Wall clock time and date at job start Tue Mar 31 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47436 * 269.99992 * 3 2 1 5 5 H 1.48499 * 109.47389 * 30.00313 * 3 2 1 6 6 H 1.48504 * 109.47155 * 150.00118 * 3 2 1 7 7 C 1.38812 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00513 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99527 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99740 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41956 * 275.13099 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67533 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47041 * 180.02562 * 16 14 13 18 18 N 1.39832 * 125.39103 * 90.02586 * 17 16 14 19 19 C 1.30237 * 110.09386 * 179.97438 * 18 17 16 20 20 C 1.45854 * 107.65831 * 359.97438 * 19 18 17 21 21 C 1.39994 * 134.26596 * 180.02562 * 20 19 18 22 22 C 1.37009 * 118.16127 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.64596 * 0.02562 * 22 21 20 24 24 N 1.31504 * 121.58729 * 0.02562 * 23 22 21 25 25 C 1.32764 * 121.47017 * 359.69572 * 24 23 22 26 26 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 27 27 C 1.53034 * 109.45778 * 155.00078 * 10 9 7 28 28 H 0.97006 * 119.99415 * 359.97438 * 1 2 3 29 29 H 0.96989 * 119.99951 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.45983 * 35.03272 * 10 9 7 31 31 H 1.08997 * 109.68637 * 58.70742 * 11 10 9 32 32 H 1.09002 * 109.47277 * 298.50998 * 11 10 9 33 33 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 34 34 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 35 35 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 36 36 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 37 37 H 1.07998 * 126.17168 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.91959 * 0.02562 * 21 20 19 39 39 H 1.07999 * 120.18054 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.20542 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.58580 * 173.39910 * 26 13 12 42 42 H 1.09006 * 109.57831 * 293.67403 * 26 13 12 43 43 H 1.08994 * 109.50232 * 61.43598 * 27 10 9 44 44 H 1.09007 * 109.52628 * 301.35259 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 2.4239 -4.0330 -1.4425 12 6 3.2180 -5.3431 -1.4337 13 7 2.4410 -6.3655 -0.7200 14 6 2.1725 -7.5526 -1.2992 15 8 2.5731 -7.7847 -2.4202 16 6 1.3747 -8.5913 -0.5539 17 7 1.2213 -9.7831 -1.3920 18 7 2.0994 -10.8710 -1.4214 19 6 1.6773 -11.7639 -2.2704 20 6 0.4395 -11.2648 -2.8586 21 6 -0.4602 -11.7611 -3.8095 22 6 -1.5509 -10.9960 -4.1289 23 6 -1.7320 -9.7665 -3.5105 24 7 -0.8787 -9.3113 -2.6195 25 6 0.1932 -10.0104 -2.2659 26 6 1.9624 -6.0697 0.6373 27 6 1.1809 -4.7524 0.6083 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.9689 -3.5508 0.5876 31 1 3.0302 -3.2430 -1.8857 32 1 1.5128 -4.1638 -2.0264 33 1 4.1711 -5.1892 -0.9277 34 1 3.3967 -5.6689 -2.4583 35 1 1.8955 -8.8588 0.3655 36 1 0.3914 -8.1887 -0.3107 37 1 2.1568 -12.7046 -2.4972 38 1 -0.2993 -12.7210 -4.2777 39 1 -2.2660 -11.3475 -4.8579 40 1 -2.5945 -9.1694 -3.7673 41 1 1.3105 -6.8739 0.9783 42 1 2.8131 -5.9776 1.3126 43 1 0.2814 -4.8763 0.0053 44 1 0.9020 -4.4725 1.6243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996810874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:54 Heat of formation + Delta-G solvation = 90.974541 kcal Electronic energy + Delta-G solvation = -27483.497499 eV Core-core repulsion = 23631.048998 eV Total energy + Delta-G solvation = -3852.448501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79297 -40.06149 -38.31510 -37.36534 -34.54842 -34.07204 -32.32106 -31.85988 -30.87164 -30.32731 -29.39068 -27.54716 -24.88412 -24.20578 -23.19403 -22.80833 -22.68764 -21.40039 -20.24862 -18.99452 -17.92527 -17.55173 -17.31590 -16.98264 -16.39110 -15.86101 -15.43855 -15.24136 -14.83591 -14.55744 -14.20237 -13.95959 -13.72764 -13.60600 -13.55249 -13.37274 -13.13617 -12.83455 -12.69012 -12.55140 -12.25452 -12.06355 -11.53960 -11.24045 -10.99411 -10.94703 -10.90749 -10.83128 -10.45157 -10.28308 -10.02698 -9.80491 -9.69534 -9.68351 -9.21446 -8.92796 -8.57403 -8.51862 -7.00136 -5.79827 -3.09101 0.54842 1.06623 1.79232 2.22641 2.53469 3.02065 3.41544 3.46832 3.48267 3.57164 3.92889 4.03313 4.32180 4.38725 4.54032 4.55530 4.72538 4.81227 4.87582 4.93442 5.09726 5.17513 5.28699 5.31404 5.37301 5.41074 5.53270 5.58175 5.74227 5.85323 5.85849 5.93199 5.98327 6.17540 6.22250 6.26369 6.40777 6.49985 6.52115 6.58708 6.88179 7.01716 7.20553 7.38751 7.66735 7.70768 8.10902 8.38481 9.49808 10.06654 10.41289 11.42709 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002434 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.933700 B =11499.954941 C =12122.311531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.150 4.150 12 C 0.114 3.886 13 N -0.602 5.602 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.125 3.875 17 N -0.376 5.376 18 N -0.228 5.228 19 C 0.083 3.917 20 C -0.229 4.229 21 C 0.005 3.995 22 C -0.219 4.219 23 C 0.170 3.830 24 N -0.499 5.499 25 C 0.325 3.675 26 C 0.109 3.891 27 C -0.141 4.141 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.201 0.799 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -26.570 -3.008 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.191 4.191 12 C -0.008 4.008 13 N -0.336 5.336 14 C 0.286 3.714 15 O -0.409 6.409 16 C 0.000 4.000 17 N -0.165 5.165 18 N -0.040 5.040 19 C -0.116 4.116 20 C -0.239 4.239 21 C -0.024 4.024 22 C -0.241 4.241 23 C 0.001 3.999 24 N -0.214 5.214 25 C 0.087 3.913 26 C -0.015 4.015 27 C -0.180 4.180 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.218 0.782 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.055 -25.249 -2.166 25.342 hybrid contribution -0.345 0.211 -0.995 1.074 sum -0.291 -25.037 -3.161 25.238 Atomic orbital electron populations 1.69664 1.05123 1.25695 1.57567 1.24750 0.95512 0.97723 1.02930 0.86204 0.78650 0.83870 0.77539 1.21721 1.21774 1.20754 1.19229 0.90974 0.84072 1.42834 0.91167 1.42422 1.05792 0.99691 1.88509 1.20211 0.94344 0.86011 0.92511 1.22727 1.00166 0.94717 1.01459 1.21715 0.93781 0.87693 0.97653 1.48143 1.54091 1.14501 1.16898 1.20705 0.80801 0.82943 0.86983 1.90716 1.52623 1.78644 1.18916 1.21515 1.03398 0.82078 0.93017 1.47590 1.17297 1.15811 1.35850 1.76713 1.12689 0.94637 1.19919 1.25025 0.93307 0.99033 0.94210 1.20498 1.00217 0.98146 1.05069 1.20755 0.91008 0.98746 0.91851 1.21654 1.00492 0.97198 1.04768 1.22780 0.95247 0.93022 0.88823 1.66764 1.02868 1.34682 1.17038 1.18939 0.89911 0.91161 0.91335 1.21846 0.98764 0.98306 0.82557 1.22212 0.99270 0.93996 1.02478 0.93484 0.78260 0.93342 0.90624 0.92256 0.91643 0.89835 0.85934 0.85650 0.78192 0.84309 0.84141 0.81729 0.90499 0.90711 0.91556 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.62 5.12 -53.23 -0.27 -17.89 16 10 C 0.18 3.37 2.73 -67.73 -0.19 3.19 16 11 C -0.15 -2.68 5.69 -26.45 -0.15 -2.84 16 12 C 0.11 1.76 6.42 -3.71 -0.02 1.74 16 13 N -0.60 -8.51 2.97 -172.77 -0.51 -9.02 16 14 C 0.50 7.63 7.77 -10.99 -0.09 7.55 16 15 O -0.53 -10.34 15.84 5.56 0.09 -10.25 16 16 C 0.13 1.50 5.23 -5.19 -0.03 1.48 16 17 N -0.38 -5.18 3.13 -61.60 -0.19 -5.38 16 18 N -0.23 -2.95 12.40 31.85 0.39 -2.55 16 19 C 0.08 0.83 12.29 -15.18 -0.19 0.65 16 20 C -0.23 -2.56 6.38 -105.18 -0.67 -3.23 16 21 C 0.00 0.04 10.18 -39.37 -0.40 -0.36 16 22 C -0.22 -1.67 10.04 -39.82 -0.40 -2.07 16 23 C 0.17 1.67 11.15 -17.48 -0.19 1.47 16 24 N -0.50 -6.76 10.40 -12.34 -0.13 -6.89 16 25 C 0.32 4.50 7.97 -156.11 -1.24 3.26 16 26 C 0.11 1.25 6.34 -3.71 -0.02 1.23 16 27 C -0.14 -2.09 5.55 -26.62 -0.15 -2.24 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 30 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.40 7.00 -51.93 -0.36 1.03 16 35 H 0.12 1.11 7.94 -51.93 -0.41 0.70 16 36 H 0.13 1.33 7.69 -51.93 -0.40 0.93 16 37 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -36.83 368.63 -9.35 -46.18 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.00 Total: 7.57 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -3.99 Total: 2.68 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.01 Total: -68.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.83 -9.35 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996810874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.150 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds