Wall clock time and date at job start Tue Mar 31 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39969 * 119.94759 * 2 1 4 4 C 1.35745 * 119.35653 * 179.97438 * 3 2 1 5 5 N 1.36316 * 119.15748 * 359.97438 * 4 3 2 6 6 N 1.39908 * 132.16166 * 180.02562 * 5 4 3 7 7 C 1.30692 * 109.52192 * 180.02562 * 6 5 4 8 8 C 1.40647 * 108.72522 * 359.97438 * 7 6 5 9 9 C 1.46585 * 126.53866 * 180.02562 * 8 7 6 10 10 O 1.21714 * 119.99890 * 220.07276 * 9 8 7 11 11 N 1.34773 * 119.99950 * 40.06219 * 9 8 7 12 12 C 1.46922 * 120.63050 * 5.23433 * 11 9 8 13 13 C 1.53624 * 108.54326 * 126.36851 * 12 11 9 14 14 C 1.53030 * 109.24716 * 54.85135 * 13 12 11 15 15 N 1.46504 * 109.46490 * 178.48992 * 14 13 12 16 16 C 1.36934 * 120.00092 * 275.07492 * 15 14 13 17 17 H 1.08001 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99864 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99972 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47277 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47336 * 119.99620 * 20 18 16 23 23 H 1.48510 * 109.46975 * 239.99126 * 20 18 16 24 24 C 1.53042 * 109.54141 * 298.51599 * 14 13 12 25 25 C 1.46925 * 120.62798 * 185.50635 * 11 9 8 26 26 C 1.36596 * 119.73019 * 0.02562 * 5 4 3 27 27 N 1.31503 * 119.94537 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47058 * 90.00704 * 1 2 3 29 29 H 1.09004 * 109.46850 * 210.00159 * 1 2 3 30 30 H 1.08996 * 109.47246 * 330.00556 * 1 2 3 31 31 H 1.07998 * 120.31617 * 359.71579 * 3 2 1 32 32 H 1.08004 * 120.41946 * 179.97438 * 4 3 2 33 33 H 1.08003 * 125.63902 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.58783 * 246.19524 * 12 11 9 35 35 H 1.09001 * 109.58751 * 6.62245 * 12 11 9 36 36 H 1.09005 * 109.63321 * 294.85780 * 13 12 11 37 37 H 1.09003 * 109.43085 * 174.72879 * 13 12 11 38 38 H 1.09009 * 109.45982 * 58.53334 * 14 13 12 39 39 H 0.96999 * 119.99820 * 95.06934 * 15 14 13 40 40 H 0.97001 * 119.99748 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.49186 * 301.40842 * 24 14 13 42 42 H 1.08997 * 109.52665 * 181.32914 * 24 14 13 43 43 H 1.08998 * 109.59283 * 353.37962 * 25 11 9 44 44 H 1.09007 * 109.58390 * 113.66187 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5631 1.1988 0.0005 5 7 4.2149 0.0016 0.0016 6 7 5.5748 -0.3273 0.0028 7 6 5.7098 -1.6272 0.0029 8 6 4.4315 -2.2139 0.0024 9 6 4.1295 -3.6483 0.0029 10 8 3.2153 -4.0780 -0.6760 11 7 4.8644 -4.4913 0.7550 12 6 5.8956 -3.9764 1.6660 13 6 5.6316 -4.5392 3.0709 14 6 5.5637 -6.0663 2.9979 15 7 5.3480 -6.6101 4.3411 16 6 6.4149 -6.8267 5.1715 17 1 7.4156 -6.5972 4.8363 18 6 6.2106 -7.3425 6.4440 19 7 4.9911 -7.6228 6.8524 20 14 7.6661 -7.6387 7.5766 21 1 8.9198 -7.2454 6.8847 22 1 7.5061 -6.8283 8.8107 23 1 7.7296 -9.0786 7.9348 24 6 4.4073 -6.4843 2.0868 25 6 4.6535 -5.9432 0.6749 26 6 3.4971 -1.1605 0.0016 27 7 2.1634 -1.1395 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6701 2.1506 -0.0046 32 1 4.1195 2.1245 0.0001 33 1 6.6478 -2.1625 0.0034 34 1 6.8796 -4.2941 1.3211 35 1 5.8493 -2.8877 1.6924 36 1 4.6862 -4.1506 3.4494 37 1 6.4407 -4.2424 3.7383 38 1 6.5005 -6.4527 2.5961 39 1 4.4493 -6.8166 4.6421 40 1 4.8482 -7.9828 7.7417 41 1 3.4733 -6.0774 2.4746 42 1 4.3444 -7.5719 2.0537 43 1 3.7875 -6.1527 0.0471 44 1 5.5374 -6.4178 0.2485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997186347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:47 Heat of formation + Delta-G solvation = 102.143695 kcal Electronic energy + Delta-G solvation = -27768.325978 eV Core-core repulsion = 23916.361808 eV Total energy + Delta-G solvation = -3851.964170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75182 -39.79830 -38.53076 -37.10695 -34.56894 -34.33520 -32.56818 -32.01766 -30.97093 -29.80174 -29.10255 -28.51884 -25.20317 -24.47157 -23.26279 -23.12993 -22.52199 -21.86348 -20.27297 -19.27223 -18.25656 -17.69309 -17.05095 -16.72672 -16.43820 -15.90669 -15.38077 -14.88725 -14.75313 -14.59916 -14.16275 -14.12920 -13.72809 -13.65193 -13.45191 -13.25702 -13.10045 -12.86172 -12.72419 -12.37188 -12.13902 -11.80785 -11.76409 -11.55097 -11.40095 -10.92872 -10.82216 -10.76964 -10.40889 -10.17515 -10.13162 -9.82787 -9.76630 -9.65447 -9.60074 -8.88679 -8.40721 -8.14327 -6.94572 -5.75449 -3.04308 0.08239 0.45840 1.62730 1.98674 2.82505 3.09275 3.38235 3.43327 3.47877 3.49254 3.51214 3.76818 3.86825 4.36828 4.59290 4.61975 4.73895 4.83840 4.93322 5.09974 5.12634 5.20279 5.22388 5.36977 5.42810 5.45209 5.52689 5.58333 5.70489 5.72515 5.79385 5.91204 6.02021 6.09159 6.11990 6.30609 6.45220 6.49809 6.58617 6.75306 6.97566 7.01265 7.10893 7.33438 7.67909 7.70854 8.42935 8.47116 9.54051 10.12585 10.47260 11.47274 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.002716 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.884127 B =10308.420853 C =10428.806723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.209 3.791 3 C -0.222 4.222 4 C 0.169 3.831 5 N -0.312 5.312 6 N -0.312 5.312 7 C 0.130 3.870 8 C -0.279 4.279 9 C 0.601 3.399 10 O -0.539 6.539 11 N -0.603 5.603 12 C 0.104 3.896 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.725 5.725 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.139 4.139 25 C 0.120 3.880 26 C 0.318 3.682 27 N -0.451 5.451 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.207 0.793 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 20.357 -16.915 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.047 3.953 3 C -0.245 4.245 4 C 0.033 3.967 5 N -0.081 5.081 6 N -0.134 5.134 7 C -0.051 4.051 8 C -0.296 4.296 9 C 0.389 3.611 10 O -0.416 6.416 11 N -0.336 5.336 12 C -0.020 4.020 13 C -0.190 4.190 14 C 0.069 3.931 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.178 4.178 25 C -0.003 4.003 26 C 0.086 3.914 27 N -0.164 5.164 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.201 0.799 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.707 20.230 -17.180 26.954 hybrid contribution 0.650 -0.040 1.025 1.214 sum -4.057 20.190 -16.155 26.174 Atomic orbital electron populations 1.20865 0.86704 1.04797 1.04269 1.22083 0.98234 0.87373 0.87626 1.21747 0.92446 1.01351 1.09004 1.22107 0.92684 0.88489 0.93397 1.46984 1.07700 1.06351 1.47057 1.77586 0.88697 1.15785 1.31307 1.24203 0.98298 0.90432 0.92201 1.19363 0.90706 0.93342 1.26168 1.16774 0.81311 0.83763 0.79299 1.90781 1.29978 1.77742 1.43140 1.47937 1.37536 1.06863 1.41275 1.22101 0.90385 0.98824 0.90677 1.22727 1.02330 1.00061 0.93897 1.20170 0.95614 0.90588 0.86708 1.42459 1.07411 1.75806 1.10821 1.19282 0.88011 1.35103 0.94422 0.91114 1.24753 0.96385 1.02167 0.97776 1.69681 1.18931 1.50335 1.19134 0.86141 0.81768 0.77480 0.80945 1.20556 1.21957 1.21904 1.22197 1.00177 1.01139 0.94241 1.21592 1.02120 0.78578 0.98004 1.20277 0.87856 0.86194 0.97027 1.68107 1.03786 1.28618 1.15854 0.88961 0.89219 0.89479 0.81211 0.79901 0.77679 0.91400 0.90483 0.92338 0.90813 0.93376 0.78279 0.93591 0.91849 0.90592 0.89310 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.19 36.01 0.37 -0.23 16 2 C 0.21 1.88 6.83 -82.09 -0.56 1.32 16 3 C -0.22 -1.29 9.72 -39.83 -0.39 -1.68 16 4 C 0.17 1.23 11.29 -16.45 -0.19 1.05 16 5 N -0.31 -3.70 3.86 -11.97 -0.05 -3.74 16 6 N -0.31 -3.84 12.58 30.76 0.39 -3.46 16 7 C 0.13 1.56 9.55 -17.13 -0.16 1.39 16 8 C -0.28 -4.19 5.25 -104.65 -0.55 -4.74 16 9 C 0.60 10.23 7.56 -12.90 -0.10 10.14 16 10 O -0.54 -10.89 16.51 5.18 0.09 -10.81 16 11 N -0.60 -9.31 2.97 -174.08 -0.52 -9.83 16 12 C 0.10 1.44 5.48 -3.49 -0.02 1.42 16 13 C -0.15 -2.63 5.67 -26.39 -0.15 -2.78 16 14 C 0.18 3.52 2.73 -67.89 -0.19 3.33 16 15 N -0.72 -18.14 5.12 -53.38 -0.27 -18.42 16 16 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 25 C 0.12 1.83 6.44 -3.71 -0.02 1.80 16 26 C 0.32 4.63 7.88 -155.83 -1.23 3.40 16 27 N -0.45 -6.31 10.39 -8.24 -0.09 -6.39 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 32 H 0.18 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.21 1.78 7.29 -52.48 -0.38 1.40 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.99 4.75 -51.93 -0.25 0.74 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 39 H 0.38 10.36 7.80 -40.82 -0.32 10.05 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 44 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -37.50 365.33 -8.74 -46.24 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.92 Total: 6.48 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.58 Total: 4.69 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: 0.19 Total: -69.43 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.50 -8.74 -46.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997186347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.386 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds