Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39957 * 120.31955 * 2 1 4 4 N 1.31498 * 120.10506 * 179.75382 * 3 2 1 5 5 C 1.33381 * 120.85214 * 0.53493 * 4 3 2 6 6 C 1.40802 * 132.47711 * 179.75392 * 5 4 3 7 7 C 1.46588 * 126.53643 * 359.97438 * 6 5 4 8 8 O 1.21718 * 120.00013 * 314.18585 * 7 6 5 9 9 N 1.34782 * 120.00096 * 134.18806 * 7 6 5 10 10 C 1.48214 * 119.96757 * 4.92213 * 9 7 6 11 11 C 1.47142 * 110.34549 * 102.46370 * 10 9 7 12 12 C 1.53793 * 111.83807 * 58.29418 * 11 10 9 13 13 N 1.43467 * 107.96367 * 281.67122 * 12 11 10 14 14 C 1.36944 * 118.94124 * 273.63183 * 13 12 11 15 15 H 1.07999 * 119.99395 * 32.10296 * 14 13 12 16 16 C 1.38812 * 119.99889 * 212.10698 * 14 13 12 17 17 N 1.31618 * 119.99896 * 359.73639 * 16 14 13 18 18 Si 1.86802 * 119.99789 * 179.74232 * 16 14 13 19 19 H 1.48497 * 109.46854 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46849 * 119.99630 * 18 16 14 21 21 H 1.48494 * 109.47110 * 239.99807 * 18 16 14 22 22 C 1.48856 * 122.12065 * 93.65401 * 13 12 11 23 23 C 1.43611 * 119.96926 * 184.64049 * 9 7 6 24 24 C 1.40637 * 106.92528 * 179.97438 * 6 5 4 25 25 N 1.30705 * 108.72549 * 0.02562 * 24 6 5 26 26 N 1.36593 * 120.80181 * 359.72104 * 5 4 3 27 27 C 1.35749 * 120.31879 * 180.28168 * 2 1 3 28 28 H 1.09008 * 109.46681 * 269.71906 * 1 2 3 29 29 H 1.08992 * 109.47596 * 29.71975 * 1 2 3 30 30 H 1.09000 * 109.47298 * 149.72800 * 1 2 3 31 31 H 1.08005 * 119.94724 * 0.03059 * 3 2 1 32 32 H 1.09003 * 109.31900 * 222.72972 * 10 9 7 33 33 H 1.09005 * 109.32537 * 342.37097 * 10 9 7 34 34 H 1.08995 * 109.00642 * 178.90090 * 11 10 9 35 35 H 1.08996 * 109.00811 * 297.76617 * 11 10 9 36 36 H 1.08998 * 109.76702 * 41.29088 * 12 11 10 37 37 H 1.09007 * 109.76175 * 162.00542 * 12 11 10 38 38 H 0.97000 * 119.99795 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.48077 * 80.58112 * 22 13 12 40 40 H 1.09001 * 109.48334 * 200.61682 * 22 13 12 41 41 H 1.09000 * 108.87817 * 31.47605 * 23 9 7 42 42 H 1.09004 * 108.87200 * 149.91162 * 23 9 7 43 43 H 1.07994 * 125.64280 * 180.02562 * 24 6 5 44 44 H 1.07995 * 120.43008 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2081 0.0000 4 7 3.5285 1.2032 0.0049 5 6 4.2083 0.0556 -0.0008 6 6 5.5864 -0.2332 -0.0022 7 6 6.6821 0.7405 0.0022 8 8 6.6490 1.6974 -0.7493 9 7 7.7263 0.5762 0.8384 10 6 7.8204 -0.6440 1.6745 11 6 8.7956 -1.5840 1.0997 12 6 10.1917 -0.9521 0.9703 13 7 10.1882 -0.1045 -0.1872 14 6 10.4684 -0.6523 -1.4106 15 1 10.1876 -1.6735 -1.6220 16 6 11.1134 0.1049 -2.3788 17 7 11.4510 1.3510 -2.1229 18 14 11.5021 -0.6447 -4.0451 19 1 11.0226 -2.0497 -4.0798 20 1 10.8233 0.1369 -5.1099 21 1 12.9696 -0.6173 -4.2701 22 6 9.8903 1.3514 -0.1011 23 6 8.7498 1.5808 0.9140 24 6 5.7111 -1.6340 -0.0085 25 7 4.5153 -2.1617 -0.0114 26 7 3.5553 -1.1441 -0.0061 27 6 2.1923 -1.1718 -0.0058 28 1 -0.3633 -0.0050 1.0278 29 1 -0.3634 0.8924 -0.5094 30 1 -0.3634 -0.8875 -0.5180 31 1 1.6779 2.1460 0.0005 32 1 8.1353 -0.3681 2.6809 33 1 6.8436 -1.1254 1.7213 34 1 8.8618 -2.4630 1.7408 35 1 8.4531 -1.8907 0.1114 36 1 10.4127 -0.3612 1.8592 37 1 10.9411 -1.7349 0.8526 38 1 11.9014 1.8802 -2.7996 39 1 10.7823 1.8863 0.2248 40 1 9.5839 1.7183 -1.0807 41 1 8.3022 2.5556 0.7202 42 1 9.1696 1.5815 1.9199 43 1 6.6411 -2.1830 -0.0107 44 1 1.6646 -2.1140 -0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982052953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = 127.830130 kcal Electronic energy + Delta-G solvation = -28898.077831 eV Core-core repulsion = 25047.227508 eV Total energy + Delta-G solvation = -3850.850322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56467 -39.54630 -38.27008 -36.71463 -34.52331 -34.22416 -32.84809 -32.17873 -30.94292 -29.78197 -27.79441 -26.95367 -25.35731 -25.01156 -23.92228 -23.04149 -22.07757 -21.51644 -19.67769 -19.08421 -18.07961 -17.33309 -16.91112 -16.48464 -16.25947 -15.73364 -15.32706 -14.93776 -14.33894 -14.14415 -13.94373 -13.91874 -13.62466 -13.52578 -13.21304 -13.05882 -12.79454 -12.77437 -12.54852 -12.28593 -12.09968 -11.62533 -11.50576 -11.21935 -11.04148 -10.82126 -10.68931 -10.48792 -10.30044 -10.04332 -9.97925 -9.68022 -9.60985 -9.55511 -9.20316 -8.35327 -7.99744 -7.79310 -6.47908 -5.66721 -3.17585 0.26572 0.60297 1.82281 2.27256 3.05618 3.44097 3.50825 3.52360 3.52915 3.66580 3.72029 4.01398 4.08156 4.35875 4.57750 4.58770 4.97289 5.01950 5.07976 5.16047 5.27981 5.33980 5.41128 5.47631 5.55145 5.60726 5.75640 5.76668 5.90253 6.03742 6.09833 6.23043 6.27850 6.34169 6.49207 6.54658 6.61911 6.83838 7.02827 7.20309 7.23144 7.46011 7.65013 7.84724 7.92561 8.12997 8.62080 8.95884 9.35228 10.00159 10.48509 11.39989 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.003592 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.770778 B = 7793.073855 C = 8025.465279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.194 4.194 3 C 0.182 3.818 4 N -0.442 5.442 5 C 0.296 3.704 6 C -0.259 4.259 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.579 5.579 10 C 0.119 3.881 11 C -0.178 4.178 12 C 0.165 3.835 13 N -0.591 5.591 14 C -0.256 4.256 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.904 5.904 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.167 3.833 23 C 0.093 3.907 24 C 0.126 3.874 25 N -0.313 5.313 26 N -0.307 5.307 27 C 0.160 3.840 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.181 0.819 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.209 0.791 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.255 -4.572 9.872 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.201 4.201 3 C -0.002 4.002 4 N -0.151 5.151 5 C 0.066 3.934 6 C -0.275 4.275 7 C 0.385 3.615 8 O -0.406 6.406 9 N -0.311 5.311 10 C -0.004 4.004 11 C -0.219 4.219 12 C 0.036 3.964 13 N -0.313 5.313 14 C -0.386 4.386 15 H 0.079 0.921 16 C -0.188 4.188 17 N -0.549 5.549 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.042 3.958 23 C -0.032 4.032 24 C -0.054 4.054 25 N -0.136 5.136 26 N -0.075 5.075 27 C 0.024 3.976 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.198 0.802 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -21.011 -4.382 9.382 23.424 hybrid contribution 0.248 -0.551 -1.010 1.177 sum -20.763 -4.933 8.372 22.925 Atomic orbital electron populations 1.20588 0.87599 1.03940 1.03180 1.20531 0.99000 0.92383 1.08170 1.23497 0.88921 0.98467 0.89322 1.68228 1.08655 1.24308 1.13944 1.20276 0.92976 0.81277 0.98903 1.19568 0.90269 0.94122 1.23522 1.16677 0.80683 0.84163 0.80022 1.90800 1.79074 1.32029 1.38723 1.47146 1.21942 1.20979 1.40995 1.20809 0.99551 0.86205 0.93836 1.22053 1.00724 0.98133 1.00975 1.20228 0.92316 0.93623 0.90228 1.43654 1.80517 1.04457 1.02668 1.19121 1.31041 0.97667 0.90788 0.92121 1.25207 0.97975 0.96500 0.99117 1.69966 1.43702 1.07556 1.33639 0.86253 0.77684 0.78648 0.84400 1.20379 1.21712 1.21647 1.21856 0.91694 0.84181 0.98054 1.21907 0.90236 0.90856 1.00203 1.24438 0.96503 0.92439 0.91995 1.77594 0.96295 1.08153 1.31538 1.46970 1.05955 1.07898 1.46695 1.21892 0.79494 1.01086 0.95121 0.90413 0.90218 0.90868 0.80206 0.91708 0.91308 0.92342 0.91560 0.94790 0.93586 0.93719 0.94454 0.89843 0.91320 0.92789 0.77505 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.30 10.03 36.01 0.36 0.06 16 2 C -0.19 -1.45 5.86 -104.87 -0.61 -2.06 16 3 C 0.18 1.78 10.97 -17.05 -0.19 1.60 16 4 N -0.44 -6.87 10.47 -12.00 -0.13 -6.99 16 5 C 0.30 4.99 7.90 -155.84 -1.23 3.76 16 6 C -0.26 -4.81 5.21 -104.66 -0.54 -5.36 16 7 C 0.60 12.97 7.51 -12.89 -0.10 12.87 16 8 O -0.53 -13.65 16.70 5.17 0.09 -13.57 16 9 N -0.58 -11.39 2.47 -178.54 -0.44 -11.83 16 10 C 0.12 1.86 5.13 -5.91 -0.03 1.83 16 11 C -0.18 -2.93 5.16 -29.13 -0.15 -3.08 16 12 C 0.17 3.31 5.63 -5.23 -0.03 3.28 16 13 N -0.59 -14.73 2.53 -172.29 -0.44 -15.16 16 14 C -0.26 -7.12 9.23 -15.06 -0.14 -7.25 16 15 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 16 C 0.01 0.31 5.24 -17.43 -0.09 0.22 16 17 N -0.90 -27.00 10.60 55.49 0.59 -26.41 16 18 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C 0.17 4.19 5.13 -2.01 -0.01 4.18 16 23 C 0.09 1.92 5.17 -4.84 -0.03 1.89 16 24 C 0.13 2.02 9.53 -17.13 -0.16 1.86 16 25 N -0.31 -4.75 12.58 30.76 0.39 -4.36 16 26 N -0.31 -4.32 3.86 -11.97 -0.05 -4.37 16 27 C 0.16 1.48 10.94 -16.45 -0.18 1.30 16 28 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 30 H 0.07 0.16 8.08 -51.93 -0.42 -0.26 16 31 H 0.18 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.07 0.99 4.89 -51.93 -0.25 0.73 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.22 6.27 -51.93 -0.33 0.90 16 36 H 0.03 0.63 7.58 -51.93 -0.39 0.24 16 37 H 0.05 0.93 8.02 -51.92 -0.42 0.52 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.04 0.98 7.96 -51.93 -0.41 0.57 16 40 H 0.08 2.46 6.59 -51.93 -0.34 2.12 16 41 H 0.07 1.46 7.44 -51.93 -0.39 1.08 16 42 H 0.05 0.97 7.73 -51.93 -0.40 0.57 16 43 H 0.21 3.03 5.32 -52.49 -0.28 2.75 16 44 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -37.43 353.31 -8.53 -45.96 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.71 Total: -1.34 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -3.13 Total: 15.10 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.07 Total: -69.12 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.43 -8.53 -45.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982052953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.787 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds