16 10 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.17 4.09 4.73 -3.06 -0.01 4.08 16 15 C 0.12 2.18 2.59 -66.10 -0.17 2.01 16 16 H 0.09 1.70 7.45 -51.93 -0.39 1.31 16 17 N -0.70 -10.65 4.36 -53.01 -0.23 -10.88 16 18 C 0.56 8.82 7.77 -12.39 -0.10 8.72 16 19 O -0.53 -10.33 15.96 5.30 0.08 -10.25 16 20 C -0.09 -1.13 5.88 -104.92 -0.62 -1.74 16 21 C -0.09 -0.90 9.46 -39.57 -0.37 -1.28 16 22 C -0.05 -0.54 10.03 -39.70 -0.40 -0.94 16 23 C 0.02 0.30 7.36 -84.95 -0.63 -0.33 16 24 N -0.25 -3.29 12.42 32.09 0.40 -2.89 16 25 N -0.01 -0.14 13.28 60.35 0.80 0.66 16 26 N -0.41 -3.75 7.08 32.31 0.23 -3.52 16 27 H 0.45 2.24 8.96 -190.24 -1.71 0.53 16 28 C 0.02 0.21 7.40 -84.23 -0.62 -0.41 16 29 C -0.04 -0.45 9.61 -39.09 -0.38 -0.82 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.25 7.81 -51.93 -0.41 0.84 16 33 H 0.05 0.53 6.27 -51.93 -0.33 0.21 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.02 0.27 8.04 -51.93 -0.42 -0.15 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.32 7.41 -51.93 -0.38 0.93 16 40 H 0.06 1.47 7.38 -51.93 -0.38 1.09 16 41 H 0.40 5.08 5.05 -40.82 -0.21 4.87 16 42 H 0.14 1.15 6.36 -52.49 -0.33 0.81 16 43 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.15 1.61 7.63 -52.49 -0.40 1.21 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -33.69 359.35 -8.41 -42.10 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.03 Total: 2.62 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.06 Total: 1.04 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 1.19 Total: -57.75 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.69 -8.41 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977568204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.618 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds