Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30899 * 119.96487 * 2 1 4 4 C 1.34156 * 121.17196 * 179.97438 * 3 2 1 5 5 C 1.38703 * 132.24891 * 179.97438 * 4 3 2 6 6 C 1.38839 * 107.67200 * 180.02562 * 5 4 3 7 7 N 1.31298 * 108.99558 * 0.02562 * 6 5 4 8 8 N 1.37264 * 120.90014 * 0.02562 * 4 3 2 9 9 C 1.36074 * 119.97162 * 359.71406 * 8 4 3 10 10 C 1.50708 * 120.55396 * 180.30376 * 9 8 4 11 11 C 1.38065 * 118.89515 * 0.55171 * 9 8 4 12 12 C 1.47596 * 120.50921 * 179.72963 * 11 9 8 13 13 O 1.21592 * 119.99533 * 269.72567 * 12 11 9 14 14 N 1.34773 * 120.00297 * 89.71873 * 12 11 9 15 15 C 1.46503 * 120.00106 * 180.02562 * 14 12 11 16 16 H 1.08992 * 112.84882 * 314.75507 * 15 14 12 17 17 C 1.53781 * 113.61316 * 85.94909 * 15 14 12 18 18 C 1.53778 * 87.08073 * 89.19900 * 17 15 14 19 19 H 1.09003 * 113.61568 * 140.06743 * 18 17 15 20 20 N 1.46508 * 113.61631 * 270.88472 * 18 17 15 21 21 C 1.36939 * 120.00051 * 202.41910 * 20 18 17 22 22 H 1.08002 * 119.99940 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00034 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99915 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46940 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46837 * 240.00057 * 25 23 21 28 28 H 1.48492 * 109.47247 * 119.99984 * 25 23 21 29 29 C 1.53777 * 113.69022 * 183.48455 * 15 14 12 30 30 H 1.08996 * 109.47117 * 270.02103 * 1 2 3 31 31 H 1.09002 * 109.47214 * 30.02504 * 1 2 3 32 32 H 1.08996 * 109.46859 * 150.02012 * 1 2 3 33 33 H 1.07994 * 126.16252 * 0.02653 * 5 4 3 34 34 H 1.08001 * 125.50605 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.46939 * 270.24989 * 10 9 8 36 36 H 1.08992 * 109.47558 * 30.25145 * 10 9 8 37 37 H 1.08997 * 109.47169 * 150.25685 * 10 9 8 38 38 H 0.96997 * 119.99612 * 0.02562 * 14 12 11 39 39 H 1.09002 * 113.61006 * 334.65363 * 17 15 14 40 40 H 1.09000 * 113.61348 * 203.74865 * 17 15 14 41 41 H 0.96999 * 119.99876 * 22.41914 * 20 18 17 42 42 H 0.96996 * 119.99591 * 0.02562 * 24 23 21 43 43 H 1.08993 * 113.61847 * 156.32714 * 29 15 14 44 44 H 1.09004 * 113.61688 * 25.42271 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1623 0.0005 5 6 4.4128 2.2084 0.0002 6 6 5.6873 1.6577 0.0005 7 7 5.5871 0.3485 0.0004 8 7 4.2316 -0.0004 0.0005 9 6 3.5944 -1.2028 0.0059 10 6 4.3825 -2.4874 0.0129 11 6 2.2140 -1.2263 -0.0004 12 6 1.4865 -2.5105 -0.0008 13 8 1.1873 -3.0392 -1.0541 14 7 1.1539 -3.0971 1.1661 15 6 0.4322 -4.3720 1.1655 16 1 -0.3966 -4.3889 0.4579 17 6 1.3520 -5.6004 1.0663 18 6 1.4160 -5.5786 2.6026 19 1 1.3827 -6.5697 3.0552 20 7 2.4992 -4.7470 3.1332 21 6 2.9782 -4.9706 4.3965 22 1 2.5576 -5.7603 5.0015 23 6 4.0048 -4.1831 4.8990 24 7 4.5183 -3.2217 4.1611 25 14 4.6587 -4.4886 6.6219 26 1 3.9187 -5.6186 7.2390 27 1 4.4727 -3.2671 7.4457 28 1 6.1038 -4.8226 6.5509 29 6 0.0527 -4.8677 2.5709 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 4.1736 3.2615 -0.0002 34 1 6.6118 2.2159 -0.0001 35 1 4.5771 -2.7998 -1.0132 36 1 5.3287 -2.3305 0.5306 37 1 3.8114 -3.2611 0.5260 38 1 1.3924 -2.6751 2.0062 39 1 2.3084 -5.3921 0.5866 40 1 0.8582 -6.4842 0.6624 41 1 2.8771 -4.0380 2.5897 42 1 4.1790 -3.0634 3.2663 43 1 -0.7963 -5.5512 2.5783 44 1 -0.0400 -4.0680 3.3058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022331138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = 95.910706 kcal Electronic energy + Delta-G solvation = -28961.663319 eV Core-core repulsion = 25109.428866 eV Total energy + Delta-G solvation = -3852.234453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.55206 -41.54740 -39.88585 -38.77099 -36.31587 -35.86992 -34.38985 -33.20519 -31.59498 -31.30708 -29.74635 -29.00320 -26.68588 -26.21195 -25.53370 -24.23017 -23.29243 -22.17290 -21.84572 -20.46531 -19.77219 -19.62707 -18.95978 -17.66452 -17.29280 -17.13985 -16.80691 -16.23723 -16.12258 -15.78896 -15.49186 -15.39280 -15.00910 -14.90416 -14.83395 -14.56727 -14.33467 -14.24245 -13.63499 -13.56752 -13.33457 -13.27200 -13.09957 -12.89289 -12.69929 -12.49543 -12.36523 -12.04035 -11.97303 -11.88602 -11.57806 -11.42335 -11.08242 -10.93846 -10.92534 -10.59620 -10.11771 -9.11519 -9.06682 -8.37032 -5.32885 -0.76607 -0.47072 0.66297 1.30829 1.47540 1.57800 1.67067 1.78676 1.92140 2.13497 2.56687 2.68686 2.80598 2.93915 3.38600 3.39172 3.60549 3.69189 3.76593 3.86510 3.90115 3.98647 4.05034 4.13212 4.20355 4.30981 4.31939 4.48861 4.54590 4.59352 4.73070 4.75084 4.83508 4.85777 4.93853 4.99244 5.04688 5.18309 5.19784 5.26042 5.43193 5.49586 5.69136 6.24243 6.24965 6.40515 6.50282 6.88849 7.09196 8.00025 8.10593 9.13391 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.005051 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.688082 B = 5542.135722 C = 7398.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.239 3.761 3 N -0.483 5.483 4 C 0.235 3.765 5 C -0.264 4.264 6 C 0.104 3.896 7 N -0.340 5.340 8 N -0.326 5.326 9 C 0.238 3.762 10 C -0.116 4.116 11 C -0.255 4.255 12 C 0.598 3.402 13 O -0.548 6.548 14 N -0.689 5.689 15 C 0.127 3.873 16 H 0.108 0.892 17 C -0.158 4.158 18 C 0.146 3.854 19 H 0.063 0.937 20 N -0.730 5.730 21 C -0.326 4.326 22 H 0.069 0.931 23 C -0.099 4.099 24 N -0.973 5.973 25 Si 1.126 2.874 26 H -0.271 1.271 27 H -0.296 1.296 28 H -0.297 1.297 29 C -0.156 4.156 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.191 0.809 34 H 0.245 0.755 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.404 0.596 39 H 0.044 0.956 40 H 0.120 0.880 41 H 0.361 0.639 42 H 0.243 0.757 43 H 0.123 0.877 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 5.590 -8.745 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 N -0.196 5.196 4 C 0.010 3.990 5 C -0.294 4.294 6 C -0.075 4.075 7 N -0.162 5.162 8 N -0.098 5.098 9 C 0.120 3.880 10 C -0.172 4.172 11 C -0.265 4.265 12 C 0.382 3.618 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.022 3.978 16 H 0.125 0.875 17 C -0.198 4.198 18 C 0.036 3.964 19 H 0.081 0.919 20 N -0.372 5.372 21 C -0.458 4.458 22 H 0.087 0.913 23 C -0.291 4.291 24 N -0.621 5.621 25 Si 0.953 3.047 26 H -0.195 1.195 27 H -0.223 1.223 28 H -0.224 1.224 29 C -0.196 4.196 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.208 0.792 34 H 0.261 0.739 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.240 0.760 39 H 0.063 0.937 40 H 0.138 0.862 41 H 0.195 0.805 42 H 0.054 0.946 43 H 0.141 0.859 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.462 5.359 -8.193 11.730 hybrid contribution -0.377 -0.027 -0.849 0.929 sum -6.839 5.332 -9.042 12.528 Atomic orbital electron populations 1.21006 0.84066 1.05682 1.05627 1.22332 0.99111 0.85115 0.86062 1.68011 1.03816 1.28119 1.19687 1.21409 0.88827 0.87627 1.01107 1.21467 0.89319 0.99409 1.19226 1.24735 1.00504 0.90014 0.92273 1.77876 0.89346 1.17462 1.31554 1.47099 1.07990 1.05621 1.49047 1.21090 0.91269 0.87016 0.88589 1.21008 1.00632 0.90396 1.05202 1.20375 0.91373 0.97254 1.17464 1.17222 0.78116 0.82411 0.84033 1.90789 1.55337 1.64756 1.31688 1.45924 1.57069 1.22981 1.07885 1.21946 0.94644 0.81691 0.99484 0.87461 1.23859 0.99596 0.99350 0.96969 1.21469 0.88032 0.93968 0.92948 0.91880 1.42397 1.40886 1.38874 1.15025 1.20430 1.16717 1.15804 0.92805 0.91291 1.26938 0.97234 0.96169 1.08788 1.70989 1.45947 1.34365 1.10761 0.82607 0.75345 0.75594 0.71189 1.19534 1.22301 1.22428 1.23977 1.00238 1.01168 0.94243 0.87176 0.87341 0.89394 0.79227 0.73886 0.86832 0.89443 0.89818 0.76028 0.93713 0.86176 0.80526 0.94622 0.85882 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.82 71.24 0.70 -1.51 16 2 C 0.24 7.01 6.87 43.51 0.30 7.31 16 3 N -0.48 -15.31 10.37 -179.76 -1.86 -17.17 16 4 C 0.23 7.81 7.91 133.01 1.05 8.86 16 5 C -0.26 -7.00 10.91 22.52 0.25 -6.75 16 6 C 0.10 2.59 11.94 84.92 1.01 3.61 16 7 N -0.34 -11.38 12.50 -57.45 -0.72 -12.10 16 8 N -0.33 -11.58 3.88 -179.18 -0.70 -12.28 16 9 C 0.24 8.37 6.93 41.86 0.29 8.66 16 10 C -0.12 -3.91 9.71 71.24 0.69 -3.22 16 11 C -0.25 -8.25 5.64 -20.03 -0.11 -8.36 16 12 C 0.60 18.97 4.32 86.71 0.37 19.34 16 13 O -0.55 -19.36 17.03 -4.01 -0.07 -19.43 16 14 N -0.69 -20.84 4.36 -443.14 -1.93 -22.77 16 15 C 0.13 3.45 4.00 45.52 0.18 3.64 16 16 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 17 C -0.16 -4.66 7.62 31.12 0.24 -4.43 16 18 C 0.15 5.09 4.56 45.52 0.21 5.29 16 19 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 20 N -0.73 -33.16 5.01 -320.43 -1.61 -34.77 16 21 C -0.33 -17.06 9.97 84.03 0.84 -16.22 16 22 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 23 C -0.10 -5.48 5.50 84.86 0.47 -5.02 16 24 N -0.97 -57.92 13.70 21.65 0.30 -57.63 16 25 Si 1.13 50.71 29.92 68.60 2.05 52.76 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 29 C -0.16 -4.25 7.58 31.12 0.24 -4.01 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.80 7.13 -2.39 -0.02 1.78 16 33 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.25 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.09 3.19 8.12 -2.39 -0.02 3.17 16 37 H 0.08 3.01 7.10 -2.39 -0.02 2.99 16 38 H 0.40 13.45 7.76 -92.71 -0.72 12.73 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.36 16.95 5.16 -92.71 -0.48 16.47 16 42 H 0.24 14.27 6.77 -92.71 -0.63 13.64 16 43 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -72.13 370.48 2.18 -69.95 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: 0.00 Total: 46.24 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.72 Total: 7.20 kcal Atomic # 7 Polarization: -150.20 SS G_CDS: -6.52 Total: -156.71 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.43 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -72.13 2.18 -69.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022331138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.856 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds