Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30693 * 125.63876 * 2 1 4 4 N 1.39908 * 109.51848 * 180.29969 * 3 2 1 5 5 C 1.36311 * 132.16375 * 179.71027 * 4 3 2 6 6 C 1.35754 * 119.16106 * 180.02562 * 5 4 3 7 7 C 1.39969 * 119.35102 * 0.02562 * 6 5 4 8 8 N 1.31497 * 120.10426 * 359.97265 * 7 6 5 9 9 C 1.33369 * 120.85932 * 0.02917 * 8 7 6 10 10 C 1.40643 * 125.63512 * 179.82048 * 2 1 3 11 11 C 1.46589 * 126.53919 * 359.96529 * 10 2 1 12 12 O 1.21717 * 120.00373 * 269.68849 * 11 10 2 13 13 N 1.34780 * 119.99948 * 89.69077 * 11 10 2 14 14 C 1.48208 * 119.97292 * 180.02562 * 13 11 10 15 15 C 1.47131 * 110.34731 * 102.46033 * 14 13 11 16 16 C 1.53246 * 111.81373 * 58.22991 * 15 14 13 17 17 N 1.43465 * 108.25920 * 281.67344 * 16 15 14 18 18 C 1.36931 * 118.94630 * 273.78182 * 17 16 15 19 19 H 1.07998 * 119.99740 * 29.49904 * 18 17 16 20 20 C 1.38812 * 120.00392 * 209.50976 * 18 17 16 21 21 N 1.31621 * 120.00034 * 199.11398 * 20 18 17 22 22 Si 1.86800 * 119.99862 * 19.10158 * 20 18 17 23 23 H 1.48492 * 109.47567 * 269.35760 * 22 20 18 24 24 H 1.48500 * 109.47018 * 149.35044 * 22 20 18 25 25 H 1.48504 * 109.46878 * 29.35827 * 22 20 18 26 26 C 1.48868 * 122.11389 * 93.50134 * 17 16 15 27 27 C 1.43619 * 119.96861 * 359.97438 * 13 11 10 28 28 H 1.08999 * 109.47806 * 270.17938 * 1 2 3 29 29 H 1.09004 * 109.46634 * 30.17896 * 1 2 3 30 30 H 1.08997 * 109.47375 * 150.17739 * 1 2 3 31 31 H 1.08009 * 120.41952 * 359.97438 * 5 4 3 32 32 H 1.08005 * 120.32399 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.94542 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.32155 * 222.73260 * 14 13 11 35 35 H 1.09002 * 109.32214 * 342.36457 * 14 13 11 36 36 H 1.09004 * 109.01145 * 178.90167 * 15 14 13 37 37 H 1.08996 * 109.00909 * 297.76302 * 15 14 13 38 38 H 1.09001 * 109.49269 * 162.04107 * 16 15 14 39 39 H 1.08991 * 109.73616 * 41.45691 * 16 15 14 40 40 H 0.96993 * 120.00092 * 5.45561 * 21 20 18 41 41 H 1.08997 * 109.47490 * 80.88127 * 26 17 16 42 42 H 1.09007 * 109.47684 * 200.91097 * 26 17 16 43 43 H 1.08998 * 108.87816 * 149.91359 * 27 13 11 44 44 H 1.09004 * 108.87681 * 31.47277 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0621 0.0000 4 7 3.6126 0.6737 -0.0069 5 6 4.7721 1.3903 -0.0148 6 6 5.9580 0.7296 -0.0208 7 6 5.9636 -0.6701 -0.0194 8 7 4.8286 -1.3341 -0.0117 9 6 3.6600 -0.6915 -0.0058 10 6 2.3264 -1.1431 0.0036 11 6 1.8777 -2.5386 0.0087 12 8 1.6973 -3.1161 1.0648 13 7 1.6648 -3.1822 -1.1562 14 6 1.2106 -4.5930 -1.1504 15 6 -0.2300 -4.6678 -1.4398 16 6 -0.5729 -4.0331 -2.7919 17 7 -0.5890 -2.6079 -2.6283 18 6 -1.7410 -2.0027 -2.2024 19 1 -2.4276 -2.5378 -1.5632 20 6 -2.0266 -0.7014 -2.5923 21 7 -2.9013 0.0117 -1.9149 22 14 -1.1694 0.0377 -4.0783 23 1 0.0756 0.7199 -3.6431 24 1 -2.0705 1.0210 -4.7313 25 1 -0.8320 -1.0405 -5.0422 26 6 0.6085 -1.7665 -2.9009 27 6 1.8773 -2.5001 -2.4021 28 1 -0.3635 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8915 -0.5111 31 1 4.7476 2.4701 -0.0170 32 1 6.8881 1.2787 -0.0275 33 1 6.9015 -1.2054 -0.0237 34 1 1.7603 -5.1520 -1.9077 35 1 1.4021 -5.0295 -0.1701 36 1 -0.5364 -5.7138 -1.4495 37 1 -0.7774 -4.1452 -0.6554 38 1 -1.5545 -4.3778 -3.1171 39 1 0.1792 -4.3110 -3.5302 40 1 -3.2872 -0.3422 -1.0984 41 1 0.6900 -1.5869 -3.9729 42 1 0.5101 -0.8145 -2.3791 43 1 2.1829 -3.2270 -3.1545 44 1 2.6776 -1.7713 -2.2731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989689937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = 124.828206 kcal Electronic energy + Delta-G solvation = -30243.443936 eV Core-core repulsion = 26392.463441 eV Total energy + Delta-G solvation = -3850.980496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.41914 -39.65794 -38.10600 -36.99175 -34.30714 -34.26965 -32.79316 -31.98122 -31.42791 -29.48954 -28.13885 -27.50806 -25.85088 -24.58849 -23.93110 -23.05958 -22.04869 -20.66024 -19.81303 -18.99582 -17.98734 -17.53574 -17.23870 -16.63096 -16.33282 -15.79890 -15.63928 -15.04342 -14.70721 -14.50580 -14.04424 -13.63131 -13.36632 -13.23137 -13.14878 -12.99997 -12.75291 -12.60198 -12.41897 -12.14837 -11.97629 -11.83361 -11.49727 -11.34126 -11.08242 -11.01266 -10.81148 -10.35331 -10.26911 -9.99443 -9.92191 -9.73248 -9.43728 -9.34382 -9.12527 -8.53250 -8.09502 -7.84615 -6.90746 -6.28784 -3.33729 0.37639 0.75253 1.97811 2.56577 3.01789 3.24060 3.38910 3.50672 3.58224 3.65807 3.71994 4.09545 4.21414 4.57872 4.68465 4.94252 4.96642 5.09825 5.14407 5.32702 5.39312 5.48664 5.52579 5.56870 5.67486 5.79635 5.85737 5.91786 5.97684 6.11129 6.17954 6.19511 6.35120 6.36734 6.42970 6.52205 6.53883 6.56066 6.76320 6.96047 7.07282 7.17872 7.48191 7.53417 7.92165 8.11587 8.48780 8.69470 9.04741 9.65296 10.17135 11.13080 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.006002 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.664715 B = 4663.741456 C = 5696.188737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.176 3.824 3 N -0.311 5.311 4 N -0.309 5.309 5 C 0.172 3.828 6 C -0.237 4.237 7 C 0.179 3.821 8 N -0.461 5.461 9 C 0.284 3.716 10 C -0.264 4.264 11 C 0.617 3.383 12 O -0.545 6.545 13 N -0.576 5.576 14 C 0.130 3.870 15 C -0.169 4.169 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.344 4.344 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.914 5.914 22 Si 1.044 2.956 23 H -0.296 1.296 24 H -0.300 1.300 25 H -0.286 1.286 26 C 0.100 3.900 27 C 0.102 3.898 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.180 0.820 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.407 -0.419 0.474 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.016 3.984 3 N -0.136 5.136 4 N -0.077 5.077 5 C 0.036 3.964 6 C -0.261 4.261 7 C -0.005 4.005 8 N -0.172 5.172 9 C 0.055 3.945 10 C -0.280 4.280 11 C 0.404 3.596 12 O -0.423 6.423 13 N -0.307 5.307 14 C 0.008 3.992 15 C -0.210 4.210 16 C 0.035 3.965 17 N -0.321 5.321 18 C -0.473 4.473 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.553 5.553 22 Si 0.876 3.124 23 H -0.224 1.224 24 H -0.228 1.228 25 H -0.213 1.213 26 C -0.026 4.026 27 C -0.025 4.025 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.197 0.803 32 H 0.184 0.816 33 H 0.197 0.803 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.009 0.926 0.052 18.032 hybrid contribution 0.244 -1.032 0.865 1.368 sum 18.252 -0.106 0.917 18.276 Atomic orbital electron populations 1.20864 0.83001 1.07883 1.03777 1.22802 0.97998 0.87717 0.89925 1.77660 0.81910 1.21319 1.32665 1.46934 1.06916 1.06972 1.46891 1.22098 0.81835 0.99552 0.92951 1.21771 0.97982 0.96300 1.10034 1.23410 0.96380 0.91585 0.89131 1.68110 0.96163 1.37519 1.15411 1.20214 0.93497 0.80822 0.99966 1.19338 0.88660 0.95351 1.24655 1.16717 0.75850 0.83669 0.83354 1.90736 1.52861 1.67578 1.31093 1.47237 1.65590 1.12592 1.05297 1.20592 0.95629 0.80749 1.02190 1.21743 0.96102 1.00266 1.02841 1.20234 0.98906 0.84696 0.92706 1.43901 1.07986 1.01406 1.78845 1.20195 0.99241 0.99483 1.28364 0.91533 1.26041 0.98024 0.93749 1.02456 1.70846 1.30026 1.37833 1.16609 0.84123 0.74906 0.75393 0.77964 1.22398 1.22784 1.21309 1.22658 0.86571 0.95583 0.97772 1.21662 0.98247 0.96726 0.85817 0.90240 0.89393 0.85746 0.80272 0.81556 0.80348 0.91926 0.90195 0.92347 0.91084 0.92952 0.94828 0.92461 0.94791 0.90821 0.91424 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.32 36.01 0.34 -1.75 16 2 C 0.18 3.59 6.64 -82.17 -0.55 3.05 16 3 N -0.31 -5.88 12.58 33.80 0.43 -5.45 16 4 N -0.31 -4.91 3.86 -11.97 -0.05 -4.95 16 5 C 0.17 1.75 11.29 -16.45 -0.19 1.56 16 6 C -0.24 -1.71 10.05 -39.82 -0.40 -2.11 16 7 C 0.18 1.66 11.28 -17.05 -0.19 1.47 16 8 N -0.46 -6.90 10.47 -12.00 -0.13 -7.02 16 9 C 0.28 4.99 7.55 -155.84 -1.18 3.81 16 10 C -0.26 -5.34 4.13 -104.65 -0.43 -5.77 16 11 C 0.62 13.18 7.14 -12.89 -0.09 13.09 16 12 O -0.55 -13.07 16.54 5.17 0.09 -12.99 16 13 N -0.58 -11.04 2.46 -178.27 -0.44 -11.48 16 14 C 0.13 2.21 5.69 -5.92 -0.03 2.18 16 15 C -0.17 -3.01 5.63 -29.42 -0.17 -3.17 16 16 C 0.16 3.13 5.59 -5.52 -0.03 3.10 16 17 N -0.60 -13.47 2.28 -172.37 -0.39 -13.86 16 18 C -0.34 -8.94 7.84 -15.06 -0.12 -9.06 16 19 H 0.07 1.90 8.06 -52.49 -0.42 1.48 16 20 C 0.00 -0.01 4.63 -17.43 -0.08 -0.09 16 21 N -0.91 -26.23 13.70 55.49 0.76 -25.47 16 22 Si 1.04 25.45 24.41 -169.99 -4.15 21.31 16 23 H -0.30 -6.94 6.73 56.52 0.38 -6.56 16 24 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.29 -6.70 6.58 56.52 0.37 -6.33 16 26 C 0.10 2.12 4.22 -1.77 -0.01 2.11 16 27 C 0.10 1.84 5.06 -4.61 -0.02 1.82 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 30 H 0.12 2.98 4.49 -51.93 -0.23 2.75 16 31 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.17 0.45 8.06 -52.48 -0.42 0.03 16 33 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 35 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 38 H 0.05 1.03 8.02 -51.93 -0.42 0.62 16 39 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 40 H 0.27 7.63 8.73 -40.82 -0.36 7.27 16 41 H 0.03 0.72 5.75 -51.93 -0.30 0.42 16 42 H 0.07 1.70 3.51 -51.93 -0.18 1.52 16 43 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 44 H 0.06 1.12 6.57 -51.93 -0.34 0.77 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -34.36 344.90 -7.46 -41.82 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.63 Total: 2.67 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -3.15 Total: 10.23 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: 0.18 Total: -68.24 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.15 Total: 21.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.36 -7.46 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989689937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.647 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds