Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30059 * 124.94549 * 2 1 4 4 C 1.35773 * 109.43565 * 179.83593 * 3 2 1 5 5 C 1.39486 * 133.74772 * 180.16548 * 4 3 2 6 6 C 1.39671 * 118.05355 * 180.28643 * 5 4 3 7 7 C 1.47691 * 120.38310 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99848 * 129.70459 * 7 6 5 9 9 N 1.34777 * 119.99761 * 309.70281 * 7 6 5 10 10 C 1.46922 * 120.63067 * 3.50620 * 9 7 6 11 11 C 1.52763 * 109.00894 * 233.58646 * 10 9 7 12 12 C 1.53041 * 109.38060 * 305.58905 * 11 10 9 13 13 N 1.46503 * 109.44645 * 181.25277 * 12 11 10 14 14 C 1.36945 * 119.99512 * 84.94169 * 13 12 11 15 15 H 1.07995 * 120.00522 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99546 * 179.97438 * 14 13 12 17 17 N 1.31627 * 120.00024 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47056 * 89.99986 * 18 16 14 20 20 H 1.48493 * 109.47310 * 209.99756 * 18 16 14 21 21 H 1.48504 * 109.47142 * 330.00012 * 18 16 14 22 22 C 1.53040 * 109.53908 * 61.24357 * 12 11 10 23 23 C 1.46924 * 120.62662 * 183.78841 * 9 7 6 24 24 C 1.39985 * 119.23673 * 359.97438 * 6 5 4 25 25 N 1.31397 * 121.15541 * 0.02562 * 24 6 5 26 26 C 1.32542 * 121.79227 * 359.96530 * 25 24 6 27 27 N 1.36166 * 124.94089 * 180.30708 * 2 1 3 28 28 H 0.97000 * 126.23817 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46687 * 269.69446 * 1 2 3 30 30 H 1.09001 * 109.47023 * 29.69267 * 1 2 3 31 31 H 1.08996 * 109.46938 * 149.69385 * 1 2 3 32 32 H 1.07997 * 120.97315 * 0.29680 * 5 4 3 33 33 H 1.09004 * 109.58781 * 353.42007 * 10 9 7 34 34 H 1.09000 * 109.58475 * 113.84570 * 10 9 7 35 35 H 1.08999 * 109.56225 * 185.55615 * 11 10 9 36 36 H 1.08994 * 109.36326 * 65.50141 * 11 10 9 37 37 H 1.09000 * 109.46212 * 301.22120 * 12 11 10 38 38 H 0.96991 * 120.00186 * 264.93964 * 13 12 11 39 39 H 0.97000 * 119.99898 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.49467 * 178.68423 * 22 12 11 41 41 H 1.08998 * 109.52736 * 58.59504 * 22 12 11 42 42 H 1.09000 * 109.58830 * 246.15400 * 23 9 7 43 43 H 1.08995 * 109.58799 * 6.44256 * 23 9 7 44 44 H 1.08000 * 119.42538 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2521 1.0661 0.0000 4 6 3.5603 0.7030 0.0037 5 6 4.7592 1.4161 0.0082 6 6 5.9538 0.6925 0.0050 7 6 7.2528 1.3952 0.0089 8 8 8.1072 1.0888 0.8177 9 7 7.4910 2.3762 -0.8841 10 6 6.4422 2.8100 -1.8170 11 6 6.9855 2.7418 -3.2431 12 6 8.2809 3.5517 -3.3324 13 7 8.7873 3.5120 -4.7065 14 6 8.3190 4.4032 -5.6348 15 1 7.5760 5.1350 -5.3541 16 6 8.7992 4.3659 -6.9367 17 7 9.7050 3.4742 -7.2787 18 14 8.1599 5.5810 -8.2032 19 1 9.0063 6.8011 -8.1899 20 1 8.2065 4.9610 -9.5517 21 1 6.7586 5.9469 -7.8748 22 6 9.3249 2.9533 -2.3868 23 6 8.8063 3.0278 -0.9472 24 6 5.9058 -0.7065 -0.0021 25 7 4.7587 -1.3473 -0.0063 26 6 3.5996 -0.7044 -0.0032 27 7 2.2869 -1.1162 -0.0060 28 1 1.9740 -2.0343 -0.0106 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8927 -0.5091 31 1 -0.3633 -0.8872 -0.5186 32 1 4.7635 2.4960 0.0143 33 1 5.5770 2.1533 -1.7253 34 1 6.1512 3.8353 -1.5885 35 1 6.2502 3.1543 -3.9339 36 1 7.1873 1.7029 -3.5036 37 1 8.0834 4.5852 -3.0479 38 1 9.4543 2.8545 -4.9587 39 1 10.0403 3.4479 -8.1886 40 1 10.2546 3.5164 -2.4682 41 1 9.5052 1.9123 -2.6551 42 1 8.7121 4.0712 -0.6463 43 1 9.4999 2.5162 -0.2799 44 1 6.8277 -1.2691 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996663035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = 66.356955 kcal Electronic energy + Delta-G solvation = -27566.995741 eV Core-core repulsion = 23713.479742 eV Total energy + Delta-G solvation = -3853.515999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75237 -40.36637 -38.42804 -37.28702 -34.64245 -34.04095 -32.40349 -31.93320 -31.62541 -30.55329 -29.25627 -28.46082 -25.37556 -23.99076 -23.59796 -22.83432 -22.42426 -21.52122 -20.49070 -19.25188 -18.89733 -17.66052 -17.14327 -16.95997 -16.36592 -16.10670 -15.86627 -14.96073 -14.83780 -14.38913 -14.01873 -13.92345 -13.83344 -13.71664 -13.49827 -13.39092 -13.34387 -13.07797 -12.81068 -12.53312 -12.25831 -11.98674 -11.64258 -11.40146 -11.38436 -10.96455 -10.88360 -10.82867 -10.49811 -10.24240 -10.11428 -9.84188 -9.69140 -9.50626 -9.13915 -8.90841 -8.79030 -8.54310 -6.99176 -5.78937 -3.08214 0.40330 0.66143 2.10032 2.33200 2.59946 2.96946 3.41735 3.44687 3.46956 3.48642 3.60188 3.98176 4.28453 4.38195 4.54130 4.56453 4.65742 4.82464 4.91617 5.00127 5.07522 5.29753 5.31202 5.32675 5.39212 5.47772 5.52133 5.61578 5.65407 5.70959 5.74083 5.92452 5.98280 6.15016 6.21020 6.35899 6.37383 6.49096 6.59082 6.68515 6.87236 7.02408 7.31063 7.38909 7.51326 7.67254 8.10081 8.39344 9.50607 10.07984 10.42588 11.43597 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.002922 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.580926 B = 9581.402120 C =11003.554351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.296 3.704 3 N -0.477 5.477 4 C -0.001 4.001 5 C 0.016 3.984 6 C -0.183 4.183 7 C 0.570 3.430 8 O -0.538 6.538 9 N -0.595 5.595 10 C 0.097 3.903 11 C -0.151 4.151 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.139 4.139 23 C 0.117 3.883 24 C 0.190 3.810 25 N -0.483 5.483 26 C 0.254 3.746 27 N -0.586 5.586 28 H 0.428 0.572 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 -8.446 17.369 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 N -0.198 5.198 4 C -0.121 4.121 5 C -0.012 4.012 6 C -0.191 4.191 7 C 0.356 3.644 8 O -0.416 6.416 9 N -0.327 5.327 10 C -0.026 4.026 11 C -0.192 4.192 12 C 0.069 3.931 13 N -0.364 5.364 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.178 4.178 23 C -0.006 4.006 24 C 0.021 3.979 25 N -0.195 5.195 26 C 0.018 3.982 27 N -0.201 5.201 28 H 0.268 0.732 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.678 -8.457 17.654 25.717 hybrid contribution -0.056 -0.030 -1.059 1.061 sum -16.734 -8.487 16.595 25.050 Atomic orbital electron populations 1.20451 0.83285 1.05263 1.04623 1.23747 0.95863 0.80273 0.97256 1.70477 1.00204 1.27424 1.21680 1.19496 0.92762 0.91619 1.08213 1.20908 0.87899 1.00670 0.91732 1.20660 0.93871 0.95759 1.08765 1.17863 0.86134 0.79363 0.81002 1.90790 1.46564 1.65708 1.38543 1.48102 1.14289 1.35944 1.34385 1.22082 0.90019 1.00108 0.90348 1.22600 1.01043 1.02158 0.93393 1.20172 0.90590 0.96313 0.86068 1.42434 1.49205 1.40189 1.04586 1.19232 1.18365 1.09458 0.90026 0.91154 1.24753 0.99441 0.99238 0.97506 1.69666 1.32706 1.37046 1.18632 0.86208 0.78280 0.80562 0.81241 1.21711 1.21819 1.20750 1.22218 0.99945 1.02177 0.93491 1.21682 0.83341 0.97393 0.98134 1.22621 0.94363 0.89873 0.91023 1.66470 0.95752 1.40352 1.16968 1.19077 0.86173 0.91245 1.01743 1.42707 1.03659 1.10650 1.63111 0.73178 0.88936 0.87981 0.89761 0.83145 0.90120 0.91025 0.90563 0.92197 0.93322 0.78248 0.93495 0.90354 0.91729 0.91235 0.89107 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.01 0.38 0.12 16 2 C 0.30 2.44 8.08 -154.74 -1.25 1.19 16 3 N -0.48 -5.59 11.29 -8.20 -0.09 -5.68 16 4 C 0.00 -0.02 7.23 -84.69 -0.61 -0.63 16 5 C 0.02 0.19 7.52 -38.58 -0.29 -0.10 16 6 C -0.18 -2.34 5.02 -104.85 -0.53 -2.87 16 7 C 0.57 8.23 7.25 -12.40 -0.09 8.14 16 8 O -0.54 -9.16 16.47 5.30 0.09 -9.07 16 9 N -0.60 -8.25 2.98 -174.20 -0.52 -8.77 16 10 C 0.10 1.29 5.36 -3.93 -0.02 1.27 16 11 C -0.15 -2.53 5.64 -26.83 -0.15 -2.68 16 12 C 0.18 3.35 2.73 -67.89 -0.19 3.17 16 13 N -0.72 -17.60 5.12 -53.38 -0.27 -17.87 16 14 C -0.24 -6.47 9.93 -15.05 -0.15 -6.62 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 18 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 23 C 0.12 1.62 6.43 -3.71 -0.02 1.59 16 24 C 0.19 2.35 10.87 -17.08 -0.19 2.16 16 25 N -0.48 -6.10 10.37 -11.96 -0.12 -6.22 16 26 C 0.25 3.04 8.45 -155.64 -1.31 1.73 16 27 N -0.59 -4.86 6.20 -9.44 -0.06 -4.92 16 28 H 0.43 2.10 8.96 -40.82 -0.37 1.74 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.15 1.61 7.11 -52.49 -0.37 1.24 16 33 H 0.08 1.01 4.55 -51.93 -0.24 0.77 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.27 7.02 -51.93 -0.36 0.91 16 44 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -34.77 363.43 -10.32 -45.09 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.85 Total: 8.46 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -4.67 Total: 3.61 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -0.34 Total: -70.64 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.77 -10.32 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996663035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.447 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds