Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39964 * 119.94974 * 2 1 4 4 C 1.35752 * 119.35924 * 180.02562 * 3 2 1 5 5 N 1.36310 * 119.15436 * 0.02562 * 4 3 2 6 6 N 1.39908 * 132.15845 * 180.02562 * 5 4 3 7 7 C 1.30705 * 109.51779 * 179.71407 * 6 5 4 8 8 C 1.40642 * 108.72591 * 0.41103 * 7 6 5 9 9 C 1.46577 * 126.54070 * 179.85067 * 8 7 6 10 10 O 1.21714 * 120.00251 * 199.07818 * 9 8 7 11 11 N 1.34777 * 120.00023 * 19.08273 * 9 8 7 12 12 C 1.48210 * 119.97452 * 174.10269 * 11 9 8 13 13 C 1.47140 * 110.34643 * 102.46414 * 12 11 9 14 14 C 1.53801 * 111.83637 * 58.29889 * 13 12 11 15 15 N 1.43467 * 107.95751 * 281.66559 * 14 13 12 16 16 C 1.36942 * 118.93767 * 273.61105 * 15 14 13 17 17 H 1.08001 * 120.00209 * 21.79601 * 16 15 14 18 18 C 1.38812 * 119.99356 * 201.78967 * 16 15 14 19 19 N 1.31622 * 120.00196 * 36.87662 * 18 16 15 20 20 Si 1.86800 * 119.99791 * 216.86730 * 18 16 15 21 21 H 1.48507 * 109.46995 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46886 * 60.00599 * 20 18 16 23 23 H 1.48498 * 109.47506 * 300.00492 * 20 18 16 24 24 C 1.48857 * 122.11936 * 93.89359 * 15 14 13 25 25 C 1.43622 * 119.96625 * 354.07688 * 11 9 8 26 26 C 1.36597 * 119.73175 * 359.97438 * 5 4 3 27 27 N 1.31504 * 119.94784 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47042 * 90.00045 * 1 2 3 29 29 H 1.08998 * 109.46620 * 209.99684 * 1 2 3 30 30 H 1.08993 * 109.47023 * 329.99543 * 1 2 3 31 31 H 1.08005 * 120.31856 * 0.02823 * 3 2 1 32 32 H 1.07997 * 120.42059 * 180.02562 * 4 3 2 33 33 H 1.07996 * 125.63777 * 180.26724 * 7 6 5 34 34 H 1.09001 * 109.32397 * 342.19726 * 12 11 9 35 35 H 1.08997 * 109.18449 * 222.64355 * 12 11 9 36 36 H 1.08999 * 109.00358 * 297.69497 * 13 12 11 37 37 H 1.09000 * 109.00954 * 178.90636 * 13 12 11 38 38 H 1.09001 * 109.75982 * 162.05432 * 14 13 12 39 39 H 1.08998 * 109.80602 * 41.31059 * 14 13 12 40 40 H 0.97005 * 119.99745 * 5.95953 * 19 18 16 41 41 H 1.09002 * 109.47661 * 80.33968 * 24 15 14 42 42 H 1.08994 * 109.47890 * 200.37648 * 24 15 14 43 43 H 1.08997 * 108.87807 * 31.46568 * 25 11 9 44 44 H 1.08994 * 108.87521 * 150.00998 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2127 0.0000 4 6 3.5632 1.1987 -0.0005 5 7 4.2150 0.0016 -0.0016 6 7 5.5748 -0.3273 -0.0019 7 6 5.7097 -1.6274 0.0031 8 6 4.4315 -2.2139 -0.0026 9 6 4.1295 -3.6483 -0.0028 10 8 3.0310 -4.0389 -0.3524 11 7 5.0681 -4.5346 0.3841 12 6 4.7237 -5.9707 0.5092 13 6 5.2304 -6.7213 -0.6505 14 6 6.7543 -6.5794 -0.8024 15 7 7.0225 -5.3012 -1.3962 16 6 7.0097 -5.1888 -2.7609 17 1 6.4758 -5.9136 -3.3575 18 6 7.6829 -4.1430 -3.3774 19 7 8.8313 -3.7220 -2.8912 20 14 6.9590 -3.3332 -4.8972 21 1 7.8648 -2.2514 -5.3606 22 1 5.6300 -2.7590 -4.5666 23 1 6.8071 -4.3457 -5.9728 24 6 7.3202 -4.0946 -0.5768 25 6 6.4015 -4.0867 0.6743 26 6 3.4971 -1.1606 -0.0016 27 7 2.1635 -1.1395 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6701 2.1506 0.0005 32 1 4.1196 2.1243 -0.0001 33 1 6.6477 -2.1627 0.0083 34 1 3.6404 -6.0784 0.5632 35 1 5.1715 -6.3685 1.4199 36 1 4.7473 -6.3480 -1.5535 37 1 4.9826 -7.7755 -0.5269 38 1 7.1359 -7.3721 -1.4459 39 1 7.2301 -6.6382 0.1765 40 1 9.2498 -4.1966 -2.1560 41 1 8.3644 -4.1158 -0.2648 42 1 7.1357 -3.1984 -1.1690 43 1 6.3544 -3.0726 1.0709 44 1 6.8365 -4.7406 1.4301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989505840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = 144.187207 kcal Electronic energy + Delta-G solvation = -29423.761437 eV Core-core repulsion = 25573.620411 eV Total energy + Delta-G solvation = -3850.141026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.45827 -39.69171 -38.20172 -36.88166 -34.38486 -34.26826 -32.97669 -32.16597 -30.91842 -29.51425 -28.50498 -27.55970 -25.46839 -24.36970 -23.64466 -23.04408 -22.20759 -21.41175 -19.74738 -19.17495 -17.96714 -17.64029 -17.11777 -16.37766 -16.20227 -15.63220 -15.40322 -14.84018 -14.65462 -14.41259 -14.00322 -13.86681 -13.59800 -13.53013 -13.13820 -12.96456 -12.87912 -12.59204 -12.43559 -12.18770 -11.94300 -11.78540 -11.41251 -11.29678 -11.04174 -10.91308 -10.65797 -10.34000 -10.25931 -10.19575 -9.96791 -9.83427 -9.49822 -9.48241 -9.22083 -8.17619 -8.09033 -7.81476 -6.90646 -6.12448 -3.10195 0.35383 0.72877 1.96304 2.33004 3.12409 3.49304 3.52984 3.61019 3.65849 3.76153 3.88411 4.06534 4.16774 4.61029 4.64445 4.93320 5.01597 5.06491 5.15021 5.18277 5.28331 5.33035 5.40540 5.43767 5.58052 5.60610 5.66475 5.72178 5.90566 5.92384 5.94991 6.03933 6.24007 6.26161 6.40607 6.42969 6.54118 6.67914 6.81090 6.85276 7.05275 7.28425 7.37178 7.61479 8.04361 8.11510 8.57833 8.86804 9.14956 9.87824 10.26909 11.16371 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004974 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.151663 B = 5627.992056 C = 6560.759090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.201 3.799 3 C -0.227 4.227 4 C 0.169 3.831 5 N -0.313 5.313 6 N -0.311 5.311 7 C 0.114 3.886 8 C -0.274 4.274 9 C 0.603 3.397 10 O -0.541 6.541 11 N -0.584 5.584 12 C 0.136 3.864 13 C -0.169 4.169 14 C 0.165 3.835 15 N -0.588 5.588 16 C -0.359 4.359 17 H 0.056 0.944 18 C -0.011 4.011 19 N -0.898 5.898 20 Si 1.035 2.965 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.126 3.874 25 C 0.068 3.932 26 C 0.316 3.684 27 N -0.444 5.444 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.183 0.817 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.267 0.733 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.534 9.388 11.104 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.038 3.962 3 C -0.251 4.251 4 C 0.033 3.967 5 N -0.082 5.082 6 N -0.133 5.133 7 C -0.066 4.066 8 C -0.290 4.290 9 C 0.392 3.608 10 O -0.419 6.419 11 N -0.315 5.315 12 C 0.014 3.986 13 C -0.210 4.210 14 C 0.037 3.963 15 N -0.310 5.310 16 C -0.488 4.488 17 H 0.074 0.926 18 C -0.215 4.215 19 N -0.537 5.537 20 Si 0.865 3.135 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.219 1.219 24 C -0.001 4.001 25 C -0.059 4.059 26 C 0.085 3.915 27 N -0.156 5.156 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.200 0.800 33 H 0.244 0.756 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.426 10.540 9.831 18.392 hybrid contribution -0.044 -1.143 0.794 1.392 sum -11.470 9.397 10.625 18.242 Atomic orbital electron populations 1.20814 0.86955 1.04371 1.04174 1.22044 0.98098 0.87500 0.88545 1.21683 0.92462 1.01193 1.09721 1.22092 0.92671 0.88611 0.93315 1.47116 1.08064 1.06236 1.46737 1.77686 0.88166 1.16227 1.31194 1.25456 0.99752 0.90369 0.91052 1.19452 0.90460 0.93477 1.25592 1.16657 0.83978 0.83592 0.76531 1.90755 1.23488 1.79866 1.47746 1.47024 1.09437 1.07417 1.67642 1.20515 1.00841 0.79335 0.97879 1.21844 1.01397 0.98173 0.99617 1.20279 0.91682 0.88530 0.95801 1.43603 1.82412 1.02175 1.02819 1.19829 1.31138 1.15713 0.82100 0.92568 1.25449 0.94189 0.98980 1.02835 1.70847 1.11587 1.45096 1.26164 0.83970 0.76084 0.76997 0.76458 1.21160 1.22292 1.21864 1.22327 0.94962 0.92006 0.90774 1.22512 0.83857 1.00313 0.99174 1.20250 0.87750 0.86311 0.97225 1.68117 1.03849 1.28331 1.15344 0.89116 0.89462 0.89743 0.81471 0.80032 0.75607 0.90387 0.92185 0.90999 0.92673 0.93491 0.95011 0.92226 0.94474 0.90790 0.90205 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.19 36.01 0.37 -0.42 16 2 C 0.20 2.33 6.83 -82.09 -0.56 1.77 16 3 C -0.23 -1.94 9.72 -39.83 -0.39 -2.33 16 4 C 0.17 1.80 11.29 -16.45 -0.19 1.62 16 5 N -0.31 -5.04 3.86 -11.97 -0.05 -5.08 16 6 N -0.31 -5.54 12.58 30.76 0.39 -5.15 16 7 C 0.11 2.13 9.12 -17.12 -0.16 1.97 16 8 C -0.27 -5.59 5.89 -104.66 -0.62 -6.20 16 9 C 0.60 13.24 7.61 -12.90 -0.10 13.15 16 10 O -0.54 -13.31 16.39 5.18 0.08 -13.23 16 11 N -0.58 -11.39 2.46 -178.02 -0.44 -11.82 16 12 C 0.14 2.40 5.66 -5.91 -0.03 2.37 16 13 C -0.17 -3.22 5.64 -29.13 -0.16 -3.38 16 14 C 0.17 3.39 5.63 -5.23 -0.03 3.37 16 15 N -0.59 -14.21 2.44 -171.77 -0.42 -14.62 16 16 C -0.36 -10.05 9.05 -15.06 -0.14 -10.18 16 17 H 0.06 1.64 8.04 -52.49 -0.42 1.22 16 18 C -0.01 -0.31 4.30 -17.43 -0.07 -0.39 16 19 N -0.90 -26.12 12.63 55.49 0.70 -25.42 16 20 Si 1.03 26.36 30.04 -169.99 -5.11 21.26 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C 0.13 2.72 4.46 -1.56 -0.01 2.72 16 25 C 0.07 1.19 4.73 -4.39 -0.02 1.17 16 26 C 0.32 5.92 7.76 -155.84 -1.21 4.71 16 27 N -0.44 -7.61 10.32 -8.25 -0.09 -7.69 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.17 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.23 4.09 3.22 -52.49 -0.17 3.92 16 34 H 0.08 1.42 7.20 -51.93 -0.37 1.04 16 35 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 36 H 0.07 1.66 7.91 -51.93 -0.41 1.25 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 39 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 40 H 0.27 7.74 7.20 -40.82 -0.29 7.45 16 41 H 0.04 0.81 7.50 -51.93 -0.39 0.42 16 42 H 0.07 1.80 4.93 -51.93 -0.26 1.54 16 43 H 0.08 1.28 4.26 -51.93 -0.22 1.06 16 44 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -37.39 350.18 -8.45 -45.84 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.49 Total: 0.72 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -3.31 Total: 9.93 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: 0.10 Total: -69.80 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.11 Total: 21.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.39 -8.45 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989505840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.029 kcal (2) G-P(sol) polarization free energy of solvation -37.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds