Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30241 * 126.16626 * 2 1 4 4 N 1.39836 * 110.08940 * 180.30316 * 3 2 1 5 5 C 1.46502 * 125.38804 * 179.78426 * 4 3 2 6 6 C 1.50693 * 109.47149 * 269.95631 * 5 4 3 7 7 O 1.21281 * 120.00448 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99985 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00250 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.84912 * 334.67199 * 9 8 6 11 11 C 1.53778 * 113.61329 * 105.86120 * 9 8 6 12 12 C 1.54054 * 86.98266 * 89.16744 * 11 9 8 13 13 H 1.09000 * 113.62067 * 139.98322 * 12 11 9 14 14 N 1.46502 * 113.68542 * 270.86949 * 12 11 9 15 15 C 1.36936 * 120.00377 * 252.52658 * 14 12 11 16 16 H 1.08004 * 119.99738 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00207 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00337 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99952 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46877 * 89.99498 * 19 17 15 21 21 H 1.48495 * 109.47242 * 209.99567 * 19 17 15 22 22 H 1.48494 * 109.47092 * 329.99676 * 19 17 15 23 23 C 1.53775 * 113.61703 * 203.47247 * 9 8 6 24 24 C 1.36827 * 109.22338 * 359.74514 * 4 3 2 25 25 N 1.32763 * 133.57416 * 179.97438 * 24 4 3 26 26 C 1.31510 * 121.46861 * 180.02562 * 25 24 4 27 27 C 1.38799 * 121.58913 * 359.97438 * 26 25 24 28 28 C 1.37012 * 119.65120 * 0.02562 * 27 26 25 29 29 C 1.39995 * 118.15603 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47102 * 270.08898 * 1 2 3 31 31 H 1.09003 * 109.47815 * 30.09415 * 1 2 3 32 32 H 1.09007 * 109.47061 * 150.10002 * 1 2 3 33 33 H 1.09003 * 109.46682 * 29.95675 * 5 4 3 34 34 H 1.09001 * 109.46842 * 149.95125 * 5 4 3 35 35 H 0.97001 * 119.99926 * 359.97438 * 8 6 5 36 36 H 1.09004 * 113.61750 * 203.66550 * 11 9 8 37 37 H 1.08999 * 113.61803 * 334.56958 * 11 9 8 38 38 H 0.97001 * 119.99460 * 72.53653 * 14 12 11 39 39 H 0.96999 * 119.99874 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.61633 * 25.43445 * 23 9 8 41 41 H 1.09001 * 113.61805 * 156.33416 * 23 9 8 42 42 H 1.07999 * 119.20318 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.17319 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.92584 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2756 1.0514 0.0000 4 7 3.6192 0.6642 -0.0069 5 6 4.7652 1.5769 -0.0135 6 6 5.1512 1.8883 -1.4365 7 8 4.5301 1.3967 -2.3548 8 7 6.1862 2.7140 -1.6887 9 6 6.5619 3.0163 -3.0720 10 1 6.2677 2.2335 -3.7712 11 6 6.1594 4.4297 -3.5247 12 6 7.5269 4.9008 -2.9943 13 1 8.0113 5.6406 -3.6317 14 7 7.5076 5.2917 -1.5825 15 6 7.5952 6.6139 -1.2368 16 1 7.6782 7.3685 -2.0050 17 6 7.5764 6.9842 0.1008 18 7 7.6612 8.2550 0.4331 19 14 7.4322 5.6790 1.4294 20 1 8.7894 5.2284 1.8300 21 1 6.7316 6.2481 2.6085 22 1 6.6613 4.5229 0.9059 23 6 8.0244 3.4649 -3.2292 24 6 3.6944 -0.7020 -0.0058 25 7 4.7050 -1.5629 -0.0108 26 6 4.5002 -2.8620 -0.0085 27 6 3.2191 -3.3961 -0.0003 28 6 2.1353 -2.5579 0.0051 29 6 2.3679 -1.1774 0.0027 30 1 -0.3633 0.0016 1.0277 31 1 -0.3635 0.8891 -0.5153 32 1 -0.3633 -0.8909 -0.5123 33 1 4.4973 2.5000 0.5007 34 1 5.6063 1.1077 0.4969 35 1 6.6824 3.1081 -0.9542 36 1 6.0526 4.5284 -4.6050 37 1 5.3117 4.8394 -2.9755 38 1 7.4328 4.6139 -0.8927 39 1 7.6477 8.5137 1.3679 40 1 8.6813 3.0960 -2.4415 41 1 8.4266 3.3002 -4.2288 42 1 5.3494 -3.5293 -0.0132 43 1 3.0773 -4.4667 0.0009 44 1 1.1295 -2.9512 0.0120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022471407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 115.146320 kcal Electronic energy + Delta-G solvation = -27732.562326 eV Core-core repulsion = 23881.161993 eV Total energy + Delta-G solvation = -3851.400334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77911 -40.04636 -38.47167 -37.92363 -34.48631 -33.81276 -32.85240 -32.02261 -30.68235 -30.35749 -29.84905 -26.55185 -25.27318 -24.54300 -24.05742 -23.06734 -22.28075 -20.59389 -20.03371 -19.34785 -17.76090 -17.70988 -17.33610 -17.22214 -16.40601 -15.77049 -15.40355 -15.19208 -14.91597 -14.49901 -14.42376 -13.94267 -13.67492 -13.63956 -13.52588 -13.45398 -12.92114 -12.82179 -12.80887 -12.47827 -12.31665 -12.23285 -11.96601 -11.92697 -11.06855 -11.02551 -11.00742 -10.76232 -10.41546 -10.30136 -9.95128 -9.82143 -9.66901 -9.66554 -9.13236 -9.03182 -8.79570 -8.40491 -7.42647 -5.88985 -3.26338 0.58653 1.08844 1.84307 2.24253 2.61858 3.11207 3.22854 3.25088 3.33444 3.59707 3.91469 4.05042 4.29577 4.43445 4.53308 4.63493 4.74818 4.88108 4.90727 5.00492 5.01611 5.08081 5.13351 5.22660 5.27749 5.34002 5.36328 5.48392 5.59254 5.62526 5.71779 5.89438 5.98163 6.04958 6.06535 6.13663 6.32697 6.40787 6.56091 6.59773 6.64227 6.90220 7.31724 7.56193 7.73502 7.87005 8.24904 8.30132 9.04971 9.76990 9.94679 11.29112 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003227 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.269694 B = 8675.189854 C = 9224.866088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.104 3.896 3 N -0.225 5.225 4 N -0.372 5.372 5 C 0.120 3.880 6 C 0.503 3.497 7 O -0.530 6.530 8 N -0.701 5.701 9 C 0.122 3.878 10 H 0.093 0.907 11 C -0.184 4.184 12 C 0.170 3.830 13 H 0.076 0.924 14 N -0.727 5.727 15 C -0.247 4.247 16 H 0.095 0.905 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.285 1.285 23 C -0.167 4.167 24 C 0.326 3.674 25 N -0.501 5.501 26 C 0.168 3.832 27 C -0.221 4.221 28 C 0.006 3.994 29 C -0.223 4.223 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.401 0.599 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.354 0.646 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.140 0.860 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 -23.909 -0.560 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 N -0.038 5.038 4 N -0.161 5.161 5 C -0.005 4.005 6 C 0.287 3.713 7 O -0.406 6.406 8 N -0.354 5.354 9 C 0.017 3.983 10 H 0.111 0.889 11 C -0.226 4.226 12 C 0.059 3.941 13 H 0.094 0.906 14 N -0.369 5.369 15 C -0.377 4.377 16 H 0.112 0.888 17 C -0.190 4.190 18 N -0.576 5.576 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.212 1.212 23 C -0.206 4.206 24 C 0.088 3.912 25 N -0.216 5.216 26 C -0.001 4.001 27 C -0.243 4.243 28 C -0.022 4.022 29 C -0.233 4.233 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.188 0.812 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.181 0.819 43 H 0.158 0.842 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.513 -22.134 -1.179 24.120 hybrid contribution -0.536 -1.685 1.375 2.240 sum -10.050 -23.819 0.195 25.853 Atomic orbital electron populations 1.20258 0.85247 1.04093 1.03541 1.23504 0.96795 0.88334 0.98806 1.76754 0.86044 1.22847 1.18132 1.47480 1.03698 1.01081 1.63802 1.21492 0.87014 0.95789 0.96231 1.20686 0.80480 0.78961 0.91155 1.90706 1.52107 1.51861 1.45941 1.45810 1.32982 1.47535 1.09114 1.21857 0.96302 0.97694 0.82486 0.88923 1.24296 1.02064 0.95663 1.00603 1.21206 0.93122 0.93113 0.86691 0.90558 1.42574 1.88433 1.05374 1.00525 1.19113 1.43047 0.82449 0.93098 0.88756 1.24694 1.01835 0.95716 0.96718 1.69683 1.56724 1.14145 1.17001 0.86614 0.77778 0.81259 0.82885 1.20733 1.21344 1.21160 1.23873 0.94984 0.99247 1.02517 1.18943 0.90450 0.85948 0.95883 1.66740 1.33662 1.03173 1.17988 1.22726 0.96969 0.89363 0.91068 1.21611 0.93355 1.01182 1.08186 1.20732 0.99907 0.90112 0.91494 1.20365 0.93560 0.94934 1.14395 0.89780 0.89938 0.89969 0.85526 0.85689 0.76145 0.89949 0.90913 0.81231 0.92853 0.91088 0.88592 0.81854 0.84192 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.48 36.00 0.38 -0.19 16 2 C 0.10 1.33 7.44 -80.22 -0.60 0.74 16 3 N -0.22 -3.57 12.40 34.82 0.43 -3.14 16 4 N -0.37 -6.03 3.13 -61.60 -0.19 -6.22 16 5 C 0.12 1.82 6.89 -5.20 -0.04 1.78 16 6 C 0.50 8.80 7.90 -10.99 -0.09 8.71 16 7 O -0.53 -10.98 16.05 5.56 0.09 -10.89 16 8 N -0.70 -11.70 5.12 -53.02 -0.27 -11.98 16 9 C 0.12 1.98 4.29 -67.12 -0.29 1.69 16 10 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16 11 C -0.18 -3.18 7.70 -25.78 -0.20 -3.38 16 12 C 0.17 3.13 4.57 -66.98 -0.31 2.83 16 13 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 14 N -0.73 -16.21 4.99 -52.50 -0.26 -16.47 16 15 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 16 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 17 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 18 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 19 Si 0.88 20.84 27.74 -169.99 -4.71 16.13 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -5.93 6.30 56.52 0.36 -5.57 16 23 C -0.17 -2.48 7.58 -25.92 -0.20 -2.68 16 24 C 0.33 5.00 7.97 -156.11 -1.24 3.75 16 25 N -0.50 -7.05 10.40 -12.34 -0.13 -7.18 16 26 C 0.17 1.67 11.15 -17.48 -0.19 1.48 16 27 C -0.22 -1.79 10.04 -39.82 -0.40 -2.19 16 28 C 0.01 0.05 10.18 -39.37 -0.40 -0.35 16 29 C -0.22 -2.86 6.35 -105.18 -0.67 -3.53 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.40 6.64 5.95 -40.82 -0.24 6.39 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.35 7.51 3.22 -40.82 -0.13 7.38 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -36.33 371.36 -9.03 -45.36 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.86 Total: 14.49 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -4.49 Total: 1.90 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: 0.35 Total: -72.58 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.33 -9.03 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022471407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.506 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds