Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30283 * 124.96928 * 2 1 4 4 C 1.34652 * 109.67130 * 180.02562 * 3 2 1 5 5 C 1.40836 * 107.25899 * 0.02562 * 4 3 2 6 6 N 1.32109 * 120.46351 * 179.97438 * 5 4 3 7 7 C 1.31733 * 121.94645 * 359.97438 * 6 5 4 8 8 C 1.38330 * 121.54906 * 359.72011 * 7 6 5 9 9 C 1.39635 * 119.37448 * 0.56262 * 8 7 6 10 10 C 1.47763 * 121.07357 * 179.72797 * 9 8 7 11 11 O 1.21562 * 120.00105 * 177.53922 * 10 9 8 12 12 N 1.34777 * 120.00329 * 357.54271 * 10 9 8 13 13 C 1.47422 * 125.65038 * 174.52916 * 12 10 9 14 14 C 1.54917 * 104.83121 * 204.08858 * 13 12 10 15 15 C 1.55150 * 101.58053 * 322.99223 * 14 13 12 16 16 H 1.08999 * 110.72153 * 276.95692 * 15 14 13 17 17 N 1.46504 * 110.72025 * 153.86206 * 15 14 13 18 18 C 1.36944 * 119.99795 * 86.44995 * 17 15 14 19 19 H 1.07999 * 119.99956 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00035 * 180.02562 * 18 17 15 21 21 N 1.31628 * 119.99975 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00328 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47503 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47075 * 59.99539 * 22 20 18 25 25 H 1.48499 * 109.46851 * 299.99901 * 22 20 18 26 26 C 1.47027 * 125.64641 * 354.48440 * 12 10 9 27 27 H 1.09001 * 109.87851 * 59.56089 * 26 12 10 28 28 C 1.52996 * 109.88145 * 298.39771 * 26 12 10 29 29 N 1.35988 * 124.97510 * 180.02562 * 2 1 3 30 30 H 0.96996 * 126.35380 * 0.02562 * 29 2 1 31 31 H 1.09005 * 109.47055 * 269.97479 * 1 2 3 32 32 H 1.08997 * 109.47084 * 29.97149 * 1 2 3 33 33 H 1.08998 * 109.46948 * 149.98043 * 1 2 3 34 34 H 1.08008 * 119.22000 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.31423 * 180.29327 * 8 7 6 36 36 H 1.09005 * 110.36853 * 85.25538 * 13 12 10 37 37 H 1.08994 * 110.46093 * 322.97910 * 13 12 10 38 38 H 1.08996 * 111.00443 * 204.91765 * 14 13 12 39 39 H 1.08996 * 110.99818 * 81.06784 * 14 13 12 40 40 H 0.96997 * 120.00485 * 266.45734 * 17 15 14 41 41 H 0.97001 * 119.99464 * 359.97438 * 21 20 18 42 42 H 1.08997 * 109.47609 * 285.77218 * 28 26 12 43 43 H 1.09002 * 109.47189 * 45.77735 * 28 26 12 44 44 H 1.09005 * 109.46964 * 165.77110 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7124 -0.0006 5 6 3.6007 -0.6952 -0.0015 6 7 4.7617 -1.3256 -0.0028 7 6 5.9076 -0.6759 -0.0036 8 6 5.9559 0.7066 -0.0091 9 6 4.7637 1.4335 -0.0018 10 6 4.7715 2.9111 -0.0012 11 8 3.7226 3.5245 -0.0400 12 7 5.9413 3.5789 0.0423 13 6 6.1009 5.0405 -0.0658 14 6 7.5495 5.2446 -0.5756 15 6 8.3050 4.1144 0.1720 16 1 8.5693 4.4293 1.1814 17 7 9.5002 3.7094 -0.5723 18 6 10.6801 4.3803 -0.3902 19 1 10.7296 5.2076 0.3023 20 6 11.8124 3.9970 -1.0957 21 7 11.7521 2.9884 -1.9393 22 14 13.4220 4.9116 -0.8469 23 1 14.4709 4.3114 -1.7099 24 1 13.8343 4.8098 0.5761 25 1 13.2405 6.3404 -1.2086 26 6 7.2697 2.9705 0.2063 27 1 7.4610 2.2727 -0.6089 28 6 7.3454 2.2403 1.5486 29 7 2.2865 -1.1143 -0.0005 30 1 1.9760 -2.0332 -0.0013 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 6.8312 -1.2359 -0.0051 35 1 6.9067 1.2188 -0.0144 36 1 5.9727 5.5093 0.9099 37 1 5.3863 5.4501 -0.7795 38 1 7.9301 6.2249 -0.2890 39 1 7.6069 5.1053 -1.6551 40 1 9.4558 2.9663 -1.1940 41 1 10.9165 2.5128 -2.0677 42 1 7.4258 2.9693 2.3549 43 1 6.4449 1.6421 1.6881 44 1 8.2194 1.5889 1.5592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986585604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = 109.016333 kcal Electronic energy + Delta-G solvation = -28305.671450 eV Core-core repulsion = 24454.005300 eV Total energy + Delta-G solvation = -3851.666150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.66069 -40.45768 -38.37325 -37.57835 -34.52575 -34.00724 -32.62120 -31.76076 -31.53619 -30.33334 -29.06213 -28.17777 -25.30064 -24.43574 -23.29882 -23.18017 -22.17725 -21.34881 -20.50328 -19.72552 -18.48359 -17.63016 -17.42876 -16.82192 -16.19667 -15.88262 -15.84668 -15.03390 -14.87589 -14.60176 -14.15343 -13.78361 -13.77130 -13.62899 -13.53215 -13.13695 -13.06226 -12.81129 -12.63520 -12.35231 -12.18578 -11.82862 -11.63892 -11.43623 -11.19389 -10.99676 -10.92480 -10.68493 -10.64126 -10.27634 -10.06750 -10.00319 -9.31338 -9.19852 -9.02220 -8.93330 -8.62885 -8.43195 -7.17425 -6.19655 -3.22324 0.24432 0.99873 2.23692 2.49844 2.95734 2.98786 3.48032 3.50431 3.68134 3.72148 3.78097 4.10487 4.38033 4.49650 4.58005 4.65306 4.79413 4.89286 4.92973 5.04472 5.05937 5.18124 5.20688 5.37193 5.42599 5.46053 5.54067 5.60829 5.67094 5.72319 5.78847 5.81685 5.89442 6.02273 6.12672 6.16822 6.32815 6.37827 6.43396 6.54410 6.78814 6.84496 7.56575 7.62384 7.64142 7.71716 8.28052 8.65022 9.08036 9.94637 10.07278 11.28065 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.002994 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.660821 B = 9349.618727 C =10255.480665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.292 3.708 3 N -0.460 5.460 4 C 0.058 3.942 5 C 0.228 3.772 6 N -0.467 5.467 7 C 0.127 3.873 8 C -0.176 4.176 9 C -0.039 4.039 10 C 0.570 3.430 11 O -0.513 6.513 12 N -0.603 5.603 13 C 0.109 3.891 14 C -0.155 4.155 15 C 0.184 3.816 16 H 0.070 0.930 17 N -0.726 5.726 18 C -0.335 4.335 19 H 0.067 0.933 20 C -0.040 4.040 21 N -0.940 5.940 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.295 1.295 26 C 0.104 3.896 27 H 0.090 0.910 28 C -0.175 4.175 29 N -0.587 5.587 30 H 0.427 0.573 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.190 0.810 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.368 0.632 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.720 -8.164 5.572 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 N -0.180 5.180 4 C -0.066 4.066 5 C -0.009 4.009 6 N -0.181 5.181 7 C -0.038 4.038 8 C -0.197 4.197 9 C -0.052 4.052 10 C 0.358 3.642 11 O -0.388 6.388 12 N -0.337 5.337 13 C -0.013 4.013 14 C -0.196 4.196 15 C 0.072 3.928 16 H 0.088 0.912 17 N -0.368 5.368 18 C -0.465 4.465 19 H 0.085 0.915 20 C -0.238 4.238 21 N -0.585 5.585 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 C 0.000 4.000 27 H 0.107 0.893 28 C -0.232 4.232 29 N -0.202 5.202 30 H 0.267 0.733 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.206 0.794 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.033 -7.624 5.229 20.264 hybrid contribution -1.441 -0.785 0.272 1.663 sum -19.473 -8.409 5.501 21.913 Atomic orbital electron populations 1.20423 0.83402 1.05047 1.04565 1.23944 0.96039 0.80294 0.97236 1.70326 1.00493 1.26721 1.20467 1.19207 0.92181 0.90991 1.04188 1.18876 0.86206 0.90826 1.05007 1.66186 0.96097 1.41666 1.14129 1.22627 0.94148 0.91492 0.95576 1.24003 1.00894 0.96211 0.98583 1.19541 0.90672 0.93552 1.01391 1.17571 0.82740 0.86141 0.77779 1.90820 1.30337 1.68794 1.48856 1.48411 1.05470 1.08428 1.71424 1.22281 0.98364 0.79679 1.01011 1.23570 0.92669 1.01639 1.01740 1.21215 0.85686 0.89985 0.95879 0.91226 1.42340 1.05943 1.39002 1.49545 1.19984 0.88685 1.13629 1.24218 0.91513 1.25774 1.01624 0.99698 0.96717 1.70910 1.28397 1.21905 1.37246 0.83252 0.75497 0.74731 0.75562 1.21035 1.22175 1.22197 1.22377 0.83036 0.96988 0.97637 0.89287 1.22640 1.02688 1.01203 0.96706 1.42712 1.03598 1.10429 1.63496 0.73339 0.88986 0.88025 0.89917 0.80812 0.79358 0.91623 0.90857 0.90257 0.90715 0.79818 0.93345 0.91665 0.91760 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.29 3.16 8.08 -154.73 -1.25 1.91 16 3 N -0.46 -7.25 10.63 -8.07 -0.09 -7.34 16 4 C 0.06 0.94 6.85 -84.61 -0.58 0.36 16 5 C 0.23 3.16 8.46 -155.65 -1.32 1.84 16 6 N -0.47 -6.27 10.35 -12.30 -0.13 -6.40 16 7 C 0.13 1.54 11.14 -17.56 -0.20 1.34 16 8 C -0.18 -2.34 6.66 -39.03 -0.26 -2.60 16 9 C -0.04 -0.62 5.39 -104.45 -0.56 -1.19 16 10 C 0.57 10.17 7.56 -12.37 -0.09 10.08 16 11 O -0.51 -10.65 16.49 5.31 0.09 -10.56 16 12 N -0.60 -9.74 3.07 -164.36 -0.50 -10.25 16 13 C 0.11 1.68 6.89 -2.53 -0.02 1.67 16 14 C -0.15 -2.59 6.77 -24.58 -0.17 -2.75 16 15 C 0.18 3.29 3.11 -66.10 -0.21 3.09 16 16 H 0.07 1.27 7.60 -51.93 -0.39 0.87 16 17 N -0.73 -16.29 5.25 -51.66 -0.27 -16.56 16 18 C -0.33 -8.66 9.98 -15.06 -0.15 -8.81 16 19 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 20 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 21 N -0.94 -27.42 13.70 55.49 0.76 -26.66 16 22 Si 1.08 24.65 29.92 -169.99 -5.09 19.56 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.10 1.58 2.45 -66.95 -0.16 1.42 16 27 H 0.09 1.36 5.56 -51.93 -0.29 1.08 16 28 C -0.17 -2.34 7.85 37.16 0.29 -2.05 16 29 N -0.59 -5.93 6.23 -9.43 -0.06 -5.99 16 30 H 0.43 2.67 8.96 -40.82 -0.37 2.31 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.19 2.42 2.23 -52.78 -0.12 2.30 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.37 8.48 6.34 -40.82 -0.26 8.22 16 41 H 0.26 7.25 6.77 -40.82 -0.28 6.97 16 42 H 0.06 0.87 7.77 -51.93 -0.40 0.47 16 43 H 0.06 0.84 4.88 -51.93 -0.25 0.59 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -35.71 355.23 -9.69 -45.40 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.37 Total: 10.36 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -4.39 Total: 3.08 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -0.29 Total: -73.19 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.71 -9.69 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986585604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.415 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds