Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30899 * 119.96487 * 2 1 4 4 C 1.34156 * 121.17196 * 179.97438 * 3 2 1 5 5 C 1.38703 * 132.24891 * 179.97438 * 4 3 2 6 6 C 1.38839 * 107.67200 * 180.02562 * 5 4 3 7 7 N 1.31298 * 108.99558 * 0.02562 * 6 5 4 8 8 N 1.37264 * 120.90014 * 0.02562 * 4 3 2 9 9 C 1.36074 * 119.97162 * 359.71406 * 8 4 3 10 10 C 1.50708 * 120.55396 * 180.30376 * 9 8 4 11 11 C 1.38065 * 118.89515 * 0.55171 * 9 8 4 12 12 C 1.47596 * 120.50921 * 179.72963 * 11 9 8 13 13 O 1.21592 * 119.99533 * 269.72567 * 12 11 9 14 14 N 1.34773 * 120.00297 * 89.71873 * 12 11 9 15 15 C 1.46503 * 120.00106 * 180.02562 * 14 12 11 16 16 H 1.08992 * 112.84882 * 314.75507 * 15 14 12 17 17 C 1.53781 * 113.61316 * 85.94909 * 15 14 12 18 18 C 1.53778 * 87.08073 * 89.19900 * 17 15 14 19 19 H 1.09003 * 113.61568 * 140.06743 * 18 17 15 20 20 N 1.46508 * 113.61631 * 270.88472 * 18 17 15 21 21 C 1.36939 * 120.00051 * 202.41910 * 20 18 17 22 22 H 1.08002 * 119.99940 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00034 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46940 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46837 * 240.00057 * 25 23 21 28 28 H 1.48492 * 109.47247 * 119.99984 * 25 23 21 29 29 C 1.53777 * 113.69022 * 183.48455 * 15 14 12 30 30 H 1.08996 * 109.47117 * 270.02103 * 1 2 3 31 31 H 1.09002 * 109.47214 * 30.02504 * 1 2 3 32 32 H 1.08996 * 109.46859 * 150.02012 * 1 2 3 33 33 H 1.07994 * 126.16252 * 0.02653 * 5 4 3 34 34 H 1.08001 * 125.50605 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.46939 * 270.24989 * 10 9 8 36 36 H 1.08992 * 109.47558 * 30.25145 * 10 9 8 37 37 H 1.08997 * 109.47169 * 150.25685 * 10 9 8 38 38 H 0.96997 * 119.99612 * 0.02562 * 14 12 11 39 39 H 1.09002 * 113.61006 * 334.65363 * 17 15 14 40 40 H 1.09000 * 113.61348 * 203.74865 * 17 15 14 41 41 H 0.96999 * 119.99876 * 22.41914 * 20 18 17 42 42 H 0.96996 * 119.99591 * 0.02562 * 24 23 21 43 43 H 1.08993 * 113.61847 * 156.32714 * 29 15 14 44 44 H 1.09004 * 113.61688 * 25.42271 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1623 0.0005 5 6 4.4128 2.2084 0.0002 6 6 5.6873 1.6577 0.0005 7 7 5.5871 0.3485 0.0004 8 7 4.2316 -0.0004 0.0005 9 6 3.5944 -1.2028 0.0059 10 6 4.3825 -2.4874 0.0129 11 6 2.2140 -1.2263 -0.0004 12 6 1.4865 -2.5105 -0.0008 13 8 1.1873 -3.0392 -1.0541 14 7 1.1539 -3.0971 1.1661 15 6 0.4322 -4.3720 1.1655 16 1 -0.3966 -4.3889 0.4579 17 6 1.3520 -5.6004 1.0663 18 6 1.4160 -5.5786 2.6026 19 1 1.3827 -6.5697 3.0552 20 7 2.4992 -4.7470 3.1332 21 6 2.9782 -4.9706 4.3965 22 1 2.5576 -5.7603 5.0015 23 6 4.0048 -4.1831 4.8990 24 7 4.5183 -3.2217 4.1611 25 14 4.6587 -4.4886 6.6219 26 1 3.9187 -5.6186 7.2390 27 1 4.4727 -3.2671 7.4457 28 1 6.1038 -4.8226 6.5509 29 6 0.0527 -4.8677 2.5709 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 4.1736 3.2615 -0.0002 34 1 6.6118 2.2159 -0.0001 35 1 4.5771 -2.7998 -1.0132 36 1 5.3287 -2.3305 0.5306 37 1 3.8114 -3.2611 0.5260 38 1 1.3924 -2.6751 2.0062 39 1 2.3084 -5.3921 0.5866 40 1 0.8582 -6.4842 0.6624 41 1 2.8771 -4.0380 2.5897 42 1 4.1790 -3.0634 3.2663 43 1 -0.7963 -5.5512 2.5783 44 1 -0.0400 -4.0680 3.3058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022331138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = 116.895876 kcal Electronic energy + Delta-G solvation = -28960.753333 eV Core-core repulsion = 25109.428866 eV Total energy + Delta-G solvation = -3851.324467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39144 -40.26897 -38.62065 -37.51888 -35.11745 -34.07959 -33.02616 -32.04189 -30.25216 -29.68994 -28.51999 -27.93137 -25.38783 -24.77849 -23.91420 -22.79952 -22.17295 -20.94534 -20.62960 -19.11043 -18.58569 -18.03149 -17.41878 -16.42587 -16.08947 -15.86915 -15.31447 -14.94038 -14.83872 -14.34169 -14.02688 -13.89581 -13.83453 -13.77462 -13.37348 -13.26814 -13.22341 -13.02729 -12.54302 -12.25704 -12.19719 -11.98482 -11.85939 -11.58279 -11.33497 -10.89049 -10.84076 -10.65786 -10.52374 -10.28768 -10.13662 -9.93076 -9.70857 -9.40852 -9.33386 -9.08866 -8.80040 -7.90634 -7.22761 -6.25650 -3.28254 0.44172 0.69037 1.84677 2.54509 2.57889 3.13386 3.31710 3.44190 3.49473 3.59091 3.66933 3.97359 4.07016 4.52567 4.61661 4.85643 4.92692 4.99586 5.03254 5.09941 5.23193 5.27548 5.34349 5.35660 5.39259 5.43851 5.45701 5.62409 5.69480 5.70735 5.78393 5.93122 5.98126 6.04062 6.08354 6.19768 6.31139 6.39254 6.46129 6.48615 6.59646 6.81958 7.37889 7.53335 7.58052 7.70145 8.16872 8.57786 9.03245 9.89592 10.03795 11.20736 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.005051 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.688082 B = 5542.135722 C = 7398.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.244 3.756 3 N -0.475 5.475 4 C 0.268 3.732 5 C -0.270 4.270 6 C 0.094 3.906 7 N -0.303 5.303 8 N -0.311 5.311 9 C 0.258 3.742 10 C -0.126 4.126 11 C -0.248 4.248 12 C 0.587 3.413 13 O -0.527 6.527 14 N -0.692 5.692 15 C 0.125 3.875 16 H 0.087 0.913 17 C -0.168 4.168 18 C 0.169 3.831 19 H 0.066 0.934 20 N -0.718 5.718 21 C -0.336 4.336 22 H 0.069 0.931 23 C -0.042 4.042 24 N -0.938 5.938 25 Si 1.085 2.915 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.292 1.292 29 C -0.178 4.178 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.200 0.800 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.365 0.635 42 H 0.251 0.749 43 H 0.087 0.913 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 5.411 -8.672 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 N -0.188 5.188 4 C 0.043 3.957 5 C -0.301 4.301 6 C -0.086 4.086 7 N -0.126 5.126 8 N -0.082 5.082 9 C 0.140 3.860 10 C -0.183 4.183 11 C -0.258 4.258 12 C 0.370 3.630 13 O -0.404 6.404 14 N -0.344 5.344 15 C 0.020 3.980 16 H 0.104 0.896 17 C -0.208 4.208 18 C 0.057 3.943 19 H 0.085 0.915 20 N -0.359 5.359 21 C -0.466 4.466 22 H 0.087 0.913 23 C -0.239 4.239 24 N -0.583 5.583 25 Si 0.916 3.084 26 H -0.220 1.220 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.219 4.219 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.180 0.820 34 H 0.216 0.784 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.200 0.800 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.909 5.218 -8.106 10.819 hybrid contribution -0.834 0.051 -0.836 1.182 sum -5.743 5.269 -8.942 11.862 Atomic orbital electron populations 1.20897 0.86734 1.04792 1.04443 1.21767 0.97498 0.85835 0.86960 1.67949 1.03960 1.27819 1.19113 1.20788 0.88090 0.86983 0.99869 1.20950 0.89618 0.98564 1.20955 1.23925 0.98957 0.91049 0.94653 1.77925 0.89148 1.15374 1.30124 1.46994 1.07684 1.05483 1.48061 1.20932 0.90623 0.86710 0.87717 1.21147 1.01747 0.90665 1.04729 1.20261 0.91566 0.96675 1.17294 1.17330 0.78668 0.82637 0.84328 1.90807 1.54293 1.64160 1.31100 1.45915 1.57311 1.22783 1.08390 1.21834 0.94575 0.82504 0.99093 0.89552 1.23874 1.00047 0.97539 0.99336 1.21132 0.87517 0.94406 0.91268 0.91548 1.42274 1.39480 1.38184 1.15921 1.20148 1.17808 1.17029 0.91664 0.91293 1.25794 0.96114 0.95932 1.06087 1.70908 1.44375 1.32508 1.10532 0.83149 0.75911 0.75164 0.74217 1.22007 1.21996 1.21932 1.24141 1.01390 1.01627 0.94753 0.88725 0.89066 0.89555 0.82006 0.78378 0.88310 0.87855 0.88520 0.75354 0.91492 0.89300 0.80050 0.93784 0.89500 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.82 36.00 0.35 -0.88 16 2 C 0.24 3.61 6.87 -81.73 -0.56 3.05 16 3 N -0.48 -7.59 10.37 -8.17 -0.08 -7.68 16 4 C 0.27 4.47 7.91 -155.32 -1.23 3.24 16 5 C -0.27 -3.76 10.91 -39.19 -0.43 -4.19 16 6 C 0.09 1.24 11.94 -17.56 -0.21 1.03 16 7 N -0.30 -5.03 12.50 30.49 0.38 -4.65 16 8 N -0.31 -5.39 3.88 -7.99 -0.03 -5.42 16 9 C 0.26 4.36 6.93 -80.77 -0.56 3.80 16 10 C -0.13 -2.01 9.71 36.01 0.35 -1.66 16 11 C -0.25 -3.94 5.64 -104.88 -0.59 -4.54 16 12 C 0.59 9.32 4.32 -12.44 -0.05 9.27 16 13 O -0.53 -9.46 17.03 5.28 0.09 -9.37 16 14 N -0.69 -10.60 4.36 -54.04 -0.24 -10.84 16 15 C 0.12 1.82 4.00 -67.12 -0.27 1.55 16 16 H 0.09 1.18 8.03 -51.93 -0.42 0.77 16 17 C -0.17 -2.61 7.62 -25.92 -0.20 -2.81 16 18 C 0.17 3.05 4.56 -67.11 -0.31 2.74 16 19 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 20 N -0.72 -16.16 5.01 -52.63 -0.26 -16.43 16 21 C -0.34 -8.75 9.97 -15.06 -0.15 -8.90 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 24 N -0.94 -27.19 13.70 55.49 0.76 -26.43 16 25 Si 1.08 24.99 29.92 -169.99 -5.09 19.91 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.18 -2.64 7.58 -25.92 -0.20 -2.84 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.95 7.13 -51.93 -0.37 0.58 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.10 1.74 8.12 -51.93 -0.42 1.32 16 37 H 0.10 1.62 7.10 -51.93 -0.37 1.26 16 38 H 0.41 6.73 7.76 -40.82 -0.32 6.42 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.37 8.33 5.16 -40.82 -0.21 8.12 16 42 H 0.25 7.06 6.77 -40.82 -0.28 6.79 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.67 370.48 -8.84 -41.51 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -5.81 Total: 16.17 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -4.14 Total: -2.36 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: 0.53 Total: -71.45 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.67 -8.84 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022331138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.407 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds