Wall clock time and date at job start Tue Mar 31 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46956 * 270.00213 * 3 2 1 5 5 H 1.48501 * 109.47171 * 29.99957 * 3 2 1 6 6 H 1.48489 * 109.46973 * 150.00091 * 3 2 1 7 7 C 1.38808 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00561 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99765 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99905 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85666 * 336.20136 * 10 9 7 12 12 C 1.53781 * 113.69065 * 107.46754 * 10 9 7 13 13 C 1.53784 * 87.08322 * 139.98948 * 12 10 9 14 14 H 1.09000 * 113.68892 * 89.12910 * 13 12 10 15 15 N 1.46503 * 113.61556 * 220.02034 * 13 12 10 16 16 C 1.34780 * 119.99634 * 252.49665 * 15 13 12 17 17 O 1.21585 * 120.00077 * 0.02562 * 16 15 13 18 18 C 1.47603 * 119.99520 * 180.02562 * 16 15 13 19 19 C 1.39762 * 120.08209 * 0.02562 * 18 16 15 20 20 C 1.37638 * 119.94009 * 179.97438 * 19 18 16 21 21 C 1.39167 * 120.09642 * 0.03757 * 20 19 18 22 22 C 1.39156 * 120.08625 * 359.97438 * 21 20 19 23 23 C 1.37652 * 120.11657 * 359.97438 * 22 21 20 24 24 C 1.50691 * 119.81673 * 180.02562 * 22 21 20 25 25 C 1.53280 * 109.36941 * 325.88569 * 24 22 21 26 26 C 1.50491 * 109.68381 * 48.87290 * 25 24 22 27 27 O 1.21283 * 119.59904 * 144.70037 * 26 25 24 28 28 N 1.34526 * 120.80933 * 324.42157 * 26 25 24 29 29 C 1.53781 * 113.61484 * 205.00318 * 10 9 7 30 30 H 0.97003 * 119.99649 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99745 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.61480 * 25.44036 * 12 10 9 33 33 H 1.08995 * 113.61965 * 254.54176 * 12 10 9 34 34 H 0.96994 * 119.99781 * 72.49928 * 15 13 12 35 35 H 1.08005 * 120.03150 * 359.96774 * 19 18 16 36 36 H 1.08006 * 119.95236 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.03983 * 180.02562 * 23 22 21 38 38 H 1.08996 * 109.46854 * 86.07540 * 24 22 21 39 39 H 1.08998 * 109.46572 * 206.06446 * 24 22 21 40 40 H 1.08994 * 109.60256 * 288.73673 * 25 24 22 41 41 H 1.09007 * 109.39044 * 168.87172 * 25 24 22 42 42 H 0.96996 * 119.73227 * 181.02527 * 28 26 25 43 43 H 1.08996 * 113.61684 * 105.38926 * 29 10 9 44 44 H 1.08998 * 113.61466 * 334.48535 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.5279 -3.2970 0.4047 12 6 4.7865 -2.7950 -1.3445 13 6 5.9839 -3.3113 -0.5293 14 1 5.9128 -4.3670 -0.2674 15 7 7.2831 -2.9539 -1.1042 16 6 8.0400 -3.8981 -1.6977 17 8 7.6442 -5.0462 -1.7565 18 6 9.3492 -3.5381 -2.2765 19 6 9.8060 -2.2190 -2.2094 20 6 11.0276 -1.8866 -2.7495 21 6 11.8080 -2.8621 -3.3629 22 6 11.3556 -4.1763 -3.4313 23 6 10.1354 -4.5156 -2.8922 24 6 12.2059 -5.2277 -4.0964 25 6 12.9709 -4.5979 -5.2658 26 6 13.6374 -3.3279 -4.8103 27 8 14.7198 -3.0231 -5.2647 28 7 13.0449 -2.5237 -3.9093 29 6 5.5262 -2.3659 0.5939 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 5.0136 -1.9128 -1.9431 33 1 4.2769 -3.5733 -1.9125 34 1 7.5986 -2.0379 -1.0576 35 1 9.2009 -1.4609 -1.7343 36 1 11.3809 -0.8673 -2.6975 37 1 9.7857 -5.5361 -2.9457 38 1 12.9119 -5.6351 -3.3728 39 1 11.5674 -6.0278 -4.4709 40 1 12.2785 -4.3728 -6.0769 41 1 13.7281 -5.2969 -5.6213 42 1 13.4817 -1.7013 -3.6378 43 1 5.6136 -2.7977 1.5908 44 1 5.9556 -1.3664 0.5254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022396381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:33 Heat of formation + Delta-G solvation = -14.922618 kcal Electronic energy + Delta-G solvation = -26491.544897 eV Core-core repulsion = 22602.211600 eV Total energy + Delta-G solvation = -3889.333297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56342 -40.21337 -38.99725 -37.95907 -35.66376 -34.63543 -34.22392 -32.80613 -30.69391 -30.66051 -29.89139 -25.29717 -25.27119 -25.14236 -23.87237 -23.22978 -21.90444 -20.95927 -19.88816 -19.34492 -18.55334 -17.74816 -17.55798 -17.24143 -16.62057 -16.23759 -15.50086 -15.08482 -14.99166 -14.91405 -14.62765 -14.37913 -14.22269 -14.09454 -13.76863 -13.60909 -13.26473 -13.01037 -12.74282 -12.43991 -12.26141 -12.10261 -12.03083 -11.81418 -11.54243 -11.16813 -11.08068 -10.84554 -10.58460 -10.49988 -10.36573 -10.20614 -9.90381 -9.62877 -9.41499 -9.01225 -8.91272 -8.54977 -7.33118 -5.82819 -3.19142 0.29587 0.79913 1.87091 2.44360 2.65624 3.08576 3.31062 3.33428 3.40174 3.47249 3.77287 4.04804 4.10737 4.33395 4.50853 4.52602 4.54395 4.66085 4.75901 4.82303 4.92181 5.06372 5.15594 5.18562 5.21214 5.36093 5.36882 5.43371 5.53024 5.56892 5.68061 5.71814 5.86856 5.97755 6.05602 6.08464 6.14067 6.21408 6.32328 6.49476 6.56673 6.57852 6.89261 7.39570 7.46883 7.93237 8.13545 8.36572 9.13660 9.85893 10.05021 11.35251 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002066 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.065703 B =13552.671972 C =14339.714754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.089 0.911 12 C -0.176 4.176 13 C 0.119 3.881 14 H 0.114 0.886 15 N -0.710 5.710 16 C 0.558 3.442 17 O -0.540 6.540 18 C -0.151 4.151 19 C -0.054 4.054 20 C -0.158 4.158 21 C 0.181 3.819 22 C -0.134 4.134 23 C -0.022 4.022 24 C -0.077 4.077 25 C -0.139 4.139 26 C 0.522 3.478 27 O -0.526 6.526 28 N -0.662 5.662 29 C -0.162 4.162 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.412 0.588 43 H 0.071 0.929 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.161 -7.459 -6.642 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.107 0.893 12 C -0.218 4.218 13 C 0.014 3.986 14 H 0.132 0.868 15 N -0.360 5.360 16 C 0.345 3.655 17 O -0.419 6.419 18 C -0.155 4.155 19 C -0.073 4.073 20 C -0.179 4.179 21 C 0.084 3.916 22 C -0.137 4.137 23 C -0.041 4.041 24 C -0.114 4.114 25 C -0.179 4.179 26 C 0.311 3.689 27 O -0.401 6.401 28 N -0.306 5.306 29 C -0.202 4.202 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.251 0.749 43 H 0.090 0.910 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.155 -8.333 -7.020 30.190 hybrid contribution 0.817 2.320 0.146 2.464 sum 28.972 -6.013 -6.874 30.377 Atomic orbital electron populations 1.69705 1.05112 1.25893 1.57134 1.24709 0.95277 0.97277 1.01872 0.86540 0.79168 0.84995 0.77732 1.21086 1.21684 1.20366 1.19145 0.80583 0.94858 1.43328 0.89003 1.42697 1.04114 1.01779 1.88781 1.21330 0.89277 0.90358 0.92754 0.89324 1.24308 0.96172 1.00967 1.00363 1.22525 0.80626 1.00149 0.95297 0.86847 1.45970 1.20153 1.11632 1.58218 1.18142 0.83922 0.85349 0.78060 1.90778 1.73043 1.19568 1.58474 1.19980 0.96370 0.94406 1.04776 1.21151 0.94871 0.95303 0.95992 1.20701 0.95178 0.98768 1.03218 1.17813 0.85544 0.93205 0.94998 1.19459 0.97209 0.92574 1.04472 1.20965 0.91047 0.99951 0.92177 1.20515 0.98099 0.96561 0.96209 1.21795 1.01709 0.94443 0.99945 1.20855 0.84983 0.85503 0.77581 1.90798 1.20658 1.74033 1.54602 1.43588 1.19318 1.25707 1.41986 1.23898 0.99285 0.99077 0.97951 0.92988 0.80501 0.90299 0.91656 0.76730 0.84822 0.84672 0.83774 0.89597 0.88531 0.87517 0.87042 0.74933 0.91040 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.38 27.74 -169.99 -4.71 16.66 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.25 -6.82 10.45 -15.06 -0.16 -6.98 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.46 5.21 -52.64 -0.27 -16.74 16 10 C 0.17 3.11 4.48 -67.12 -0.30 2.81 16 11 H 0.09 1.62 8.10 -51.93 -0.42 1.19 16 12 C -0.18 -2.79 7.68 -25.92 -0.20 -2.99 16 13 C 0.12 1.58 4.24 -67.11 -0.28 1.30 16 14 H 0.11 1.60 7.46 -51.93 -0.39 1.21 16 15 N -0.71 -7.97 5.30 -54.03 -0.29 -8.25 16 16 C 0.56 6.86 7.76 -12.44 -0.10 6.76 16 17 O -0.54 -8.53 15.94 5.29 0.08 -8.45 16 18 C -0.15 -1.42 5.88 -104.95 -0.62 -2.03 16 19 C -0.05 -0.38 9.53 -39.23 -0.37 -0.75 16 20 C -0.16 -0.96 9.89 -39.46 -0.39 -1.35 16 21 C 0.18 1.22 6.51 -83.74 -0.54 0.67 16 22 C -0.13 -0.92 5.65 -104.50 -0.59 -1.51 16 23 C -0.02 -0.18 9.22 -39.23 -0.36 -0.55 16 24 C -0.08 -0.36 6.01 -27.74 -0.17 -0.53 16 25 C -0.14 -0.70 6.10 -27.84 -0.17 -0.87 16 26 C 0.52 4.12 7.71 -11.20 -0.09 4.03 16 27 O -0.53 -6.07 17.91 5.55 0.10 -5.97 16 28 N -0.66 -4.24 5.34 -9.98 -0.05 -4.29 16 29 C -0.16 -2.23 7.58 -25.92 -0.20 -2.43 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.36 7.88 5.79 -40.82 -0.24 7.65 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 3.44 6.75 -40.82 -0.28 3.16 16 35 H 0.13 0.69 6.39 -52.48 -0.34 0.35 16 36 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.14 1.20 7.64 -52.49 -0.40 0.80 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.32 8.06 -51.93 -0.42 -0.09 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.41 2.05 8.82 -40.82 -0.36 1.69 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -35.36 366.71 -9.28 -44.64 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.81 Total: 9.22 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.63 Total: -4.38 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.16 Total: -57.25 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.18 Total: -14.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.36 -9.28 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022396381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.716 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds