Wall clock time and date at job start Tue Mar 31 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30897 * 119.96812 * 2 1 4 4 C 1.34150 * 121.17091 * 179.97438 * 3 2 1 5 5 C 1.38704 * 132.25100 * 180.02562 * 4 3 2 6 6 C 1.38845 * 107.67601 * 180.02562 * 5 4 3 7 7 N 1.31288 * 108.98837 * 359.97438 * 6 5 4 8 8 N 1.37265 * 120.90218 * 0.02562 * 4 3 2 9 9 C 1.36078 * 119.97293 * 0.02579 * 8 4 3 10 10 C 1.38067 * 118.89035 * 359.68441 * 9 8 4 11 11 C 1.47600 * 120.50449 * 180.29343 * 10 9 8 12 12 O 1.21585 * 119.99752 * 120.92594 * 11 10 9 13 13 N 1.34774 * 120.00526 * 300.92983 * 11 10 9 14 14 C 1.48210 * 119.97260 * 184.46364 * 13 11 10 15 15 C 1.47132 * 110.34697 * 102.46108 * 14 13 11 16 16 C 1.53803 * 111.84112 * 58.29461 * 15 14 13 17 17 N 1.43465 * 107.96137 * 281.67169 * 16 15 14 18 18 C 1.36932 * 118.94261 * 273.62620 * 17 16 15 19 19 H 1.08001 * 119.99717 * 29.25064 * 18 17 16 20 20 C 1.38813 * 120.00082 * 209.25217 * 18 17 16 21 21 N 1.31613 * 120.00115 * 11.56433 * 20 18 17 22 22 Si 1.86802 * 119.99584 * 191.55961 * 20 18 17 23 23 H 1.48493 * 109.47370 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47023 * 120.00474 * 22 20 18 25 25 H 1.48503 * 109.47009 * 239.99982 * 22 20 18 26 26 C 1.48856 * 122.11873 * 93.65305 * 17 16 15 27 27 C 1.43623 * 119.96634 * 4.18089 * 13 11 10 28 28 H 1.08999 * 109.47122 * 86.20465 * 1 2 3 29 29 H 1.08993 * 109.46951 * 206.20542 * 1 2 3 30 30 H 1.08999 * 109.46797 * 326.20504 * 1 2 3 31 31 H 1.08000 * 126.16042 * 359.95340 * 5 4 3 32 32 H 1.07998 * 125.50421 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.55643 * 179.97438 * 9 8 4 34 34 H 1.09009 * 109.32147 * 222.72878 * 14 13 11 35 35 H 1.08994 * 109.32501 * 342.36529 * 14 13 11 36 36 H 1.09003 * 109.01158 * 178.89777 * 15 14 13 37 37 H 1.08997 * 109.00937 * 297.76333 * 15 14 13 38 38 H 1.08999 * 109.75884 * 41.28751 * 16 15 14 39 39 H 1.09000 * 109.76523 * 162.00510 * 16 15 14 40 40 H 0.96996 * 119.99755 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.48426 * 80.57973 * 26 17 16 42 42 H 1.09000 * 109.48383 * 200.61645 * 26 17 16 43 43 H 1.08992 * 108.87866 * 31.47355 * 27 13 11 44 44 H 1.09000 * 108.87028 * 149.90992 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1609 1.1340 0.0000 4 6 3.5021 1.1621 0.0005 5 6 4.4130 2.2082 0.0011 6 6 5.6875 1.6574 0.0009 7 7 5.5871 0.3483 0.0007 8 7 4.2316 -0.0006 0.0005 9 6 3.5944 -1.2030 -0.0005 10 6 2.2140 -1.2263 0.0051 11 6 1.4864 -2.5105 0.0107 12 8 0.7195 -2.7707 0.9176 13 7 1.6720 -3.3947 -0.9894 14 6 0.8688 -4.6394 -1.0359 15 6 -0.2051 -4.5182 -2.0343 16 6 0.3494 -4.2229 -3.4381 17 7 0.6865 -2.8297 -3.4966 18 6 -0.2853 -1.9264 -3.8353 19 1 -1.3193 -2.1327 -3.6016 20 6 0.0586 -0.7456 -4.4791 21 7 1.2713 -0.5910 -4.9667 22 14 -1.1999 0.6238 -4.6534 23 1 -2.4785 0.2039 -4.0258 24 1 -0.6959 1.8478 -3.9802 25 1 -1.4257 0.9082 -6.0933 26 6 2.0589 -2.3344 -3.2014 27 6 2.6438 -3.1270 -2.0124 28 1 -0.3633 0.0680 -1.0254 29 1 -0.3633 -0.9220 0.4538 30 1 -0.3633 0.8540 0.5716 31 1 4.1739 3.2614 0.0005 32 1 6.6120 2.2156 0.0008 33 1 4.1591 -2.1236 -0.0009 34 1 1.5152 -5.4761 -1.3011 35 1 0.4278 -4.8209 -0.0558 36 1 -0.7689 -5.4507 -2.0643 37 1 -0.8735 -3.7090 -1.7404 38 1 1.2400 -4.8255 -3.6168 39 1 -0.4070 -4.4517 -4.1889 40 1 1.5117 0.2343 -5.4161 41 1 2.6915 -2.4719 -4.0783 42 1 2.0162 -1.2755 -2.9462 43 1 3.4622 -2.5517 -1.5796 44 1 3.0376 -4.0741 -2.3811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983197007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:08 Heat of formation + Delta-G solvation = 126.546841 kcal Electronic energy + Delta-G solvation = -30013.693822 eV Core-core repulsion = 26162.787852 eV Total energy + Delta-G solvation = -3850.905970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27315 -40.14559 -37.96952 -37.01230 -34.61907 -34.08222 -32.90526 -31.78500 -30.98409 -29.54259 -27.93023 -27.75165 -25.70046 -24.56084 -23.81262 -22.77829 -21.96754 -21.34463 -19.88134 -19.22206 -18.62374 -17.42858 -16.55975 -16.35169 -15.92511 -15.84624 -15.53244 -15.14042 -14.47115 -14.22784 -14.04446 -13.85005 -13.54470 -13.40239 -13.31388 -13.13607 -12.72454 -12.53608 -12.37707 -12.11307 -11.90104 -11.51849 -11.50210 -11.25304 -11.14660 -11.02055 -10.86060 -10.62821 -10.33680 -10.31524 -10.07731 -9.95031 -9.76299 -9.54241 -9.25721 -8.58646 -8.28963 -7.82068 -6.73768 -5.87502 -3.34464 0.50245 0.82445 1.98480 2.56093 2.75064 3.24096 3.31601 3.40483 3.41756 3.55276 3.87793 4.09257 4.22031 4.42515 4.61529 5.02060 5.11677 5.16792 5.23400 5.28406 5.41545 5.47946 5.52884 5.64771 5.77653 5.81585 5.84835 5.89562 5.95274 5.99699 6.01863 6.15120 6.32386 6.34717 6.40279 6.47372 6.53267 6.70479 6.75033 6.94059 7.19977 7.34119 7.42391 7.66012 7.74111 7.77330 8.28554 8.38236 9.12435 9.78925 10.26267 11.20334 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.006248 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.045332 B = 4480.392993 C = 5654.051136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.264 3.736 3 N -0.472 5.472 4 C 0.276 3.724 5 C -0.275 4.275 6 C 0.095 3.905 7 N -0.320 5.320 8 N -0.314 5.314 9 C 0.195 3.805 10 C -0.209 4.209 11 C 0.586 3.414 12 O -0.536 6.536 13 N -0.572 5.572 14 C 0.130 3.870 15 C -0.172 4.172 16 C 0.162 3.838 17 N -0.588 5.588 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.905 5.905 22 Si 0.891 3.109 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.289 1.289 26 C 0.169 3.831 27 C 0.070 3.930 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.198 0.802 33 H 0.183 0.817 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -2.743 8.990 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 N -0.184 5.184 4 C 0.049 3.951 5 C -0.306 4.306 6 C -0.083 4.083 7 N -0.143 5.143 8 N -0.084 5.084 9 C 0.059 3.941 10 C -0.220 4.220 11 C 0.371 3.629 12 O -0.414 6.414 13 N -0.302 5.302 14 C 0.009 3.991 15 C -0.213 4.213 16 C 0.033 3.967 17 N -0.310 5.310 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.189 4.189 21 N -0.549 5.549 22 Si 0.721 3.279 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.216 1.216 26 C 0.043 3.957 27 C -0.056 4.056 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.179 0.821 32 H 0.214 0.786 33 H 0.200 0.800 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.685 -2.904 9.348 11.320 hybrid contribution -0.435 0.943 -0.483 1.145 sum 5.251 -1.961 8.865 10.488 Atomic orbital electron populations 1.21064 0.86407 1.05022 1.05282 1.21792 0.97915 0.85462 0.84811 1.68043 1.03771 1.28035 1.18592 1.20837 0.88195 0.86986 0.99045 1.20927 0.89610 0.98668 1.21408 1.23830 0.98854 0.91026 0.94634 1.77840 0.89103 1.15498 1.31886 1.46997 1.07694 1.05959 1.47731 1.22233 0.91520 0.88516 0.91870 1.20568 0.92006 0.97241 1.12139 1.17339 0.81511 0.81825 0.82215 1.90750 1.37785 1.76587 1.36287 1.47369 1.38842 1.20393 1.23568 1.20657 0.93442 0.84171 1.00819 1.21896 0.98587 1.01381 0.99415 1.20305 0.97150 0.86351 0.92860 1.43584 1.07386 1.00768 1.79265 1.19152 0.89081 0.98977 1.31435 0.91736 1.25075 0.96554 0.99844 0.97430 1.69965 1.18882 1.26050 1.39980 0.86387 0.81212 0.82602 0.77710 1.20018 1.21250 1.21585 1.21729 0.85669 0.96934 0.91401 1.22361 0.90692 1.01413 0.91110 0.87915 0.88380 0.89700 0.82139 0.78576 0.79995 0.91615 0.89977 0.92268 0.91160 0.94909 0.93407 0.93653 0.93819 0.91310 0.92222 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.90 36.01 0.36 -1.67 16 2 C 0.26 4.78 6.87 -81.73 -0.56 4.22 16 3 N -0.47 -8.79 10.37 -8.17 -0.08 -8.88 16 4 C 0.28 4.87 7.91 -155.33 -1.23 3.64 16 5 C -0.28 -4.05 10.91 -39.18 -0.43 -4.48 16 6 C 0.10 1.23 11.95 -17.56 -0.21 1.02 16 7 N -0.32 -4.94 12.65 30.49 0.39 -4.56 16 8 N -0.31 -5.23 3.88 -11.68 -0.05 -5.28 16 9 C 0.20 3.01 9.03 -15.73 -0.14 2.87 16 10 C -0.21 -3.56 5.00 -104.88 -0.52 -4.08 16 11 C 0.59 10.12 6.40 -12.44 -0.08 10.04 16 12 O -0.54 -10.14 14.91 5.29 0.08 -10.06 16 13 N -0.57 -9.25 2.47 -178.18 -0.44 -9.69 16 14 C 0.13 1.89 5.72 -5.92 -0.03 1.86 16 15 C -0.17 -2.75 5.64 -29.13 -0.16 -2.91 16 16 C 0.16 3.00 5.63 -5.23 -0.03 2.97 16 17 N -0.59 -13.16 2.52 -172.29 -0.43 -13.59 16 18 C -0.26 -6.51 9.23 -15.06 -0.14 -6.65 16 19 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16 20 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 21 N -0.90 -25.04 11.01 55.49 0.61 -24.43 16 22 Si 0.89 21.14 29.57 -169.99 -5.03 16.12 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.17 3.60 5.15 -2.00 -0.01 3.59 16 27 C 0.07 1.13 4.97 -4.83 -0.02 1.10 16 28 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 29 H 0.10 1.66 5.87 -51.93 -0.30 1.35 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.18 2.22 7.12 -52.49 -0.37 1.85 16 34 H 0.07 0.80 8.06 -51.92 -0.42 0.38 16 35 H 0.08 1.20 7.08 -51.93 -0.37 0.83 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 38 H 0.03 0.56 7.58 -51.93 -0.39 0.16 16 39 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.04 1.03 7.95 -51.93 -0.41 0.61 16 42 H 0.07 1.71 6.74 -51.93 -0.35 1.36 16 43 H 0.06 0.89 4.24 -51.93 -0.22 0.67 16 44 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -31.21 353.01 -8.67 -39.88 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.73 Total: 3.47 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -3.30 Total: 11.70 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.01 Total: -66.42 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.21 -8.67 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983197007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.428 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds