Wall clock time and date at job start Tue Mar 31 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30282 * 124.97467 * 2 1 4 4 C 1.34650 * 109.67194 * 179.73052 * 3 2 1 5 5 C 1.40829 * 107.26010 * 0.42319 * 4 3 2 6 6 N 1.32116 * 120.46673 * 179.79909 * 5 4 3 7 7 C 1.31724 * 121.94330 * 359.72204 * 6 5 4 8 8 C 1.38334 * 121.55067 * 359.97438 * 7 6 5 9 9 C 1.39638 * 119.37821 * 359.97438 * 8 7 6 10 10 C 1.47761 * 121.07949 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00200 * 197.23868 * 10 9 8 12 12 N 1.34776 * 119.99715 * 16.96561 * 10 9 8 13 13 C 1.47428 * 125.65051 * 173.25275 * 12 10 9 14 14 C 1.55127 * 104.72444 * 155.81819 * 13 12 10 15 15 C 1.55160 * 101.48546 * 37.29489 * 14 13 12 16 16 H 1.08996 * 110.71769 * 82.69598 * 15 14 13 17 17 N 1.46498 * 110.71734 * 205.97140 * 15 14 13 18 18 C 1.36941 * 120.00035 * 268.52139 * 17 15 14 19 19 H 1.08003 * 119.99657 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00457 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99581 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00179 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47157 * 60.00274 * 22 20 18 24 24 H 1.48511 * 109.47028 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47146 * 299.99942 * 22 20 18 26 26 C 1.47028 * 125.64695 * 353.55912 * 12 10 9 27 27 H 1.08992 * 109.88424 * 300.59645 * 26 12 10 28 28 C 1.52999 * 109.87896 * 61.60945 * 26 12 10 29 29 N 1.35988 * 124.96829 * 180.02562 * 2 1 3 30 30 H 0.96998 * 126.36053 * 359.97377 * 29 2 1 31 31 H 1.09005 * 109.47338 * 269.99756 * 1 2 3 32 32 H 1.08998 * 109.46903 * 30.00108 * 1 2 3 33 33 H 1.09004 * 109.46951 * 149.99824 * 1 2 3 34 34 H 1.08004 * 119.22288 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.31516 * 179.97438 * 8 7 6 36 36 H 1.08999 * 110.36293 * 274.74802 * 13 12 10 37 37 H 1.09003 * 110.36288 * 37.06861 * 13 12 10 38 38 H 1.09003 * 111.18758 * 279.19173 * 14 13 12 39 39 H 1.08995 * 110.94020 * 155.28877 * 14 13 12 40 40 H 0.96997 * 120.00400 * 88.52733 * 17 15 14 41 41 H 0.96999 * 119.99345 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.47368 * 78.56923 * 28 26 12 43 43 H 1.09004 * 109.47022 * 198.56777 * 28 26 12 44 44 H 1.09004 * 109.47460 * 318.56290 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2538 1.0675 0.0000 4 6 3.5525 0.7122 0.0060 5 6 3.6007 -0.6953 0.0000 6 7 4.7617 -1.3258 0.0000 7 6 5.9076 -0.6762 0.0000 8 6 5.9559 0.7063 -0.0005 9 6 4.7638 1.4334 -0.0015 10 6 4.7715 2.9110 -0.0015 11 8 3.7690 3.5241 0.3096 12 7 5.8918 3.5789 -0.3411 13 6 6.0014 5.0383 -0.5192 14 6 7.5011 5.3534 -0.2782 15 6 8.1840 4.1204 -0.9270 16 1 8.2771 4.2538 -2.0047 17 7 9.4935 3.8734 -0.3186 18 6 10.6173 4.4393 -0.8590 19 1 10.5381 5.0674 -1.7341 20 6 11.8583 4.2049 -0.2830 21 7 11.9549 3.4382 0.7825 22 14 13.3912 4.9764 -1.0207 23 1 13.2599 6.4554 -1.0003 24 1 14.5794 4.5744 -0.2256 25 1 13.5531 4.5130 -2.4222 26 6 7.2055 2.9722 -0.6015 27 1 7.5456 2.4313 0.2815 28 6 7.1103 2.0165 -1.7924 29 7 2.2864 -1.1144 -0.0005 30 1 1.9759 -2.0333 -0.0006 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 6.8311 -1.2362 0.0004 35 1 6.9067 1.2185 -0.0001 36 1 5.7100 5.3199 -1.5311 37 1 5.3827 5.5573 0.2130 38 1 7.7257 5.4090 0.7870 39 1 7.7923 6.2731 -0.7853 40 1 9.5647 3.3089 0.4670 41 1 12.8221 3.2741 1.1849 42 1 7.1151 2.5896 -2.7195 43 1 7.9619 1.3362 -1.7813 44 1 6.1860 1.4425 -1.7248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986585599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:22 Heat of formation + Delta-G solvation = 106.246598 kcal Electronic energy + Delta-G solvation = -28263.280962 eV Core-core repulsion = 24411.494708 eV Total energy + Delta-G solvation = -3851.786255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.63384 -40.37778 -38.34466 -37.47612 -34.28648 -33.92415 -32.55684 -31.73115 -31.46804 -30.20580 -29.19926 -28.17205 -25.45014 -24.36261 -23.28861 -23.13632 -22.09982 -21.29038 -20.35052 -19.66703 -18.37057 -17.63093 -17.27077 -16.79170 -16.15582 -15.80289 -15.66622 -14.91669 -14.78186 -14.62822 -14.00445 -13.77320 -13.75846 -13.64057 -13.33669 -13.14443 -13.01523 -12.83700 -12.38721 -12.30433 -12.04183 -11.79125 -11.58773 -11.30954 -11.16967 -11.04957 -10.89568 -10.85415 -10.64551 -10.30832 -10.13873 -9.98709 -9.77604 -9.19050 -9.00330 -8.80938 -8.57200 -8.36851 -7.09674 -5.87099 -3.17657 0.29525 1.04443 2.26895 2.52986 2.97836 3.07518 3.38923 3.44247 3.44646 3.75183 3.80522 4.14838 4.42013 4.49918 4.54838 4.70254 4.86327 4.93465 4.98991 5.06659 5.14324 5.24720 5.29369 5.44107 5.46891 5.52215 5.59193 5.67976 5.72727 5.79860 5.85199 5.88356 5.99630 6.14107 6.24005 6.25627 6.40620 6.43922 6.52636 6.61785 6.87311 6.87606 7.59796 7.61106 7.67424 7.71083 8.29987 8.34027 9.42053 9.94349 10.29274 11.34867 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.002969 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.586882 B = 9429.947418 C =10338.611838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.292 3.708 3 N -0.463 5.463 4 C 0.059 3.941 5 C 0.226 3.774 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.156 4.156 9 C -0.042 4.042 10 C 0.571 3.429 11 O -0.516 6.516 12 N -0.604 5.604 13 C 0.108 3.892 14 C -0.156 4.156 15 C 0.179 3.821 16 H 0.071 0.929 17 N -0.714 5.714 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.106 3.894 27 H 0.088 0.912 28 C -0.177 4.177 29 N -0.587 5.587 30 H 0.427 0.573 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.221 -9.590 -2.938 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 N -0.182 5.182 4 C -0.065 4.065 5 C -0.011 4.011 6 N -0.180 5.180 7 C -0.041 4.041 8 C -0.178 4.178 9 C -0.055 4.055 10 C 0.359 3.641 11 O -0.391 6.391 12 N -0.338 5.338 13 C -0.015 4.015 14 C -0.198 4.198 15 C 0.067 3.933 16 H 0.089 0.911 17 N -0.354 5.354 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.002 3.998 27 H 0.106 0.894 28 C -0.234 4.234 29 N -0.203 5.203 30 H 0.266 0.734 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.989 -9.228 -2.841 22.199 hybrid contribution 1.175 -0.289 -0.068 1.212 sum -18.814 -9.518 -2.909 21.284 Atomic orbital electron populations 1.20420 0.83448 1.04979 1.04582 1.23912 0.96001 0.80310 0.97260 1.70301 1.00540 1.26807 1.20600 1.19189 0.92135 0.90988 1.04161 1.18865 0.86190 0.90816 1.05219 1.66183 0.96078 1.41637 1.14126 1.22602 0.94166 0.91429 0.95949 1.23599 1.00405 0.96065 0.97744 1.19525 0.90663 0.93654 1.01672 1.17545 0.82351 0.86096 0.78081 1.90809 1.32481 1.68824 1.46995 1.48415 1.08922 1.08589 1.67858 1.22329 0.98425 0.79727 1.00978 1.23637 0.92148 1.01182 1.02789 1.21285 0.85302 0.89705 0.96995 0.91112 1.42320 1.00225 1.59022 1.33826 1.19153 0.85197 1.23979 1.09260 0.91003 1.24748 0.97678 1.00139 0.97910 1.69644 1.24084 1.41337 1.22683 0.86262 0.82745 0.78865 0.78245 1.21192 1.21685 1.21170 1.22379 0.83181 0.96311 0.97914 0.89425 1.22769 1.02673 0.99841 0.98145 1.42701 1.03614 1.10389 1.63573 0.73371 0.88978 0.88072 0.89950 0.80782 0.80129 0.91716 0.90803 0.90563 0.90392 0.78023 0.93286 0.91932 0.90334 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.04 16 2 C 0.29 3.15 8.08 -154.73 -1.25 1.90 16 3 N -0.46 -7.25 10.76 -8.07 -0.09 -7.34 16 4 C 0.06 0.95 6.85 -84.62 -0.58 0.37 16 5 C 0.23 3.11 8.46 -155.63 -1.32 1.79 16 6 N -0.47 -6.21 10.35 -12.30 -0.13 -6.33 16 7 C 0.12 1.48 11.14 -17.56 -0.20 1.28 16 8 C -0.16 -2.07 6.37 -39.02 -0.25 -2.32 16 9 C -0.04 -0.68 5.07 -104.45 -0.53 -1.21 16 10 C 0.57 10.22 7.62 -12.37 -0.09 10.12 16 11 O -0.52 -10.76 16.58 5.31 0.09 -10.67 16 12 N -0.60 -9.77 3.06 -164.01 -0.50 -10.27 16 13 C 0.11 1.66 6.95 -2.41 -0.02 1.64 16 14 C -0.16 -2.58 6.78 -24.46 -0.17 -2.74 16 15 C 0.18 3.18 3.13 -66.09 -0.21 2.97 16 16 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 17 N -0.71 -16.02 5.22 -51.65 -0.27 -16.29 16 18 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 22 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.11 1.63 2.50 -66.95 -0.17 1.47 16 27 H 0.09 1.36 5.80 -51.93 -0.30 1.06 16 28 C -0.18 -2.39 7.76 37.16 0.29 -2.10 16 29 N -0.59 -5.89 6.23 -9.43 -0.06 -5.95 16 30 H 0.43 2.65 8.96 -40.82 -0.37 2.28 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.18 2.31 2.75 -52.49 -0.14 2.17 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.39 9.21 7.57 -40.82 -0.31 8.90 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.06 0.84 7.64 -51.93 -0.40 0.45 16 43 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.07 0.88 4.35 -51.93 -0.23 0.66 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -34.58 356.52 -9.71 -44.28 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.47 Total: 10.19 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -4.35 Total: 6.43 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.32 Total: -71.84 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.58 -9.71 -44.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986585599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.530 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds