Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30056 * 124.94500 * 2 1 4 4 C 1.35776 * 109.43354 * 179.89011 * 3 2 1 5 5 C 1.39490 * 133.74537 * 180.10261 * 4 3 2 6 6 C 1.39671 * 118.05500 * 180.30490 * 5 4 3 7 7 C 1.47685 * 120.38463 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00304 * 135.09789 * 7 6 5 9 9 N 1.34773 * 119.99844 * 315.09726 * 7 6 5 10 10 C 1.48217 * 119.97228 * 5.59890 * 9 7 6 11 11 C 1.47602 * 110.04058 * 102.55083 * 10 9 7 12 12 C 1.53793 * 111.84374 * 58.43819 * 11 10 9 13 13 N 1.43470 * 107.95767 * 281.54289 * 12 11 10 14 14 C 1.36941 * 118.93555 * 273.63100 * 13 12 11 15 15 H 1.07998 * 120.00064 * 24.80049 * 14 13 12 16 16 C 1.38808 * 119.99516 * 204.79453 * 14 13 12 17 17 N 1.31621 * 120.00418 * 17.67046 * 16 14 13 18 18 Si 1.86807 * 119.99973 * 197.66343 * 16 14 13 19 19 H 1.48502 * 109.46887 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46913 * 120.00198 * 18 16 14 21 21 H 1.48501 * 109.47060 * 240.00584 * 18 16 14 22 22 C 1.48849 * 122.12212 * 93.60920 * 13 12 11 23 23 C 1.43622 * 119.96915 * 185.87750 * 9 7 6 24 24 C 1.39989 * 119.23143 * 359.97438 * 6 5 4 25 25 N 1.31388 * 121.15863 * 359.97438 * 24 6 5 26 26 C 1.32544 * 121.79437 * 0.02562 * 25 24 6 27 27 N 1.36175 * 124.94142 * 180.30142 * 2 1 3 28 28 H 0.96994 * 126.23216 * 359.92651 * 27 2 1 29 29 H 1.08997 * 109.47168 * 269.69758 * 1 2 3 30 30 H 1.09007 * 109.46767 * 29.69758 * 1 2 3 31 31 H 1.08994 * 109.47378 * 149.69534 * 1 2 3 32 32 H 1.07993 * 120.96993 * 0.33010 * 5 4 3 33 33 H 1.09000 * 109.32311 * 222.78594 * 10 9 7 34 34 H 1.09003 * 109.32000 * 342.24575 * 10 9 7 35 35 H 1.08996 * 109.10259 * 297.75882 * 11 10 9 36 36 H 1.09001 * 108.83913 * 178.94017 * 11 10 9 37 37 H 1.08994 * 109.76447 * 161.92900 * 12 11 10 38 38 H 1.08996 * 109.80698 * 41.18179 * 12 11 10 39 39 H 0.96998 * 120.00575 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48112 * 200.66178 * 22 13 12 41 41 H 1.08999 * 109.48887 * 80.63331 * 22 13 12 42 42 H 1.08995 * 108.87566 * 31.41595 * 23 9 7 43 43 H 1.09001 * 108.87820 * 149.86303 * 23 9 7 44 44 H 1.08000 * 119.42020 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7030 0.0025 5 6 4.7591 1.4160 0.0054 6 6 5.9538 0.6925 0.0008 7 6 7.2528 1.3952 0.0030 8 8 8.1429 1.0250 0.7436 9 7 7.4513 2.4469 -0.8160 10 6 6.3293 2.9757 -1.6274 11 6 5.8005 4.2104 -1.0155 12 6 6.8843 5.2936 -0.8842 13 7 7.6964 4.9712 0.2537 14 6 7.3026 5.4026 1.4923 15 1 6.2601 5.6068 1.6868 16 6 8.2435 5.5772 2.4978 17 7 9.5208 5.6719 2.1948 18 14 7.6968 5.6779 4.2813 19 1 6.2196 5.5442 4.3545 20 1 8.3316 4.5817 5.0562 21 1 8.1046 6.9873 4.8508 22 6 8.9528 4.1825 0.1314 23 6 8.7514 3.0506 -0.9063 24 6 5.9057 -0.7066 -0.0059 25 7 4.7586 -1.3473 -0.0074 26 6 3.5996 -0.7044 -0.0033 27 7 2.2869 -1.1163 -0.0059 28 1 1.9739 -2.0343 -0.0097 29 1 -0.3633 -0.0054 1.0276 30 1 -0.3633 0.8928 -0.5092 31 1 -0.3634 -0.8872 -0.5185 32 1 4.7634 2.4959 0.0114 33 1 6.6839 3.1930 -2.6350 34 1 5.5382 2.2276 -1.6798 35 1 5.4087 3.9782 -0.0252 36 1 4.9903 4.5922 -1.6368 37 1 6.4165 6.2673 -0.7391 38 1 7.5000 5.3109 -1.7834 39 1 10.1783 5.7943 2.8974 40 1 9.2049 3.7481 1.0988 41 1 9.7618 4.8357 -0.1956 42 1 9.5084 2.2836 -0.7429 43 1 8.8801 3.4628 -1.9071 44 1 6.8276 -1.2691 -0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981300857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = 73.238616 kcal Electronic energy + Delta-G solvation = -28956.816576 eV Core-core repulsion = 25103.598988 eV Total energy + Delta-G solvation = -3853.217588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.54731 -41.49777 -39.33462 -38.48602 -36.24118 -34.91643 -33.95697 -33.22780 -32.50515 -32.13274 -29.61925 -28.92380 -27.15914 -25.88124 -24.92901 -24.23853 -23.31819 -22.15493 -21.53579 -20.43856 -19.66857 -18.78097 -18.55452 -17.80524 -17.40120 -17.21718 -16.90978 -16.70105 -15.99809 -15.59684 -15.53239 -15.24462 -14.91593 -14.52746 -14.45177 -14.33783 -14.26336 -13.98703 -13.59838 -13.40369 -13.28725 -13.08253 -12.96178 -12.86848 -12.48430 -12.32440 -12.29365 -12.16256 -12.09030 -11.85914 -11.70306 -11.41940 -11.10565 -10.52001 -10.40374 -9.98753 -9.66218 -9.53183 -8.66761 -7.86673 -5.28076 -0.44875 -0.26280 1.37000 1.39493 1.42039 1.48860 1.56337 1.68852 2.06961 2.49019 2.54542 2.86165 3.23430 3.28037 3.45258 3.54543 3.67225 3.73054 3.96206 3.97431 4.13891 4.29013 4.35305 4.45035 4.52771 4.55166 4.74255 4.75807 4.79882 4.82216 4.83141 4.86609 4.94928 4.96525 5.13449 5.24747 5.29398 5.34912 5.51060 5.58570 5.71138 5.82156 6.07909 6.39682 6.39798 6.57943 6.66094 7.13877 7.18068 7.95604 8.35336 9.18466 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004033 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.068616 B = 6940.423583 C = 7451.941397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.314 3.686 3 N -0.517 5.517 4 C -0.016 4.016 5 C 0.002 3.998 6 C -0.189 4.189 7 C 0.562 3.438 8 O -0.577 6.577 9 N -0.575 5.575 10 C 0.110 3.890 11 C -0.164 4.164 12 C 0.157 3.843 13 N -0.603 5.603 14 C -0.255 4.255 15 H 0.062 0.938 16 C -0.046 4.046 17 N -0.930 5.930 18 Si 0.946 3.054 19 H -0.270 1.270 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.178 3.822 23 C 0.103 3.897 24 C 0.184 3.816 25 N -0.487 5.487 26 C 0.241 3.759 27 N -0.572 5.572 28 H 0.445 0.555 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.246 0.754 40 H 0.026 0.974 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.835 -14.141 -12.153 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.238 5.238 4 C -0.135 4.135 5 C -0.025 4.025 6 C -0.197 4.197 7 C 0.350 3.650 8 O -0.458 6.458 9 N -0.305 5.305 10 C -0.011 4.011 11 C -0.204 4.204 12 C 0.030 3.970 13 N -0.326 5.326 14 C -0.386 4.386 15 H 0.079 0.921 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.228 1.228 21 H -0.213 1.213 22 C 0.052 3.948 23 C -0.022 4.022 24 C 0.016 3.984 25 N -0.199 5.199 26 C 0.004 3.996 27 N -0.189 5.189 28 H 0.289 0.711 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.589 -14.304 -11.739 26.229 hybrid contribution 0.719 0.086 1.636 1.789 sum -17.870 -14.218 -10.104 24.971 Atomic orbital electron populations 1.20750 0.79382 1.06980 1.06242 1.24775 0.97539 0.79261 0.93829 1.70502 0.99946 1.29305 1.24096 1.19668 0.93212 0.92202 1.08423 1.21397 0.88276 1.01583 0.91268 1.20526 0.92964 0.96078 1.10142 1.18217 0.86731 0.80408 0.79602 1.90766 1.45945 1.68460 1.40585 1.47423 1.11744 1.29350 1.41941 1.21345 0.88728 0.95968 0.95026 1.21938 1.00524 0.97371 1.00590 1.20471 0.91765 0.95229 0.89537 1.43890 1.25214 1.60079 1.03378 1.19403 0.91790 1.38065 0.89354 0.92061 1.25549 0.95725 1.01247 1.01624 1.70162 1.00916 1.54927 1.31673 0.85513 0.77948 0.76676 0.82253 1.19492 1.22822 1.21261 1.21519 0.87176 0.89818 0.96318 1.21752 0.84141 0.95812 1.00459 1.22771 0.94957 0.89524 0.91178 1.66533 0.95856 1.40069 1.17485 1.19335 0.87275 0.91216 1.01805 1.42722 1.02024 1.11716 1.62442 0.71140 0.87297 0.87584 0.86443 0.82873 0.87823 0.89227 0.93945 0.88403 0.94114 0.92389 0.94452 0.95581 0.96217 0.91409 0.88528 0.79636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.31 5.24 8.08 137.89 1.11 6.36 16 3 N -0.52 -13.52 11.29 -179.87 -2.03 -15.55 16 4 C -0.02 -0.46 7.23 39.46 0.29 -0.18 16 5 C 0.00 0.06 7.49 22.92 0.17 0.23 16 6 C -0.19 -6.24 5.15 -20.01 -0.10 -6.34 16 7 C 0.56 22.02 7.27 86.74 0.63 22.65 16 8 O -0.58 -27.35 16.60 -3.94 -0.07 -27.42 16 9 N -0.58 -20.38 2.45 -834.00 -2.04 -22.42 16 10 C 0.11 3.01 5.07 84.36 0.43 3.44 16 11 C -0.16 -5.06 5.06 29.17 0.15 -4.92 16 12 C 0.16 5.96 5.63 87.21 0.49 6.45 16 13 N -0.60 -29.77 2.54 -698.08 -1.77 -31.54 16 14 C -0.26 -14.40 9.26 84.03 0.78 -13.63 16 15 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 16 C -0.05 -2.70 4.86 84.86 0.41 -2.29 16 17 N -0.93 -57.29 11.09 21.65 0.24 -57.05 16 18 Si 0.95 48.25 29.59 68.60 2.03 50.28 16 19 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 22 C 0.18 8.79 5.19 86.57 0.45 9.24 16 23 C 0.10 3.91 5.21 87.56 0.46 4.37 16 24 C 0.18 5.37 10.83 85.18 0.92 6.29 16 25 N -0.49 -13.50 10.36 -191.76 -1.99 -15.48 16 26 C 0.24 6.31 8.45 133.91 1.13 7.44 16 27 N -0.57 -9.53 6.20 -183.78 -1.14 -10.67 16 28 H 0.45 3.89 8.96 -92.71 -0.83 3.06 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.15 5.09 4.03 -2.91 -0.01 5.08 16 33 H 0.10 2.20 8.05 -2.39 -0.02 2.18 16 34 H 0.09 2.28 4.74 -2.39 -0.01 2.27 16 35 H 0.04 1.59 5.89 -2.39 -0.01 1.57 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.59 8.02 -2.39 -0.02 1.58 16 38 H 0.06 1.94 7.59 -2.39 -0.02 1.92 16 39 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.03 1.54 6.59 -2.39 -0.02 1.52 16 41 H 0.02 1.04 8.00 -2.39 -0.02 1.02 16 42 H 0.07 2.63 7.46 -2.39 -0.02 2.61 16 43 H 0.10 2.94 7.73 -2.39 -0.02 2.92 16 44 H 0.19 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -82.09 350.62 1.53 -80.56 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.23 Total: 9.83 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 8.06 Total: 39.48 kcal Atomic # 7 Polarization: -144.00 SS G_CDS: -8.73 Total: -152.72 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.07 Total: -27.42 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -82.09 1.53 -80.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981300857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.794 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds