Wall clock time and date at job start Tue Mar 31 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35336 * 125.69545 * 2 1 4 4 N 1.36161 * 107.14568 * 179.97438 * 3 2 1 5 5 C 1.36223 * 133.93033 * 180.02562 * 4 3 2 6 6 C 1.35482 * 120.52274 * 179.97438 * 5 4 3 7 7 N 1.32688 * 122.11579 * 359.97438 * 6 5 4 8 8 C 1.32297 * 121.18743 * 0.02562 * 7 6 5 9 9 C 1.47803 * 120.58821 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99441 * 187.53923 * 9 8 7 11 11 N 1.34769 * 120.00174 * 7.53483 * 9 8 7 12 12 C 1.46929 * 120.63085 * 189.46795 * 11 9 8 13 13 C 1.52763 * 109.00826 * 233.58346 * 12 11 9 14 14 C 1.53037 * 109.38396 * 305.59230 * 13 12 11 15 15 N 1.46501 * 109.45234 * 181.25580 * 14 13 12 16 16 C 1.36932 * 120.00328 * 84.93176 * 15 14 13 17 17 H 1.08002 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00198 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47198 * 89.99609 * 20 18 16 22 22 H 1.48505 * 109.47103 * 209.99571 * 20 18 16 23 23 H 1.48499 * 109.46931 * 329.99707 * 20 18 16 24 24 C 1.53042 * 109.54452 * 61.23556 * 14 13 12 25 25 C 1.46931 * 120.63163 * 9.74900 * 11 9 8 26 26 C 1.37565 * 106.99442 * 359.97438 * 4 3 2 27 27 N 1.31850 * 108.10481 * 0.02562 * 26 4 3 28 28 H 1.08999 * 109.46992 * 270.01616 * 1 2 3 29 29 H 1.08996 * 109.47208 * 30.01375 * 1 2 3 30 30 H 1.08994 * 109.47563 * 150.01703 * 1 2 3 31 31 H 1.08002 * 126.42717 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.73868 * 359.97351 * 5 4 3 33 33 H 1.08008 * 118.93721 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.58597 * 353.41935 * 12 11 9 35 35 H 1.08999 * 109.58564 * 113.84587 * 12 11 9 36 36 H 1.08992 * 109.56562 * 185.55222 * 13 12 11 37 37 H 1.09003 * 109.35808 * 65.49418 * 13 12 11 38 38 H 1.09001 * 109.45864 * 301.21366 * 14 13 12 39 39 H 0.97005 * 119.99778 * 264.93942 * 15 14 13 40 40 H 0.96996 * 120.00116 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.50190 * 178.68548 * 24 14 13 42 42 H 1.09004 * 109.49440 * 58.58682 * 24 14 13 43 43 H 1.09004 * 109.58450 * 246.15398 * 25 11 9 44 44 H 1.08997 * 109.58310 * 6.43537 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2966 1.0991 0.0000 4 7 3.5875 0.6659 0.0006 5 6 4.7956 1.2954 0.0013 6 6 5.9451 0.5783 0.0023 7 7 5.9487 -0.7486 0.0031 8 6 4.8188 -1.4368 0.0025 9 6 4.8384 -2.9147 0.0040 10 8 3.8029 -3.5363 -0.1348 11 7 6.0041 -3.5731 0.1590 12 6 6.0753 -5.0268 -0.0424 13 6 6.6925 -5.6712 1.1975 14 6 8.0404 -5.0107 1.4956 15 7 8.6476 -5.6479 2.6668 16 6 9.3871 -6.7907 2.5182 17 1 9.5226 -7.2226 1.5376 18 6 9.9619 -7.3947 3.6280 19 7 9.7965 -6.8686 4.8231 20 14 10.9715 -8.9533 3.4252 21 1 12.3938 -8.5951 3.1930 22 1 10.8631 -9.7769 4.6562 23 1 10.4601 -9.7268 2.2653 24 6 7.8296 -3.5213 1.7775 25 6 7.2265 -2.8517 0.5387 26 6 3.5501 -0.7092 0.0015 27 7 2.2863 -1.0848 0.0009 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5140 30 1 -0.3634 -0.8901 -0.5135 31 1 1.9650 2.1270 0.0004 32 1 4.8374 2.3745 0.0011 33 1 6.8887 1.1036 0.0024 34 1 5.0722 -5.4237 -0.1979 35 1 6.6958 -5.2452 -0.9115 36 1 6.8406 -6.7363 1.0199 37 1 6.0239 -5.5330 2.0473 38 1 8.7002 -5.1277 0.6359 39 1 8.5255 -5.2602 3.5476 40 1 10.1985 -7.2905 5.5986 41 1 8.7870 -3.0564 2.0126 42 1 7.1503 -3.4034 2.6217 43 1 7.9428 -2.8893 -0.2822 44 1 6.9830 -1.8135 0.7639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997157251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:04 Heat of formation + Delta-G solvation = 105.534319 kcal Electronic energy + Delta-G solvation = -27746.375720 eV Core-core repulsion = 23894.558579 eV Total energy + Delta-G solvation = -3851.817141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.38453 -40.17592 -38.69633 -37.28292 -34.93760 -34.33354 -32.20498 -31.95056 -30.88753 -30.02425 -29.14387 -28.33399 -25.64978 -24.39822 -23.76850 -22.76889 -22.50874 -21.28969 -20.60186 -19.33688 -18.71597 -18.02822 -17.03210 -16.67996 -16.22361 -15.98148 -15.88393 -15.09697 -14.85924 -14.74333 -14.26526 -13.86978 -13.68764 -13.65863 -13.49492 -13.39594 -13.18540 -13.09658 -12.66088 -12.60033 -12.34131 -11.97800 -11.63301 -11.47000 -10.87978 -10.83156 -10.76595 -10.43752 -10.42244 -10.28430 -10.18219 -9.97557 -9.67367 -9.24813 -9.13249 -8.85329 -8.59600 -8.36970 -6.92531 -5.73706 -3.02269 -0.29912 0.79483 1.91210 2.36084 2.55745 2.83028 3.39780 3.45460 3.50751 3.52429 3.54514 3.66120 3.84743 4.15870 4.58580 4.62377 4.68130 4.70510 4.79692 5.20145 5.31765 5.34630 5.37072 5.44392 5.47566 5.59059 5.62013 5.64680 5.66528 5.84371 5.93044 6.03929 6.17073 6.28689 6.34811 6.37828 6.40967 6.55142 6.63778 6.70745 7.00878 7.03464 7.13953 7.47163 7.54158 7.72703 8.17968 8.44900 9.55939 10.14335 10.49025 11.49048 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.002519 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.676058 B =11112.428516 C =11588.920962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.059 3.941 3 C -0.082 4.082 4 N -0.355 5.355 5 C 0.033 3.967 6 C 0.023 3.977 7 N -0.415 5.415 8 C 0.187 3.813 9 C 0.567 3.433 10 O -0.504 6.504 11 N -0.582 5.582 12 C 0.113 3.887 13 C -0.150 4.150 14 C 0.178 3.822 15 N -0.725 5.725 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.140 4.140 25 C 0.082 3.918 26 C 0.196 3.804 27 N -0.431 5.431 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.190 0.810 32 H 0.176 0.824 33 H 0.187 0.813 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 22.683 -12.103 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.216 4.216 4 N -0.029 5.029 5 C -0.093 4.093 6 C -0.116 4.116 7 N -0.131 5.131 8 C 0.023 3.977 9 C 0.351 3.649 10 O -0.378 6.378 11 N -0.314 5.314 12 C -0.009 4.009 13 C -0.191 4.191 14 C 0.067 3.933 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.179 4.179 25 C -0.041 4.041 26 C -0.052 4.052 27 N -0.151 5.151 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.207 0.793 32 H 0.193 0.807 33 H 0.204 0.796 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.152 21.159 -12.230 27.754 hybrid contribution 0.300 0.716 0.379 0.864 sum -12.853 21.875 -11.852 28.003 Atomic orbital electron populations 1.20187 0.86212 1.03542 1.03170 1.21323 0.97435 0.87597 1.01136 1.22511 0.80258 1.01461 1.17338 1.42837 1.06351 1.08994 1.44743 1.22739 0.83093 1.00780 1.02646 1.22307 0.97860 0.89702 1.01770 1.68353 1.26023 1.08160 1.10592 1.22362 0.83898 0.95086 0.96371 1.17248 0.84293 0.84123 0.79221 1.90879 1.31366 1.66676 1.48833 1.47983 1.08595 1.08813 1.66030 1.21720 1.02363 0.77960 0.98885 1.22585 0.99480 1.00867 0.96141 1.20209 0.91694 0.89664 0.91690 1.42446 1.60245 1.29305 1.04484 1.19246 1.23261 1.00898 0.93372 0.91164 1.24744 1.01491 0.99453 0.95393 1.69664 1.49364 1.41400 0.97795 0.86206 0.80162 0.83146 0.76782 1.21788 1.21847 1.20761 1.22242 1.00929 0.97490 0.97267 1.22853 0.85127 0.99079 0.97060 1.22417 0.94594 0.80218 1.07959 1.70587 0.97750 1.28575 1.18221 0.90365 0.90619 0.90163 0.79287 0.80711 0.79590 0.89508 0.91402 0.90592 0.92215 0.93407 0.78333 0.93568 0.90588 0.92188 0.91449 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.15 16 2 C 0.06 0.64 7.07 -82.87 -0.59 0.05 16 3 C -0.08 -0.70 11.70 -16.66 -0.19 -0.89 16 4 N -0.36 -3.57 2.95 -61.13 -0.18 -3.75 16 5 C 0.03 0.21 11.00 -16.59 -0.18 0.03 16 6 C 0.02 0.17 11.01 -18.17 -0.20 -0.03 16 7 N -0.42 -4.63 6.29 -8.68 -0.05 -4.69 16 8 C 0.19 2.65 6.79 -80.54 -0.55 2.10 16 9 C 0.57 9.44 7.65 -12.35 -0.09 9.35 16 10 O -0.50 -9.89 15.70 5.31 0.08 -9.81 16 11 N -0.58 -9.05 2.98 -174.16 -0.52 -9.57 16 12 C 0.11 1.79 6.42 -3.93 -0.03 1.77 16 13 C -0.15 -2.78 5.64 -26.83 -0.15 -2.93 16 14 C 0.18 3.51 2.73 -67.89 -0.19 3.32 16 15 N -0.72 -18.17 5.12 -53.39 -0.27 -18.44 16 16 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 25 C 0.08 1.13 5.88 -3.71 -0.02 1.11 16 26 C 0.20 2.76 7.66 -153.99 -1.18 1.57 16 27 N -0.43 -6.57 10.76 -7.53 -0.08 -6.65 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.19 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.19 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.09 1.42 7.01 -51.93 -0.36 1.06 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.13 1.67 4.12 -78.24 -0.32 1.35 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -36.38 363.28 -9.28 -45.66 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.04 Total: 6.36 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -3.39 Total: 5.62 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -0.38 Total: -70.79 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.38 -9.28 -45.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997157251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.192 kcal (2) G-P(sol) polarization free energy of solvation -36.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds