Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35337 * 125.69771 * 2 1 4 4 N 1.36165 * 107.14355 * 180.02562 * 3 2 1 5 5 C 1.36217 * 133.92601 * 180.02562 * 4 3 2 6 6 C 1.35482 * 120.52375 * 179.97438 * 5 4 3 7 7 N 1.32691 * 122.11256 * 359.97438 * 6 5 4 8 8 C 1.32302 * 121.18646 * 0.02562 * 7 6 5 9 9 C 1.47802 * 120.58733 * 179.97438 * 8 7 6 10 10 O 1.21563 * 119.99882 * 186.41101 * 9 8 7 11 11 N 1.34777 * 120.00516 * 6.40621 * 9 8 7 12 12 C 1.48210 * 119.97118 * 178.00341 * 11 9 8 13 13 C 1.47145 * 110.20105 * 102.58832 * 12 11 9 14 14 C 1.53500 * 112.03065 * 58.35704 * 13 12 11 15 15 N 1.43461 * 107.89590 * 281.58659 * 14 13 12 16 16 C 1.36934 * 118.94108 * 273.56737 * 15 14 13 17 17 H 1.07993 * 120.00499 * 34.47751 * 16 15 14 18 18 C 1.38817 * 119.99813 * 214.47965 * 16 15 14 19 19 N 1.31618 * 120.00125 * 355.79538 * 18 16 15 20 20 Si 1.86802 * 120.00023 * 175.78970 * 18 16 15 21 21 H 1.48492 * 109.47300 * 90.00271 * 20 18 16 22 22 H 1.48501 * 109.47227 * 210.00498 * 20 18 16 23 23 H 1.48500 * 109.47094 * 330.00044 * 20 18 16 24 24 C 1.48856 * 122.12056 * 93.58101 * 15 14 13 25 25 C 1.43624 * 119.96469 * 358.02950 * 11 9 8 26 26 C 1.37557 * 106.99390 * 0.24639 * 4 3 2 27 27 N 1.31858 * 108.10608 * 359.59457 * 26 4 3 28 28 H 1.08996 * 109.47304 * 89.99336 * 1 2 3 29 29 H 1.08998 * 109.47160 * 210.00188 * 1 2 3 30 30 H 1.09008 * 109.46472 * 330.00108 * 1 2 3 31 31 H 1.08005 * 126.42703 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.74314 * 359.95196 * 5 4 3 33 33 H 1.07994 * 118.94745 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.32456 * 222.76277 * 12 11 9 35 35 H 1.09000 * 109.32633 * 342.40719 * 12 11 9 36 36 H 1.09001 * 109.00610 * 178.81768 * 13 12 11 37 37 H 1.09003 * 108.99984 * 297.59757 * 13 12 11 38 38 H 1.09003 * 109.83773 * 161.96715 * 14 13 12 39 39 H 1.09002 * 109.80117 * 41.18823 * 14 13 12 40 40 H 0.97004 * 120.00236 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.48544 * 200.64823 * 24 15 14 42 42 H 1.08998 * 109.48972 * 80.61014 * 24 15 14 43 43 H 1.08994 * 108.87630 * 31.43848 * 25 11 9 44 44 H 1.08995 * 108.87253 * 149.88035 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6658 -0.0006 5 6 4.7957 1.2952 -0.0004 6 6 5.9452 0.5781 -0.0006 7 7 5.9488 -0.7488 -0.0005 8 6 4.8188 -1.4369 -0.0007 9 6 4.8383 -2.9148 -0.0011 10 8 3.8002 -3.5363 -0.1188 11 7 6.0069 -3.5735 0.1289 12 6 6.0210 -5.0549 0.1728 13 6 6.4528 -5.5977 -1.1249 14 6 7.8468 -5.0943 -1.5244 15 7 7.7054 -3.7590 -2.0293 16 6 7.4071 -3.5794 -3.3536 17 1 6.7668 -4.2840 -3.8633 18 6 7.9278 -2.4916 -4.0410 19 7 8.6400 -1.5884 -3.4012 20 14 7.6180 -2.3098 -5.8742 21 1 6.3707 -1.5337 -6.0909 22 1 8.7599 -1.5967 -6.5009 23 1 7.4772 -3.6546 -6.4882 24 6 7.8727 -2.5623 -1.1600 25 6 7.2375 -2.8391 0.2252 26 6 3.5502 -0.7092 -0.0066 27 7 2.2862 -1.0848 -0.0006 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5139 31 1 1.9652 2.1270 -0.0004 32 1 4.8376 2.3744 -0.0005 33 1 6.8888 1.1033 -0.0001 34 1 6.7101 -5.3862 0.9497 35 1 5.0190 -5.4186 0.4005 36 1 6.4764 -6.6858 -1.0644 37 1 5.7352 -5.3015 -1.8900 38 1 8.2651 -5.7384 -2.2979 39 1 8.5021 -5.0916 -0.6533 40 1 9.0042 -0.8284 -3.8817 41 1 7.3802 -1.7061 -1.6211 42 1 8.9343 -2.3480 -1.0366 43 1 7.0425 -1.8878 0.7202 44 1 7.9427 -3.4105 0.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989435269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = 107.988669 kcal Electronic energy + Delta-G solvation = -29484.390087 eV Core-core repulsion = 25632.679375 eV Total energy + Delta-G solvation = -3851.710713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.07519 -41.28563 -39.43485 -38.52781 -35.96405 -35.61696 -34.10243 -32.83034 -32.63649 -30.83476 -29.39619 -28.78642 -27.30389 -25.74427 -25.42882 -24.39569 -23.43943 -21.88293 -21.45308 -20.63891 -19.40317 -19.06827 -18.31877 -17.55051 -17.40129 -17.04404 -16.79606 -16.50333 -16.06802 -15.79211 -15.48521 -15.31595 -14.83184 -14.64307 -14.44455 -14.36158 -14.03718 -13.93524 -13.77917 -13.49243 -13.30381 -13.17207 -13.09423 -12.83855 -12.51520 -12.43572 -12.39721 -12.03601 -11.70432 -11.57834 -11.40657 -11.32354 -11.16443 -10.51044 -10.32114 -9.85373 -9.47652 -9.19352 -8.44558 -7.82910 -5.34816 -0.98945 0.14299 1.27317 1.38163 1.39864 1.48522 1.58394 1.76361 1.98682 2.48440 2.58107 2.82569 2.99601 3.21432 3.30100 3.64039 3.85660 3.96151 4.08667 4.13511 4.20224 4.24986 4.32782 4.38424 4.57975 4.69277 4.76054 4.81314 4.82756 4.86497 4.95281 4.98054 5.04195 5.08590 5.27001 5.34236 5.46352 5.52222 5.53776 5.65787 5.77846 5.89207 5.97271 6.37919 6.50863 6.54037 6.78604 7.14273 7.25558 8.02211 8.42253 9.19381 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004999 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.999065 B = 5599.392987 C = 6468.128353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.029 3.971 3 C -0.067 4.067 4 N -0.356 5.356 5 C 0.057 3.943 6 C 0.007 3.993 7 N -0.403 5.403 8 C 0.135 3.865 9 C 0.563 3.437 10 O -0.560 6.560 11 N -0.561 5.561 12 C 0.125 3.875 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.611 5.611 16 C -0.266 4.266 17 H 0.041 0.959 18 C -0.030 4.030 19 N -0.918 5.918 20 Si 0.948 3.052 21 H -0.297 1.297 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.185 3.815 25 C 0.070 3.930 26 C 0.166 3.834 27 N -0.492 5.492 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.242 0.758 32 H 0.233 0.767 33 H 0.219 0.781 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.022 0.978 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.126 0.874 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 9.848 12.250 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.200 4.200 4 N -0.030 5.030 5 C -0.068 4.068 6 C -0.134 4.134 7 N -0.118 5.118 8 C -0.028 4.028 9 C 0.349 3.651 10 O -0.438 6.438 11 N -0.291 5.291 12 C 0.005 3.995 13 C -0.196 4.196 14 C 0.032 3.968 15 N -0.334 5.334 16 C -0.397 4.397 17 H 0.058 0.942 18 C -0.227 4.227 19 N -0.563 5.563 20 Si 0.777 3.223 21 H -0.224 1.224 22 H -0.208 1.208 23 H -0.202 1.202 24 C 0.060 3.940 25 C -0.055 4.055 26 C -0.081 4.081 27 N -0.214 5.214 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.258 0.742 32 H 0.250 0.750 33 H 0.235 0.765 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.143 0.857 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.296 8.610 12.165 16.594 hybrid contribution -0.416 1.087 -1.625 1.998 sum -7.712 9.697 10.541 16.267 Atomic orbital electron populations 1.20280 0.84009 1.04473 1.03683 1.22069 0.99079 0.87529 1.01696 1.23283 0.78975 1.02846 1.14856 1.43134 1.07948 1.07832 1.44091 1.23619 0.81463 1.02946 0.98779 1.23014 0.99998 0.88793 1.01598 1.68536 1.25321 1.10090 1.07886 1.21879 0.85069 0.94327 1.01493 1.17656 0.84198 0.85488 0.77785 1.90760 1.33356 1.68098 1.51574 1.47401 1.05881 1.07494 1.68288 1.20810 1.02682 0.77632 0.98420 1.21638 1.00124 1.00846 0.96968 1.20393 0.93451 0.85943 0.97013 1.43942 1.82165 1.01295 1.05957 1.19204 1.23104 1.09799 0.87586 0.94150 1.25767 0.97837 0.98507 1.00548 1.70100 1.38734 1.12523 1.34924 0.85584 0.76573 0.77584 0.82538 1.22415 1.20803 1.20175 1.21636 0.95688 0.89282 0.87359 1.22807 0.84345 0.98778 0.99555 1.22369 0.94244 0.82217 1.09232 1.70483 0.98999 1.31295 1.20603 0.89999 0.91686 0.87000 0.74200 0.75030 0.76490 0.87833 0.90806 0.89203 0.95955 0.94544 0.92386 0.94068 0.92198 0.96707 0.85746 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.42 71.24 0.74 -0.50 16 2 C 0.03 0.80 7.07 41.63 0.29 1.10 16 3 C -0.07 -1.43 11.70 83.35 0.98 -0.46 16 4 N -0.36 -9.58 2.95 -347.30 -1.02 -10.60 16 5 C 0.06 1.11 11.00 83.37 0.92 2.02 16 6 C 0.01 0.16 11.01 83.93 0.92 1.08 16 7 N -0.40 -13.96 4.86 -181.37 -0.88 -14.84 16 8 C 0.14 5.47 6.81 43.69 0.30 5.77 16 9 C 0.56 25.37 7.66 86.77 0.66 26.04 16 10 O -0.56 -28.46 15.70 -3.91 -0.06 -28.52 16 11 N -0.56 -22.51 2.45 -834.66 -2.05 -24.56 16 12 C 0.13 4.40 5.70 84.23 0.48 4.88 16 13 C -0.15 -5.91 5.61 28.94 0.16 -5.75 16 14 C 0.16 6.68 5.63 87.11 0.49 7.17 16 15 N -0.61 -31.08 2.53 -698.65 -1.77 -32.85 16 16 C -0.27 -15.31 9.18 84.04 0.77 -14.54 16 17 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 18 C -0.03 -1.70 5.30 84.86 0.45 -1.25 16 19 N -0.92 -52.45 10.61 21.65 0.23 -52.22 16 20 Si 0.95 46.52 29.56 68.60 2.03 48.55 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.19 8.74 4.91 86.57 0.43 9.16 16 25 C 0.07 2.63 4.79 87.56 0.42 3.05 16 26 C 0.17 6.35 7.66 135.58 1.04 7.39 16 27 N -0.49 -19.46 10.76 -177.74 -1.91 -21.37 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.24 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.22 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.10 2.84 8.05 -2.39 -0.02 2.82 16 35 H 0.07 2.68 7.14 -2.39 -0.02 2.67 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.02 1.04 7.90 -2.39 -0.02 1.02 16 38 H 0.04 1.56 8.02 -2.39 -0.02 1.55 16 39 H 0.06 2.14 7.59 -2.39 -0.02 2.12 16 40 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 41 H 0.06 3.16 5.49 -2.38 -0.01 3.15 16 42 H 0.01 0.75 7.95 -2.39 -0.02 0.73 16 43 H 0.13 4.39 4.78 -21.89 -0.10 4.28 16 44 H 0.07 2.35 7.73 -2.39 -0.02 2.33 16 Total: -1.00 -85.21 352.74 4.55 -80.66 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.93 Total: 10.59 kcal Atomic # 6 Polarization: 36.11 SS G_CDS: 9.05 Total: 45.16 kcal Atomic # 7 Polarization: -149.04 SS G_CDS: -7.40 Total: -156.44 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.06 Total: -28.52 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -85.21 4.55 -80.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989435269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.649 kcal (2) G-P(sol) polarization free energy of solvation -85.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds