Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30276 * 124.97571 * 2 1 4 4 C 1.34655 * 109.67478 * 180.02562 * 3 2 1 5 5 C 1.40829 * 107.25834 * 0.02562 * 4 3 2 6 6 N 1.32114 * 120.46486 * 180.02562 * 5 4 3 7 7 C 1.31725 * 121.94292 * 0.02562 * 6 5 4 8 8 C 1.38338 * 121.55245 * 359.73315 * 7 6 5 9 9 C 1.39639 * 119.37000 * 0.51915 * 8 7 6 10 10 C 1.47766 * 121.06975 * 179.77453 * 9 8 7 11 11 O 1.21565 * 119.99879 * 120.15503 * 10 9 8 12 12 N 1.34777 * 120.00147 * 300.16044 * 10 9 8 13 13 C 1.48210 * 119.97060 * 183.64084 * 12 10 9 14 14 C 1.47140 * 110.34404 * 102.50851 * 13 12 10 15 15 C 1.53794 * 111.83957 * 58.29659 * 14 13 12 16 16 N 1.43465 * 107.96155 * 281.66841 * 15 14 13 17 17 C 1.36935 * 118.94004 * 273.60916 * 16 15 14 18 18 H 1.08010 * 119.99691 * 25.07724 * 17 16 15 19 19 C 1.38812 * 120.00246 * 205.07967 * 17 16 15 20 20 N 1.31615 * 120.00011 * 206.56322 * 19 17 16 21 21 Si 1.86798 * 119.99991 * 26.56301 * 19 17 16 22 22 H 1.48503 * 109.47319 * 266.73859 * 21 19 17 23 23 H 1.48498 * 109.47384 * 146.73514 * 21 19 17 24 24 H 1.48501 * 109.46908 * 26.73481 * 21 19 17 25 25 C 1.48856 * 122.12138 * 93.88893 * 16 15 14 26 26 C 1.43624 * 119.96932 * 3.65979 * 12 10 9 27 27 N 1.35991 * 124.96892 * 180.02562 * 2 1 3 28 28 H 0.96996 * 126.35710 * 359.94818 * 27 2 1 29 29 H 1.09000 * 109.47770 * 89.96893 * 1 2 3 30 30 H 1.09010 * 109.47172 * 209.97215 * 1 2 3 31 31 H 1.09004 * 109.46997 * 329.96936 * 1 2 3 32 32 H 1.08001 * 119.22201 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.31208 * 180.27834 * 8 7 6 34 34 H 1.09002 * 109.32830 * 342.24590 * 13 12 10 35 35 H 1.08998 * 109.18320 * 222.69079 * 13 12 10 36 36 H 1.09003 * 109.00723 * 297.69400 * 14 13 12 37 37 H 1.08997 * 108.94598 * 178.86552 * 14 13 12 38 38 H 1.09002 * 109.76347 * 162.04885 * 15 14 13 39 39 H 1.09003 * 109.80783 * 41.30945 * 15 14 13 40 40 H 0.96996 * 120.00287 * 5.08907 * 20 19 17 41 41 H 1.08999 * 109.48367 * 80.34732 * 25 16 15 42 42 H 1.08996 * 109.48236 * 200.38318 * 25 16 15 43 43 H 1.08998 * 108.87210 * 31.42740 * 26 12 10 44 44 H 1.08994 * 108.87420 * 149.96655 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2537 1.0675 0.0000 4 6 3.5525 0.7121 -0.0006 5 6 3.6006 -0.6953 -0.0015 6 7 4.7616 -1.3259 -0.0018 7 6 5.9075 -0.6762 -0.0006 8 6 5.9559 0.7063 -0.0045 9 6 4.7637 1.4333 0.0011 10 6 4.7715 2.9109 0.0021 11 8 4.2420 3.5222 -0.9055 12 7 5.3658 3.5810 1.0093 13 6 5.3036 5.0611 1.0520 14 6 4.3035 5.5029 2.0367 15 6 4.6137 4.9701 3.4456 16 7 4.1974 3.5983 3.5014 17 6 2.8977 3.3128 3.8243 18 1 2.1229 4.0425 3.6406 19 6 2.5759 2.0856 4.3876 20 7 1.3695 1.5843 4.2279 21 14 3.8550 1.1457 5.3723 22 1 4.5639 0.1927 4.4810 23 1 3.1857 0.3965 6.4658 24 1 4.8326 2.1009 5.9530 25 6 5.1345 2.4750 3.2256 26 6 6.0592 2.8600 2.0399 27 7 2.2863 -1.1144 -0.0005 28 1 1.9758 -2.0333 -0.0002 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 6.8310 -1.2362 -0.0004 33 1 6.9067 1.2184 -0.0080 34 1 5.0312 5.4394 0.0667 35 1 6.2819 5.4528 1.3308 36 1 3.3209 5.1444 1.7300 37 1 4.2910 6.5925 2.0639 38 1 4.0672 5.5516 4.1881 39 1 5.6842 5.0386 3.6391 40 1 0.7286 2.0352 3.6562 41 1 5.7374 2.2786 4.1121 42 1 4.5654 1.5819 2.9676 43 1 6.4808 1.9507 1.6115 44 1 6.8715 3.4803 2.4187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981662924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = 95.484620 kcal Electronic energy + Delta-G solvation = -30185.343907 eV Core-core repulsion = 26333.090978 eV Total energy + Delta-G solvation = -3852.252929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22217 -39.90215 -38.09676 -37.06430 -34.33918 -33.70345 -32.67634 -31.37759 -31.33765 -30.94700 -28.11527 -27.55969 -25.91594 -24.11954 -23.18452 -22.82974 -21.93390 -20.88867 -19.84560 -19.41098 -18.00395 -17.37107 -17.17225 -16.62066 -16.02667 -15.68594 -15.41691 -15.04349 -14.61650 -14.47944 -14.03692 -13.73758 -13.38009 -13.31271 -13.26661 -12.98330 -12.83027 -12.70671 -12.40869 -12.25518 -11.99144 -11.85345 -11.53559 -11.32299 -10.90356 -10.86136 -10.65971 -10.36664 -10.27226 -10.02125 -9.80287 -9.72841 -9.18033 -8.95564 -8.67082 -8.40624 -8.19411 -8.11461 -6.90906 -6.25822 -3.18986 0.74570 1.31595 2.63657 2.94607 3.01438 3.40249 3.42055 3.52730 3.66943 3.99316 4.17116 4.49059 4.64199 4.67822 4.87828 4.95389 5.05661 5.21820 5.26597 5.38508 5.44012 5.49741 5.52261 5.56739 5.62486 5.81536 5.82490 5.87914 5.90718 6.03291 6.07530 6.09486 6.22315 6.31580 6.36734 6.51866 6.58771 6.69942 6.74498 6.90737 7.15014 7.26889 7.78377 7.95790 8.04781 8.14640 8.51907 8.53894 9.11292 9.74915 10.21977 11.18185 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009897 B = 0.007252 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.396480 B = 3860.050764 C = 4779.903913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.309 3.691 3 N -0.460 5.460 4 C 0.062 3.938 5 C 0.238 3.762 6 N -0.474 5.474 7 C 0.127 3.873 8 C -0.165 4.165 9 C -0.017 4.017 10 C 0.575 3.425 11 O -0.530 6.530 12 N -0.578 5.578 13 C 0.131 3.869 14 C -0.170 4.170 15 C 0.162 3.838 16 N -0.595 5.595 17 C -0.341 4.341 18 H 0.065 0.935 19 C -0.004 4.004 20 N -0.912 5.912 21 Si 1.040 2.960 22 H -0.299 1.299 23 H -0.301 1.301 24 H -0.287 1.287 25 C 0.112 3.888 26 C 0.082 3.918 27 N -0.586 5.586 28 H 0.426 0.574 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -3.531 -8.220 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.042 3.958 3 N -0.179 5.179 4 C -0.062 4.062 5 C 0.001 3.999 6 N -0.187 5.187 7 C -0.039 4.039 8 C -0.188 4.188 9 C -0.029 4.029 10 C 0.362 3.638 11 O -0.407 6.407 12 N -0.309 5.309 13 C 0.010 3.990 14 C -0.211 4.211 15 C 0.034 3.966 16 N -0.318 5.318 17 C -0.470 4.470 18 H 0.083 0.917 19 C -0.206 4.206 20 N -0.551 5.551 21 Si 0.872 3.128 22 H -0.228 1.228 23 H -0.228 1.228 24 H -0.213 1.213 25 C -0.015 4.015 26 C -0.044 4.044 27 N -0.201 5.201 28 H 0.265 0.735 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.496 -4.518 -7.766 11.701 hybrid contribution -0.061 0.801 -0.616 1.013 sum 7.435 -3.717 -8.382 11.805 Atomic orbital electron populations 1.20419 0.83482 1.05628 1.03851 1.23807 0.95957 0.80007 0.96027 1.70229 1.00328 1.27148 1.20197 1.19112 0.92253 0.90932 1.03897 1.18828 0.86149 0.90907 1.04061 1.66128 0.96043 1.41448 1.15078 1.22339 0.94187 0.91062 0.96291 1.21966 0.97416 0.95463 1.03966 1.19462 0.91153 0.93941 0.98388 1.17861 0.77623 0.86119 0.82166 1.90745 1.44318 1.68908 1.36682 1.47233 1.53638 1.06952 1.23083 1.20610 0.99222 0.78354 1.00794 1.21837 1.00921 0.99199 0.99105 1.20330 0.96626 0.86259 0.93355 1.43895 1.08682 0.99305 1.79893 1.20128 0.83286 1.03597 1.39950 0.91718 1.25932 1.00118 0.95289 0.99290 1.70801 1.06852 1.38325 1.39094 0.84174 0.75593 0.75622 0.77401 1.22757 1.22848 1.21308 1.22513 0.92388 0.92652 0.93928 1.22135 0.95129 0.97077 0.90078 1.42705 1.03529 1.10432 1.63436 0.73464 0.89366 0.89847 0.87739 0.81365 0.83459 0.90110 0.91759 0.91026 0.92373 0.93061 0.94772 0.92607 0.94856 0.91468 0.90372 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.51 36.00 0.38 -0.56 16 2 C 0.31 5.38 8.08 -154.73 -1.25 4.13 16 3 N -0.46 -10.14 11.23 -8.08 -0.09 -10.23 16 4 C 0.06 1.31 7.01 -84.62 -0.59 0.71 16 5 C 0.24 4.41 8.46 -155.64 -1.32 3.09 16 6 N -0.47 -7.87 10.35 -12.30 -0.13 -8.00 16 7 C 0.13 1.74 11.14 -17.56 -0.20 1.55 16 8 C -0.17 -2.42 7.82 -39.02 -0.31 -2.73 16 9 C -0.02 -0.33 4.99 -104.45 -0.52 -0.85 16 10 C 0.58 12.01 7.21 -12.37 -0.09 11.92 16 11 O -0.53 -12.54 16.53 5.31 0.09 -12.45 16 12 N -0.58 -10.74 2.46 -177.58 -0.44 -11.18 16 13 C 0.13 2.21 5.72 -5.92 -0.03 2.18 16 14 C -0.17 -3.14 5.64 -29.13 -0.16 -3.31 16 15 C 0.16 3.24 5.63 -5.24 -0.03 3.21 16 16 N -0.60 -14.22 2.31 -171.78 -0.40 -14.62 16 17 C -0.34 -9.66 9.50 -15.06 -0.14 -9.81 16 18 H 0.07 2.00 8.06 -52.48 -0.42 1.58 16 19 C 0.00 -0.13 5.05 -17.43 -0.09 -0.22 16 20 N -0.91 -28.06 13.70 55.49 0.76 -27.30 16 21 Si 1.04 26.56 24.53 -169.99 -4.17 22.39 16 22 H -0.30 -7.37 6.76 56.52 0.38 -6.99 16 23 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.29 -6.93 6.80 56.52 0.38 -6.54 16 25 C 0.11 2.42 4.59 -1.56 -0.01 2.41 16 26 C 0.08 1.38 5.03 -4.39 -0.02 1.36 16 27 N -0.59 -9.22 6.23 -9.43 -0.06 -9.28 16 28 H 0.43 4.92 8.96 -40.82 -0.37 4.56 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.15 1.61 7.23 -52.49 -0.38 1.23 16 34 H 0.08 1.40 7.09 -51.93 -0.37 1.03 16 35 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.07 1.65 7.91 -51.93 -0.41 1.24 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 1.05 8.02 -51.93 -0.42 0.64 16 39 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 40 H 0.26 8.18 8.73 -40.82 -0.36 7.83 16 41 H 0.03 0.71 6.09 -51.93 -0.32 0.39 16 42 H 0.07 1.69 5.77 -51.93 -0.30 1.39 16 43 H 0.08 1.15 4.36 -51.93 -0.23 0.92 16 44 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -38.46 350.60 -9.25 -47.71 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.72 Total: 4.58 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -4.38 Total: 13.09 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -0.35 Total: -80.60 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -4.17 Total: 22.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.46 -9.25 -47.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981662924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.192 kcal (2) G-P(sol) polarization free energy of solvation -38.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds