Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39965 * 120.32026 * 2 1 4 4 N 1.31502 * 120.10599 * 179.97438 * 3 2 1 5 5 C 1.33384 * 120.85422 * 0.02562 * 4 3 2 6 6 C 1.40798 * 132.48220 * 179.97438 * 5 4 3 7 7 C 1.46582 * 126.53824 * 359.97438 * 6 5 4 8 8 O 1.21714 * 120.00366 * 40.09570 * 7 6 5 9 9 N 1.34775 * 120.00089 * 220.09793 * 7 6 5 10 10 C 1.46922 * 120.63083 * 5.22680 * 9 7 6 11 11 C 1.53627 * 108.54401 * 126.36860 * 10 9 7 12 12 C 1.53036 * 109.24297 * 54.85556 * 11 10 9 13 13 N 1.46504 * 109.45895 * 178.49158 * 12 11 10 14 14 C 1.36943 * 119.99731 * 275.06703 * 13 12 11 15 15 H 1.07998 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47154 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47131 * 120.00181 * 18 16 14 21 21 H 1.48498 * 109.47182 * 239.99900 * 18 16 14 22 22 C 1.53036 * 109.53924 * 298.51005 * 12 11 10 23 23 C 1.46924 * 120.63172 * 185.50318 * 9 7 6 24 24 C 1.40648 * 106.92529 * 179.97438 * 6 5 4 25 25 N 1.30698 * 108.72445 * 0.02562 * 24 6 5 26 26 N 1.36600 * 120.79556 * 359.97438 * 5 4 3 27 27 C 1.35756 * 120.32366 * 179.71984 * 2 1 3 28 28 H 1.08993 * 109.47028 * 89.99968 * 1 2 3 29 29 H 1.09001 * 109.46950 * 210.00167 * 1 2 3 30 30 H 1.08999 * 109.47031 * 330.00241 * 1 2 3 31 31 H 1.07995 * 119.94638 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.58595 * 246.19963 * 10 9 7 33 33 H 1.09003 * 109.58898 * 6.62427 * 10 9 7 34 34 H 1.09000 * 109.63512 * 294.86124 * 11 10 9 35 35 H 1.09006 * 109.43026 * 174.72839 * 11 10 9 36 36 H 1.09004 * 109.45895 * 58.53321 * 12 11 10 37 37 H 0.96994 * 120.00042 * 95.07050 * 13 12 11 38 38 H 0.96994 * 120.00289 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.49817 * 301.41473 * 22 12 11 40 40 H 1.09004 * 109.52618 * 181.33003 * 22 12 11 41 41 H 1.08997 * 109.59135 * 353.37490 * 23 9 7 42 42 H 1.09005 * 109.58556 * 113.65725 * 23 9 7 43 43 H 1.07993 * 125.63549 * 179.97438 * 24 6 5 44 44 H 1.08004 * 120.41982 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2033 0.0005 5 6 4.2084 0.0557 0.0005 6 6 5.5864 -0.2333 0.0005 7 6 6.6822 0.7403 0.0000 8 8 6.6017 1.7476 0.6784 9 7 7.7789 0.5201 -0.7518 10 6 7.8435 -0.6311 -1.6624 11 6 8.2016 -0.1232 -3.0674 12 6 9.4939 0.6932 -2.9944 13 7 9.8593 1.1498 -4.3376 14 6 10.5770 0.3304 -5.1676 15 1 10.8739 -0.6522 -4.8318 16 6 10.9237 0.7632 -6.4402 17 7 10.5631 1.9612 -6.8489 18 14 11.9032 -0.3542 -7.5721 19 1 12.1823 -1.6380 -6.8801 20 1 11.1205 -0.6177 -8.8063 21 1 13.1850 0.3046 -7.9302 22 6 9.2831 1.9050 -2.0838 23 6 8.9350 1.4233 -0.6718 24 6 5.7110 -1.6342 0.0011 25 7 4.5153 -2.1618 0.0009 26 7 3.5552 -1.1441 0.0005 27 6 2.1924 -1.1718 0.0057 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6780 2.1460 0.0004 32 1 8.6073 -1.3277 -1.3170 33 1 6.8752 -1.1310 -1.6888 34 1 7.3954 0.5049 -3.4463 35 1 8.3454 -0.9732 -3.7345 36 1 10.2939 0.0716 -2.5922 37 1 9.5930 2.0324 -4.6390 38 1 10.8056 2.2638 -7.7380 39 1 8.4667 2.5140 -2.4720 40 1 10.1963 2.4992 -2.0507 41 1 8.6873 2.2794 -0.0444 42 1 9.7854 0.8914 -0.2450 43 1 6.6410 -2.1832 0.0009 44 1 1.6646 -2.1141 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997049433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = 101.508379 kcal Electronic energy + Delta-G solvation = -27667.730934 eV Core-core repulsion = 23815.739214 eV Total energy + Delta-G solvation = -3851.991719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78420 -39.81903 -38.52558 -37.11674 -34.70378 -34.40699 -33.09724 -31.95108 -30.89174 -29.89162 -29.07907 -27.41302 -25.35856 -24.92384 -23.56445 -23.09666 -22.31450 -21.89610 -20.31700 -19.28966 -18.43529 -17.48626 -17.16399 -16.96283 -16.52911 -15.79611 -15.45946 -14.87800 -14.75520 -14.44267 -14.10125 -14.05135 -13.70092 -13.65616 -13.49837 -13.35607 -13.15675 -12.93157 -12.85804 -12.71245 -12.29808 -11.83046 -11.78342 -11.50769 -11.29941 -10.92967 -10.81857 -10.77152 -10.41041 -10.17818 -10.16367 -9.79226 -9.76427 -9.66354 -9.61336 -8.89003 -8.41296 -8.14624 -6.94855 -5.75681 -3.04588 0.06728 0.41476 1.59835 1.96577 2.81309 3.07937 3.43142 3.46585 3.47268 3.48772 3.51029 3.73681 3.91506 4.20813 4.39076 4.59078 4.74518 4.79221 4.93022 4.98829 5.06226 5.18572 5.23780 5.36208 5.42178 5.44625 5.51925 5.57919 5.59509 5.70673 5.78397 5.86622 6.00649 6.06541 6.11019 6.30127 6.44701 6.49238 6.58146 6.74543 6.96744 6.99275 7.10432 7.26629 7.66535 7.70591 8.42700 8.45412 9.53801 10.12316 10.46966 11.47053 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.002665 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.114503 B =10505.135458 C =10937.054715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.190 4.190 3 C 0.188 3.812 4 N -0.443 5.443 5 C 0.307 3.693 6 C -0.275 4.275 7 C 0.600 3.400 8 O -0.539 6.539 9 N -0.603 5.603 10 C 0.103 3.897 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.725 5.725 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.932 5.932 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.139 4.139 23 C 0.119 3.881 24 C 0.128 3.872 25 N -0.311 5.311 26 N -0.305 5.305 27 C 0.160 3.840 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.183 0.817 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.207 0.793 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.496 -6.866 16.879 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.004 3.996 4 N -0.153 5.153 5 C 0.076 3.924 6 C -0.291 4.291 7 C 0.388 3.612 8 O -0.416 6.416 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.190 4.190 12 C 0.069 3.931 13 N -0.365 5.365 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.178 4.178 23 C -0.003 4.003 24 C -0.053 4.053 25 N -0.133 5.133 26 N -0.073 5.073 27 C 0.024 3.976 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.200 0.800 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.224 0.776 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.271 -6.938 17.142 27.439 hybrid contribution 0.379 -0.457 -1.038 1.196 sum -19.892 -7.395 16.104 26.641 Atomic orbital electron populations 1.20619 0.87376 1.04040 1.03469 1.20596 0.99197 0.92308 1.07518 1.23576 0.88883 0.98630 0.88462 1.68271 1.08702 1.24136 1.14189 1.20316 0.93002 0.81282 0.97812 1.19387 0.90210 0.93899 1.25639 1.16776 0.80641 0.84459 0.79334 1.90785 1.79540 1.28127 1.43142 1.47940 1.15911 1.28457 1.41274 1.22105 1.01537 0.87664 0.90700 1.22729 1.00903 1.01508 0.93877 1.20171 0.93337 0.92864 0.86718 1.42459 1.64936 1.18278 1.10818 1.19283 1.25917 0.97203 0.94413 0.91113 1.24755 1.01656 0.96896 0.97780 1.69676 1.51267 1.17989 1.19156 0.86139 0.79541 0.79707 0.80939 1.20560 1.21961 1.21896 1.22197 1.02011 0.99319 0.94226 1.21597 0.86751 0.93932 0.98022 1.24209 0.96591 0.92137 0.92357 1.77600 0.96244 1.08217 1.31196 1.46964 1.06064 1.07846 1.46398 1.21947 0.79352 1.01256 0.95008 0.90155 0.90741 0.90095 0.79967 0.91380 0.90492 0.92329 0.90804 0.93368 0.78277 0.93582 0.91838 0.90579 0.89296 0.91550 0.77639 0.80110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 10.03 36.01 0.36 0.16 16 2 C -0.19 -1.14 5.86 -104.86 -0.61 -1.75 16 3 C 0.19 1.56 10.97 -17.05 -0.19 1.37 16 4 N -0.44 -6.05 10.47 -12.00 -0.13 -6.18 16 5 C 0.31 4.42 7.88 -155.83 -1.23 3.19 16 6 C -0.27 -4.10 5.25 -104.66 -0.55 -4.65 16 7 C 0.60 10.17 7.56 -12.90 -0.10 10.08 16 8 O -0.54 -10.85 16.51 5.18 0.09 -10.76 16 9 N -0.60 -9.27 2.97 -174.08 -0.52 -9.79 16 10 C 0.10 1.43 5.48 -3.49 -0.02 1.41 16 11 C -0.15 -2.62 5.67 -26.39 -0.15 -2.77 16 12 C 0.18 3.51 2.73 -67.89 -0.19 3.33 16 13 N -0.72 -18.12 5.12 -53.38 -0.27 -18.39 16 14 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 C -0.14 -2.40 5.55 -26.61 -0.15 -2.55 16 23 C 0.12 1.82 6.44 -3.71 -0.02 1.80 16 24 C 0.13 1.52 9.55 -17.13 -0.16 1.36 16 25 N -0.31 -3.82 12.58 30.76 0.39 -3.43 16 26 N -0.30 -3.61 3.86 -11.97 -0.05 -3.65 16 27 C 0.16 1.21 10.94 -16.45 -0.18 1.03 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.07 8.08 -51.93 -0.42 -0.35 16 30 H 0.08 0.08 8.10 -51.93 -0.42 -0.34 16 31 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.98 4.75 -51.93 -0.25 0.73 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 38 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.21 1.77 7.29 -52.49 -0.38 1.39 16 44 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -37.33 365.12 -8.64 -45.96 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.92 Total: 6.20 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -3.43 Total: 4.83 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: 0.15 Total: -69.05 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.33 -8.64 -45.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997049433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.473 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds