Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30283 * 124.96928 * 2 1 4 4 C 1.34652 * 109.67130 * 180.02562 * 3 2 1 5 5 C 1.40836 * 107.25899 * 0.02562 * 4 3 2 6 6 N 1.32109 * 120.46351 * 179.97438 * 5 4 3 7 7 C 1.31733 * 121.94645 * 359.97438 * 6 5 4 8 8 C 1.38330 * 121.54906 * 359.72011 * 7 6 5 9 9 C 1.39635 * 119.37448 * 0.56262 * 8 7 6 10 10 C 1.47763 * 121.07357 * 179.72797 * 9 8 7 11 11 O 1.21562 * 120.00105 * 177.53922 * 10 9 8 12 12 N 1.34777 * 120.00329 * 357.54271 * 10 9 8 13 13 C 1.47422 * 125.65038 * 174.52916 * 12 10 9 14 14 C 1.54917 * 104.83121 * 204.08858 * 13 12 10 15 15 C 1.55150 * 101.58053 * 322.99223 * 14 13 12 16 16 H 1.08999 * 110.72153 * 276.95692 * 15 14 13 17 17 N 1.46504 * 110.72025 * 153.86206 * 15 14 13 18 18 C 1.36944 * 119.99795 * 86.44995 * 17 15 14 19 19 H 1.07999 * 119.99956 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00035 * 180.02562 * 18 17 15 21 21 N 1.31628 * 119.99975 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00328 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47503 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47075 * 59.99539 * 22 20 18 25 25 H 1.48499 * 109.46851 * 299.99901 * 22 20 18 26 26 C 1.47027 * 125.64641 * 354.48440 * 12 10 9 27 27 H 1.09001 * 109.87851 * 59.56089 * 26 12 10 28 28 C 1.52996 * 109.88145 * 298.39771 * 26 12 10 29 29 N 1.35988 * 124.97510 * 180.02562 * 2 1 3 30 30 H 0.96996 * 126.35380 * 0.02562 * 29 2 1 31 31 H 1.09005 * 109.47055 * 269.97479 * 1 2 3 32 32 H 1.08997 * 109.47084 * 29.97149 * 1 2 3 33 33 H 1.08998 * 109.46948 * 149.98043 * 1 2 3 34 34 H 1.08008 * 119.22000 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.31423 * 180.29327 * 8 7 6 36 36 H 1.09005 * 110.36853 * 85.25538 * 13 12 10 37 37 H 1.08994 * 110.46093 * 322.97910 * 13 12 10 38 38 H 1.08996 * 111.00443 * 204.91765 * 14 13 12 39 39 H 1.08996 * 110.99818 * 81.06784 * 14 13 12 40 40 H 0.96997 * 120.00485 * 266.45734 * 17 15 14 41 41 H 0.97001 * 119.99464 * 359.97438 * 21 20 18 42 42 H 1.08997 * 109.47609 * 285.77218 * 28 26 12 43 43 H 1.09002 * 109.47189 * 45.77735 * 28 26 12 44 44 H 1.09005 * 109.46964 * 165.77110 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7124 -0.0006 5 6 3.6007 -0.6952 -0.0015 6 7 4.7617 -1.3256 -0.0028 7 6 5.9076 -0.6759 -0.0036 8 6 5.9559 0.7066 -0.0091 9 6 4.7637 1.4335 -0.0018 10 6 4.7715 2.9111 -0.0012 11 8 3.7226 3.5245 -0.0400 12 7 5.9413 3.5789 0.0423 13 6 6.1009 5.0405 -0.0658 14 6 7.5495 5.2446 -0.5756 15 6 8.3050 4.1144 0.1720 16 1 8.5693 4.4293 1.1814 17 7 9.5002 3.7094 -0.5723 18 6 10.6801 4.3803 -0.3902 19 1 10.7296 5.2076 0.3023 20 6 11.8124 3.9970 -1.0957 21 7 11.7521 2.9884 -1.9393 22 14 13.4220 4.9116 -0.8469 23 1 14.4709 4.3114 -1.7099 24 1 13.8343 4.8098 0.5761 25 1 13.2405 6.3404 -1.2086 26 6 7.2697 2.9705 0.2063 27 1 7.4610 2.2727 -0.6089 28 6 7.3454 2.2403 1.5486 29 7 2.2865 -1.1143 -0.0005 30 1 1.9760 -2.0332 -0.0013 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 6.8312 -1.2359 -0.0051 35 1 6.9067 1.2188 -0.0144 36 1 5.9727 5.5093 0.9099 37 1 5.3863 5.4501 -0.7795 38 1 7.9301 6.2249 -0.2890 39 1 7.6069 5.1053 -1.6551 40 1 9.4558 2.9663 -1.1940 41 1 10.9165 2.5128 -2.0677 42 1 7.4258 2.9693 2.3549 43 1 6.4449 1.6421 1.6881 44 1 8.2194 1.5889 1.5592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986585604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = 84.399120 kcal Electronic energy + Delta-G solvation = -28306.738933 eV Core-core repulsion = 24454.005300 eV Total energy + Delta-G solvation = -3852.733632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.62698 -41.73016 -39.41575 -39.00817 -36.27925 -35.11415 -33.74632 -33.19349 -32.48668 -31.49794 -30.61544 -29.08008 -26.80531 -25.63142 -24.96817 -24.33781 -23.33196 -22.29115 -21.87690 -20.90760 -19.74236 -19.18925 -18.60702 -18.00581 -17.36053 -17.17200 -17.02787 -16.37857 -16.09402 -15.88860 -15.72411 -15.35731 -14.78717 -14.55860 -14.55227 -14.40975 -14.18328 -14.01730 -13.59307 -13.43878 -13.17386 -13.03052 -12.84578 -12.71533 -12.69207 -12.37576 -12.29874 -12.11998 -11.97050 -11.84774 -11.64016 -11.40677 -11.18468 -10.87277 -10.32065 -10.02510 -9.81049 -9.52874 -9.08883 -8.30776 -5.27427 -0.81402 -0.01394 1.39380 1.50825 1.64967 1.70613 1.73441 1.76966 1.89374 2.67598 2.75107 2.86278 3.09189 3.37264 3.39712 3.50892 3.57159 3.63957 3.79964 3.83371 3.95614 4.06414 4.08377 4.25344 4.31377 4.35750 4.48871 4.56431 4.65352 4.67837 4.71919 4.79980 4.82742 4.85932 4.91537 5.06372 5.08304 5.16646 5.21770 5.34107 5.40539 5.68289 6.09379 6.29105 6.57943 6.63678 6.70278 6.94143 7.12716 8.01934 8.12201 9.20945 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.002994 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.660821 B = 9349.618727 C =10255.480665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.310 3.690 3 N -0.519 5.519 4 C 0.032 3.968 5 C 0.216 3.784 6 N -0.467 5.467 7 C 0.127 3.873 8 C -0.163 4.163 9 C -0.069 4.069 10 C 0.567 3.433 11 O -0.552 6.552 12 N -0.601 5.601 13 C 0.112 3.888 14 C -0.146 4.146 15 C 0.180 3.820 16 H 0.073 0.927 17 N -0.735 5.735 18 C -0.325 4.325 19 H 0.070 0.930 20 C -0.098 4.098 21 N -0.976 5.976 22 Si 1.122 2.878 23 H -0.298 1.298 24 H -0.277 1.277 25 H -0.282 1.282 26 C 0.113 3.887 27 H 0.091 0.909 28 C -0.167 4.167 29 N -0.570 5.570 30 H 0.446 0.554 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.210 0.790 35 H 0.193 0.807 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.363 0.637 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 -9.258 6.657 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.043 3.957 3 N -0.241 5.241 4 C -0.092 4.092 5 C -0.022 4.022 6 N -0.181 5.181 7 C -0.039 4.039 8 C -0.185 4.185 9 C -0.082 4.082 10 C 0.357 3.643 11 O -0.430 6.430 12 N -0.335 5.335 13 C -0.010 4.010 14 C -0.186 4.186 15 C 0.070 3.930 16 H 0.091 0.909 17 N -0.376 5.376 18 C -0.456 4.456 19 H 0.088 0.912 20 C -0.290 4.290 21 N -0.624 5.624 22 Si 0.948 3.052 23 H -0.224 1.224 24 H -0.203 1.203 25 H -0.208 1.208 26 C 0.009 3.991 27 H 0.108 0.892 28 C -0.225 4.225 29 N -0.187 5.187 30 H 0.289 0.711 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.226 0.774 35 H 0.209 0.791 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.196 0.804 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.900 -8.733 6.348 21.766 hybrid contribution -1.334 -0.455 -0.048 1.410 sum -20.234 -9.188 6.300 23.098 Atomic orbital electron populations 1.20722 0.79559 1.06657 1.06291 1.24903 0.97722 0.79380 0.93712 1.70304 1.00911 1.29254 1.23593 1.19524 0.92599 0.92273 1.04815 1.19100 0.87488 0.90272 1.05325 1.66316 0.96272 1.41566 1.13919 1.23196 0.95063 0.91157 0.94466 1.24012 0.99965 0.96772 0.97720 1.19561 0.91997 0.92565 1.04097 1.17911 0.82368 0.87042 0.76976 1.90781 1.31557 1.69738 1.50936 1.48441 1.05468 1.08672 1.70881 1.22280 0.97286 0.79659 1.01743 1.23404 0.93289 1.01485 1.00468 1.21356 0.84943 0.91288 0.95407 0.90907 1.42429 1.06477 1.38743 1.49993 1.20280 0.89590 1.12966 1.22757 0.91183 1.26970 1.04834 1.00263 0.96959 1.70998 1.28231 1.23682 1.39439 0.82677 0.72173 0.74262 0.76078 1.22446 1.20324 1.20792 1.22290 0.81758 0.96041 0.99011 0.89182 1.22578 1.03386 1.01227 0.95286 1.42712 1.02153 1.11429 1.62434 0.71059 0.86965 0.88353 0.86279 0.77354 0.79064 0.90045 0.91081 0.89513 0.92423 0.80411 0.94217 0.91445 0.91276 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.31 6.28 8.08 137.89 1.11 7.40 16 3 N -0.52 -16.49 10.63 -179.45 -1.91 -18.39 16 4 C 0.03 1.03 6.85 40.01 0.27 1.31 16 5 C 0.22 5.77 8.46 133.93 1.13 6.91 16 6 N -0.47 -11.82 10.35 -192.83 -2.00 -13.82 16 7 C 0.13 2.85 11.14 84.73 0.94 3.79 16 8 C -0.16 -4.25 6.66 22.63 0.15 -4.10 16 9 C -0.07 -2.26 5.39 -19.75 -0.11 -2.37 16 10 C 0.57 20.69 7.56 86.76 0.66 21.34 16 11 O -0.55 -23.70 16.49 -3.91 -0.06 -23.76 16 12 N -0.60 -19.43 3.07 -792.20 -2.43 -21.86 16 13 C 0.11 3.44 6.89 86.86 0.60 4.04 16 14 C -0.15 -4.80 6.77 31.99 0.22 -4.58 16 15 C 0.18 6.31 3.11 46.17 0.14 6.46 16 16 H 0.07 2.55 7.60 -2.39 -0.02 2.53 16 17 N -0.73 -32.76 5.25 -317.34 -1.67 -34.43 16 18 C -0.32 -16.59 9.98 84.03 0.84 -15.75 16 19 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 20 C -0.10 -5.34 5.50 84.86 0.47 -4.87 16 21 N -0.98 -57.46 13.70 21.65 0.30 -57.16 16 22 Si 1.12 49.29 29.92 68.60 2.05 51.34 16 23 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.11 3.37 2.45 45.34 0.11 3.49 16 27 H 0.09 2.73 5.56 -2.39 -0.01 2.72 16 28 C -0.17 -4.26 7.85 71.98 0.56 -3.69 16 29 N -0.57 -10.49 6.23 -183.75 -1.14 -11.63 16 30 H 0.45 4.40 8.96 -92.71 -0.83 3.56 16 31 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.21 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.19 4.74 2.23 -3.18 -0.01 4.73 16 36 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.36 16.88 6.34 -92.71 -0.59 16.29 16 41 H 0.25 14.31 6.77 -92.71 -0.63 13.68 16 42 H 0.07 1.69 7.77 -2.39 -0.02 1.68 16 43 H 0.07 1.73 4.88 -2.39 -0.01 1.72 16 44 H 0.09 2.12 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -79.05 355.23 0.80 -78.25 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.20 Total: 31.97 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 7.85 Total: 19.49 kcal Atomic # 7 Polarization: -148.44 SS G_CDS: -8.85 Total: -157.29 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.76 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.34 kcal Total: -79.05 0.80 -78.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986585604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.650 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds