Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30056 * 124.94500 * 2 1 4 4 C 1.35776 * 109.43354 * 179.89011 * 3 2 1 5 5 C 1.39490 * 133.74537 * 180.10261 * 4 3 2 6 6 C 1.39671 * 118.05500 * 180.30490 * 5 4 3 7 7 C 1.47685 * 120.38463 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00304 * 135.09789 * 7 6 5 9 9 N 1.34773 * 119.99844 * 315.09726 * 7 6 5 10 10 C 1.48217 * 119.97228 * 5.59890 * 9 7 6 11 11 C 1.47602 * 110.04058 * 102.55083 * 10 9 7 12 12 C 1.53793 * 111.84374 * 58.43819 * 11 10 9 13 13 N 1.43470 * 107.95767 * 281.54289 * 12 11 10 14 14 C 1.36941 * 118.93555 * 273.63100 * 13 12 11 15 15 H 1.07998 * 120.00064 * 24.80049 * 14 13 12 16 16 C 1.38808 * 119.99516 * 204.79453 * 14 13 12 17 17 N 1.31621 * 120.00418 * 17.67046 * 16 14 13 18 18 Si 1.86807 * 119.99973 * 197.66343 * 16 14 13 19 19 H 1.48502 * 109.46887 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46913 * 120.00198 * 18 16 14 21 21 H 1.48501 * 109.47060 * 240.00584 * 18 16 14 22 22 C 1.48849 * 122.12212 * 93.60920 * 13 12 11 23 23 C 1.43622 * 119.96915 * 185.87750 * 9 7 6 24 24 C 1.39989 * 119.23143 * 359.97438 * 6 5 4 25 25 N 1.31388 * 121.15863 * 359.97438 * 24 6 5 26 26 C 1.32544 * 121.79437 * 0.02562 * 25 24 6 27 27 N 1.36175 * 124.94142 * 180.30142 * 2 1 3 28 28 H 0.96994 * 126.23216 * 359.92651 * 27 2 1 29 29 H 1.08997 * 109.47168 * 269.69758 * 1 2 3 30 30 H 1.09007 * 109.46767 * 29.69758 * 1 2 3 31 31 H 1.08994 * 109.47378 * 149.69534 * 1 2 3 32 32 H 1.07993 * 120.96993 * 0.33010 * 5 4 3 33 33 H 1.09000 * 109.32311 * 222.78594 * 10 9 7 34 34 H 1.09003 * 109.32000 * 342.24575 * 10 9 7 35 35 H 1.08996 * 109.10259 * 297.75882 * 11 10 9 36 36 H 1.09001 * 108.83913 * 178.94017 * 11 10 9 37 37 H 1.08994 * 109.76447 * 161.92900 * 12 11 10 38 38 H 1.08996 * 109.80698 * 41.18179 * 12 11 10 39 39 H 0.96998 * 120.00575 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48112 * 200.66178 * 22 13 12 41 41 H 1.08999 * 109.48887 * 80.63331 * 22 13 12 42 42 H 1.08995 * 108.87566 * 31.41595 * 23 9 7 43 43 H 1.09001 * 108.87820 * 149.86303 * 23 9 7 44 44 H 1.08000 * 119.42020 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7030 0.0025 5 6 4.7591 1.4160 0.0054 6 6 5.9538 0.6925 0.0008 7 6 7.2528 1.3952 0.0030 8 8 8.1429 1.0250 0.7436 9 7 7.4513 2.4469 -0.8160 10 6 6.3293 2.9757 -1.6274 11 6 5.8005 4.2104 -1.0155 12 6 6.8843 5.2936 -0.8842 13 7 7.6964 4.9712 0.2537 14 6 7.3026 5.4026 1.4923 15 1 6.2601 5.6068 1.6868 16 6 8.2435 5.5772 2.4978 17 7 9.5208 5.6719 2.1948 18 14 7.6968 5.6779 4.2813 19 1 6.2196 5.5442 4.3545 20 1 8.3316 4.5817 5.0562 21 1 8.1046 6.9873 4.8508 22 6 8.9528 4.1825 0.1314 23 6 8.7514 3.0506 -0.9063 24 6 5.9057 -0.7066 -0.0059 25 7 4.7586 -1.3473 -0.0074 26 6 3.5996 -0.7044 -0.0033 27 7 2.2869 -1.1163 -0.0059 28 1 1.9739 -2.0343 -0.0097 29 1 -0.3633 -0.0054 1.0276 30 1 -0.3633 0.8928 -0.5092 31 1 -0.3634 -0.8872 -0.5185 32 1 4.7634 2.4959 0.0114 33 1 6.6839 3.1930 -2.6350 34 1 5.5382 2.2276 -1.6798 35 1 5.4087 3.9782 -0.0252 36 1 4.9903 4.5922 -1.6368 37 1 6.4165 6.2673 -0.7391 38 1 7.5000 5.3109 -1.7834 39 1 10.1783 5.7943 2.8974 40 1 9.2049 3.7481 1.0988 41 1 9.7618 4.8357 -0.1956 42 1 9.5084 2.2836 -0.7429 43 1 8.8801 3.4628 -1.9071 44 1 6.8276 -1.2691 -0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981300857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = 97.117074 kcal Electronic energy + Delta-G solvation = -28955.781129 eV Core-core repulsion = 25103.598988 eV Total energy + Delta-G solvation = -3852.182141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55909 -40.10527 -38.13603 -36.88797 -34.55669 -33.76208 -32.40240 -31.81160 -31.67304 -30.56270 -28.43005 -27.53214 -25.48914 -24.33399 -23.41452 -23.09205 -22.01373 -21.21942 -19.84249 -19.07865 -18.60777 -17.43161 -16.87928 -16.48834 -16.14413 -15.87878 -15.75763 -15.05859 -14.30965 -14.15718 -14.00334 -13.79153 -13.74308 -13.56529 -13.20296 -13.17720 -12.80834 -12.75663 -12.40373 -12.32086 -12.14077 -11.61693 -11.34391 -11.19970 -11.11132 -10.90717 -10.71490 -10.55426 -10.37964 -10.13444 -9.75209 -9.73388 -9.64188 -9.22416 -8.84171 -8.59337 -8.38399 -8.04333 -6.65007 -5.72420 -3.13275 0.63764 0.88523 2.27101 2.51635 3.06212 3.43231 3.44621 3.52512 3.53418 3.66092 3.83340 4.17714 4.47322 4.57865 4.65655 4.83061 4.85560 4.99538 5.04921 5.15682 5.23608 5.41616 5.44795 5.53415 5.62869 5.68929 5.77871 5.88245 5.95579 5.98334 6.16363 6.18009 6.37407 6.40151 6.42544 6.44202 6.78456 6.86187 6.96603 6.99695 7.46726 7.50770 7.64066 7.69187 7.85049 7.91323 8.51065 8.62425 9.27209 9.96073 10.40708 11.35789 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004033 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.068616 B = 6940.423583 C = 7451.941397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.474 5.474 4 C -0.003 4.003 5 C 0.009 3.991 6 C -0.180 4.180 7 C 0.566 3.434 8 O -0.530 6.530 9 N -0.575 5.575 10 C 0.111 3.889 11 C -0.178 4.178 12 C 0.165 3.835 13 N -0.590 5.590 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.009 3.991 17 N -0.902 5.902 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.167 3.833 23 C 0.091 3.909 24 C 0.188 3.812 25 N -0.489 5.489 26 C 0.250 3.750 27 N -0.588 5.588 28 H 0.426 0.574 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.163 0.837 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 -12.775 -10.275 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 N -0.195 5.195 4 C -0.122 4.122 5 C -0.018 4.018 6 C -0.188 4.188 7 C 0.353 3.647 8 O -0.407 6.407 9 N -0.305 5.305 10 C -0.011 4.011 11 C -0.220 4.220 12 C 0.036 3.964 13 N -0.311 5.311 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.190 4.190 17 N -0.546 5.546 18 Si 0.725 3.275 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.218 1.218 22 C 0.041 3.959 23 C -0.034 4.034 24 C 0.020 3.980 25 N -0.201 5.201 26 C 0.014 3.986 27 N -0.203 5.203 28 H 0.266 0.734 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.953 -12.926 -9.810 22.066 hybrid contribution -0.169 -0.321 1.101 1.160 sum -15.122 -13.247 -8.708 21.909 Atomic orbital electron populations 1.20417 0.83458 1.04988 1.04585 1.23707 0.95785 0.80347 0.97954 1.70465 1.00366 1.27381 1.21247 1.19536 0.92724 0.91542 1.08431 1.21533 0.87836 1.02025 0.90383 1.20788 0.94308 0.95553 1.08190 1.17747 0.86268 0.80313 0.80405 1.90798 1.44165 1.67055 1.38706 1.47270 1.11336 1.29852 1.42080 1.21126 0.89203 0.96511 0.94287 1.22160 1.00863 0.97817 1.01112 1.20218 0.91322 0.94450 0.90433 1.43695 1.24802 1.59740 1.02907 1.19145 0.92025 1.39845 0.87759 0.91795 1.24922 0.95469 1.00037 0.98549 1.70034 1.00238 1.52974 1.31348 0.86343 0.78126 0.77154 0.85879 1.20377 1.21526 1.21795 1.21847 0.87606 0.88904 0.97512 1.22028 0.83271 0.97590 1.00465 1.22623 0.94214 0.90076 0.91135 1.66458 0.95737 1.40359 1.17584 1.19080 0.86124 0.91330 1.02055 1.42660 1.03682 1.10456 1.63505 0.73420 0.89024 0.88105 0.89954 0.81950 0.91279 0.90743 0.91095 0.92084 0.93429 0.94695 0.93737 0.90386 0.94166 0.90988 0.92293 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.29 2.90 8.08 -154.74 -1.25 1.65 16 3 N -0.47 -6.67 11.29 -8.20 -0.09 -6.76 16 4 C 0.00 -0.04 7.23 -84.69 -0.61 -0.66 16 5 C 0.01 0.15 7.49 -38.58 -0.29 -0.14 16 6 C -0.18 -2.97 5.15 -104.85 -0.54 -3.51 16 7 C 0.57 10.89 7.27 -12.40 -0.09 10.80 16 8 O -0.53 -12.03 16.60 5.30 0.09 -11.95 16 9 N -0.57 -10.34 2.45 -177.58 -0.43 -10.78 16 10 C 0.11 1.65 5.07 -5.70 -0.03 1.62 16 11 C -0.18 -2.93 5.06 -28.92 -0.15 -3.08 16 12 C 0.16 3.23 5.63 -5.23 -0.03 3.20 16 13 N -0.59 -14.34 2.54 -172.00 -0.44 -14.78 16 14 C -0.26 -7.10 9.26 -15.06 -0.14 -7.24 16 15 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.01 0.26 4.86 -17.43 -0.08 0.17 16 17 N -0.90 -26.57 11.09 55.49 0.62 -25.95 16 18 Si 0.89 22.72 29.59 -169.99 -5.03 17.69 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 C 0.17 3.99 5.19 -1.75 -0.01 3.98 16 23 C 0.09 1.73 5.21 -4.57 -0.02 1.71 16 24 C 0.19 2.77 10.83 -17.09 -0.19 2.59 16 25 N -0.49 -7.10 10.36 -11.96 -0.12 -7.22 16 26 C 0.25 3.50 8.45 -155.64 -1.31 2.19 16 27 N -0.59 -5.83 6.20 -9.44 -0.06 -5.88 16 28 H 0.43 2.68 8.96 -40.82 -0.37 2.31 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.16 2.70 4.03 -52.49 -0.21 2.49 16 33 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.07 1.03 4.74 -51.93 -0.25 0.78 16 35 H 0.07 1.35 5.89 -51.93 -0.31 1.04 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.96 8.02 -51.93 -0.42 0.54 16 38 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 39 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 2.20 6.59 -51.93 -0.34 1.85 16 41 H 0.04 1.01 8.00 -51.93 -0.42 0.60 16 42 H 0.07 1.37 7.46 -51.93 -0.39 0.98 16 43 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 44 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -35.43 350.62 -10.12 -45.55 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.57 Total: 1.50 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: -4.36 Total: 13.29 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -0.53 Total: -71.38 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.43 -10.12 -45.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981300857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.671 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds