Wall clock time and date at job start Tue Mar 31 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35337 * 125.69771 * 2 1 4 4 N 1.36165 * 107.14355 * 180.02562 * 3 2 1 5 5 C 1.36217 * 133.92601 * 180.02562 * 4 3 2 6 6 C 1.35482 * 120.52375 * 179.97438 * 5 4 3 7 7 N 1.32691 * 122.11256 * 359.97438 * 6 5 4 8 8 C 1.32302 * 121.18646 * 0.02562 * 7 6 5 9 9 C 1.47802 * 120.58733 * 179.97438 * 8 7 6 10 10 O 1.21563 * 119.99882 * 186.41101 * 9 8 7 11 11 N 1.34777 * 120.00516 * 6.40621 * 9 8 7 12 12 C 1.48210 * 119.97118 * 178.00341 * 11 9 8 13 13 C 1.47145 * 110.20105 * 102.58832 * 12 11 9 14 14 C 1.53500 * 112.03065 * 58.35704 * 13 12 11 15 15 N 1.43461 * 107.89590 * 281.58659 * 14 13 12 16 16 C 1.36934 * 118.94108 * 273.56737 * 15 14 13 17 17 H 1.07993 * 120.00499 * 34.47751 * 16 15 14 18 18 C 1.38817 * 119.99813 * 214.47965 * 16 15 14 19 19 N 1.31618 * 120.00125 * 355.79538 * 18 16 15 20 20 Si 1.86802 * 120.00023 * 175.78970 * 18 16 15 21 21 H 1.48492 * 109.47300 * 90.00271 * 20 18 16 22 22 H 1.48501 * 109.47227 * 210.00498 * 20 18 16 23 23 H 1.48500 * 109.47094 * 330.00044 * 20 18 16 24 24 C 1.48856 * 122.12056 * 93.58101 * 15 14 13 25 25 C 1.43624 * 119.96469 * 358.02950 * 11 9 8 26 26 C 1.37557 * 106.99390 * 0.24639 * 4 3 2 27 27 N 1.31858 * 108.10608 * 359.59457 * 26 4 3 28 28 H 1.08996 * 109.47304 * 89.99336 * 1 2 3 29 29 H 1.08998 * 109.47160 * 210.00188 * 1 2 3 30 30 H 1.09008 * 109.46472 * 330.00108 * 1 2 3 31 31 H 1.08005 * 126.42703 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.74314 * 359.95196 * 5 4 3 33 33 H 1.07994 * 118.94745 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.32456 * 222.76277 * 12 11 9 35 35 H 1.09000 * 109.32633 * 342.40719 * 12 11 9 36 36 H 1.09001 * 109.00610 * 178.81768 * 13 12 11 37 37 H 1.09003 * 108.99984 * 297.59757 * 13 12 11 38 38 H 1.09003 * 109.83773 * 161.96715 * 14 13 12 39 39 H 1.09002 * 109.80117 * 41.18823 * 14 13 12 40 40 H 0.97004 * 120.00236 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.48544 * 200.64823 * 24 15 14 42 42 H 1.08998 * 109.48972 * 80.61014 * 24 15 14 43 43 H 1.08994 * 108.87630 * 31.43848 * 25 11 9 44 44 H 1.08995 * 108.87253 * 149.88035 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6658 -0.0006 5 6 4.7957 1.2952 -0.0004 6 6 5.9452 0.5781 -0.0006 7 7 5.9488 -0.7488 -0.0005 8 6 4.8188 -1.4369 -0.0007 9 6 4.8383 -2.9148 -0.0011 10 8 3.8002 -3.5363 -0.1188 11 7 6.0069 -3.5735 0.1289 12 6 6.0210 -5.0549 0.1728 13 6 6.4528 -5.5977 -1.1249 14 6 7.8468 -5.0943 -1.5244 15 7 7.7054 -3.7590 -2.0293 16 6 7.4071 -3.5794 -3.3536 17 1 6.7668 -4.2840 -3.8633 18 6 7.9278 -2.4916 -4.0410 19 7 8.6400 -1.5884 -3.4012 20 14 7.6180 -2.3098 -5.8742 21 1 6.3707 -1.5337 -6.0909 22 1 8.7599 -1.5967 -6.5009 23 1 7.4772 -3.6546 -6.4882 24 6 7.8727 -2.5623 -1.1600 25 6 7.2375 -2.8391 0.2252 26 6 3.5502 -0.7092 -0.0066 27 7 2.2862 -1.0848 -0.0006 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5139 31 1 1.9652 2.1270 -0.0004 32 1 4.8376 2.3744 -0.0005 33 1 6.8888 1.1033 -0.0001 34 1 6.7101 -5.3862 0.9497 35 1 5.0190 -5.4186 0.4005 36 1 6.4764 -6.6858 -1.0644 37 1 5.7352 -5.3015 -1.8900 38 1 8.2651 -5.7384 -2.2979 39 1 8.5021 -5.0916 -0.6533 40 1 9.0042 -0.8284 -3.8817 41 1 7.3802 -1.7061 -1.6211 42 1 8.9343 -2.3480 -1.0366 43 1 7.0425 -1.8878 0.7202 44 1 7.9427 -3.4105 0.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989435269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:15 Heat of formation + Delta-G solvation = 130.338634 kcal Electronic energy + Delta-G solvation = -29483.420920 eV Core-core repulsion = 25632.679375 eV Total energy + Delta-G solvation = -3850.741546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.96455 -39.80481 -38.23346 -36.82174 -34.52447 -34.06781 -32.47856 -31.75714 -30.77798 -29.67540 -28.09712 -27.33577 -25.68692 -24.40415 -23.62054 -23.19643 -21.99457 -20.77759 -19.65516 -19.31312 -18.25884 -17.57798 -16.49341 -16.25208 -15.94639 -15.71137 -15.42654 -15.08508 -14.44443 -14.34134 -14.08942 -13.68038 -13.51734 -13.39644 -13.13178 -13.03209 -12.79872 -12.54342 -12.34979 -12.16231 -12.05673 -11.73505 -11.37442 -11.20982 -10.85048 -10.77926 -10.51514 -10.14505 -10.06503 -10.04392 -9.84094 -9.69746 -9.58469 -9.01575 -8.74543 -8.37626 -8.15466 -7.86661 -6.45433 -5.73944 -3.23120 0.18943 1.25236 2.33790 2.78136 2.99322 3.29657 3.38478 3.44522 3.47876 3.90140 3.99763 4.17355 4.27311 4.53286 4.57245 4.99838 5.08964 5.09624 5.18890 5.42571 5.55900 5.57682 5.62730 5.66737 5.75917 5.83557 5.88417 5.93339 6.04923 6.06065 6.33005 6.42520 6.52519 6.57271 6.66032 6.76303 6.81300 6.93421 7.06362 7.18940 7.54740 7.61282 7.80444 7.87079 7.90438 8.08626 8.59671 8.67516 9.32746 9.96976 10.46317 11.32429 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004999 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.999065 B = 5599.392987 C = 6468.128353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.053 3.947 3 C -0.089 4.089 4 N -0.353 5.353 5 C 0.020 3.980 6 C 0.036 3.964 7 N -0.398 5.398 8 C 0.187 3.813 9 C 0.572 3.428 10 O -0.518 6.518 11 N -0.558 5.558 12 C 0.130 3.870 13 C -0.171 4.171 14 C 0.163 3.837 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.059 0.941 18 C 0.012 3.988 19 N -0.904 5.904 20 Si 0.895 3.105 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.174 3.826 25 C 0.058 3.942 26 C 0.200 3.800 27 N -0.436 5.436 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.251 0.749 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.111 0.889 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 7.146 11.206 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.223 4.223 4 N -0.027 5.027 5 C -0.105 4.105 6 C -0.104 4.104 7 N -0.113 5.113 8 C 0.022 3.978 9 C 0.356 3.644 10 O -0.393 6.393 11 N -0.289 5.289 12 C 0.009 3.991 13 C -0.212 4.212 14 C 0.034 3.966 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.549 5.549 20 Si 0.725 3.275 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.049 3.951 25 C -0.068 4.068 26 C -0.048 4.048 27 N -0.156 5.156 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.203 0.797 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.128 0.872 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.203 5.947 11.103 14.509 hybrid contribution -0.372 1.776 -1.307 2.236 sum -7.576 7.723 9.796 14.594 Atomic orbital electron populations 1.20139 0.86568 1.03168 1.02918 1.21237 0.97224 0.87797 1.01875 1.22402 0.80484 1.01214 1.18173 1.42776 1.06245 1.08997 1.44642 1.22684 0.83168 1.00531 1.04151 1.22369 0.97656 0.90037 1.00358 1.68792 1.25683 1.07786 1.09085 1.22331 0.83733 0.95211 0.96512 1.17175 0.84370 0.84145 0.78716 1.90821 1.32080 1.66820 1.49581 1.47264 1.06102 1.06727 1.68787 1.20643 1.01919 0.78416 0.98141 1.21825 1.02833 0.98752 0.97757 1.20247 0.92059 0.87781 0.96489 1.43715 1.81939 0.99496 1.06490 1.19119 1.23249 1.09923 0.85879 0.92312 1.25235 0.97402 0.98528 0.97444 1.69972 1.38197 1.12475 1.34220 0.86401 0.77015 0.77822 0.86235 1.21760 1.21567 1.20375 1.21907 0.96969 0.90555 0.85663 1.23000 0.84450 0.97317 1.01989 1.22467 0.94588 0.80240 1.07493 1.70558 0.97830 1.28439 1.18800 0.90618 0.90420 0.90878 0.79668 0.81081 0.79772 0.91737 0.90317 0.92583 0.91363 0.93708 0.94868 0.93864 0.89389 0.94741 0.87156 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.01 0.38 -0.33 16 2 C 0.05 0.76 7.07 -82.87 -0.59 0.18 16 3 C -0.09 -1.11 11.70 -16.66 -0.19 -1.31 16 4 N -0.35 -5.18 2.95 -61.13 -0.18 -5.36 16 5 C 0.02 0.23 11.00 -16.59 -0.18 0.05 16 6 C 0.04 0.47 11.01 -18.16 -0.20 0.27 16 7 N -0.40 -6.89 4.86 -8.68 -0.04 -6.93 16 8 C 0.19 3.65 6.81 -80.53 -0.55 3.10 16 9 C 0.57 12.23 7.66 -12.35 -0.09 12.13 16 10 O -0.52 -12.28 15.70 5.31 0.08 -12.20 16 11 N -0.56 -10.97 2.45 -177.78 -0.44 -11.41 16 12 C 0.13 2.29 5.70 -5.91 -0.03 2.26 16 13 C -0.17 -3.22 5.61 -29.28 -0.16 -3.39 16 14 C 0.16 3.41 5.63 -5.39 -0.03 3.38 16 15 N -0.59 -14.77 2.53 -172.18 -0.44 -15.21 16 16 C -0.25 -7.00 9.18 -15.06 -0.14 -7.14 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C 0.01 0.34 5.30 -17.43 -0.09 0.25 16 19 N -0.90 -25.46 10.61 55.49 0.59 -24.87 16 20 Si 0.90 22.21 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.17 4.04 4.91 -1.74 -0.01 4.03 16 25 C 0.06 1.09 4.79 -4.57 -0.02 1.06 16 26 C 0.20 3.75 7.66 -153.99 -1.18 2.57 16 27 N -0.44 -8.35 10.76 -7.53 -0.08 -8.43 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.08 1.40 7.14 -51.93 -0.37 1.03 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 38 H 0.04 0.95 8.02 -51.93 -0.42 0.54 16 39 H 0.03 0.64 7.59 -51.93 -0.39 0.24 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.09 2.26 5.49 -51.93 -0.29 1.98 16 42 H 0.03 0.85 7.95 -51.93 -0.41 0.44 16 43 H 0.11 1.95 4.78 -61.81 -0.30 1.66 16 44 H 0.05 0.82 7.73 -51.93 -0.40 0.42 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -35.48 352.74 -9.22 -44.70 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.91 Total: 0.09 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: -3.10 Total: 17.12 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -0.59 Total: -72.21 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.48 -9.22 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989435269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.037 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds