Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39967 * 119.94694 * 2 1 4 4 C 1.35759 * 119.35551 * 179.64481 * 3 2 1 5 5 C 1.50701 * 120.42212 * 179.91651 * 4 3 2 6 6 N 1.36318 * 119.15354 * 0.55753 * 4 3 2 7 7 N 1.39912 * 132.16540 * 179.32773 * 6 4 3 8 8 C 1.30691 * 109.52145 * 180.02562 * 7 6 4 9 9 C 1.40642 * 108.72863 * 0.02562 * 8 7 6 10 10 C 1.46579 * 126.54207 * 179.97438 * 9 8 7 11 11 O 1.21713 * 120.00447 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99922 * 0.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72944 * 12 10 9 14 14 H 1.09002 * 112.85607 * 23.79935 * 13 12 10 15 15 C 1.53780 * 113.61595 * 155.00126 * 13 12 10 16 16 C 1.53775 * 87.08348 * 139.97813 * 15 13 12 17 17 H 1.08997 * 113.61474 * 89.20348 * 16 15 13 18 18 N 1.46504 * 113.61256 * 220.01762 * 16 15 13 19 19 C 1.36943 * 119.99895 * 204.99720 * 18 16 15 20 20 H 1.07993 * 120.00000 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99607 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99766 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47081 * 89.99689 * 23 21 19 25 25 H 1.48497 * 109.47010 * 209.99754 * 23 21 19 26 26 H 1.48500 * 109.46764 * 329.99777 * 23 21 19 27 27 C 1.53780 * 87.08246 * 334.56537 * 16 15 13 28 28 C 1.36599 * 119.72939 * 359.61244 * 6 4 3 29 29 N 1.31500 * 119.94814 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46788 * 269.97360 * 1 2 3 31 31 H 1.09001 * 109.47672 * 29.97332 * 1 2 3 32 32 H 1.09002 * 109.47496 * 149.97979 * 1 2 3 33 33 H 1.07992 * 120.32375 * 0.02913 * 3 2 1 34 34 H 1.09004 * 109.46395 * 270.65360 * 5 4 3 35 35 H 1.09000 * 109.47067 * 30.65053 * 5 4 3 36 36 H 1.08996 * 109.46997 * 150.65552 * 5 4 3 37 37 H 1.08000 * 125.63786 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 39 39 H 1.08998 * 113.61665 * 254.52827 * 15 13 12 40 40 H 1.09005 * 113.61224 * 25.42365 * 15 13 12 41 41 H 0.96995 * 119.99894 * 25.00156 * 18 16 15 42 42 H 0.97002 * 119.99908 * 179.97438 * 22 21 19 43 43 H 1.08997 * 113.61797 * 270.88346 * 27 16 15 44 44 H 1.09002 * 113.61111 * 139.98002 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2128 0.0000 4 6 3.5632 1.1988 0.0073 5 6 4.3396 2.4904 0.0056 6 7 4.2150 0.0015 0.0030 7 7 5.5748 -0.3275 -0.0040 8 6 5.7096 -1.6274 -0.0065 9 6 4.4314 -2.2140 -0.0019 10 6 4.1293 -3.6483 -0.0033 11 8 2.9725 -4.0267 0.0007 12 7 5.1326 -4.5483 -0.0090 13 6 4.8308 -5.9818 -0.0044 14 1 3.8413 -6.2074 -0.4022 15 6 5.9491 -6.8488 -0.6064 16 6 5.6686 -7.8553 0.5218 17 1 4.9091 -8.5949 0.2683 18 7 6.8796 -8.4546 1.0881 19 6 6.8173 -9.6806 1.6951 20 1 5.8757 -10.2058 1.7560 21 6 7.9647 -10.2481 2.2321 22 7 9.1124 -9.6082 2.1575 23 14 7.8800 -11.9208 3.0595 24 1 8.1247 -12.9842 2.0523 25 1 8.9128 -11.9996 4.1235 26 1 6.5349 -12.1082 3.6604 27 6 5.1282 -6.6696 1.3385 28 6 3.4970 -1.1606 -0.0007 29 7 2.1634 -1.1394 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6701 2.1506 0.0005 34 1 4.5223 2.8030 -1.0225 35 1 3.7664 3.2596 0.5230 36 1 5.2918 2.3425 0.5150 37 1 6.6476 -2.1628 -0.0113 38 1 6.0546 -4.2467 -0.0118 39 1 5.7178 -7.2315 -1.6004 40 1 6.9364 -6.3906 -0.5474 41 1 7.7254 -7.9830 1.0332 42 1 9.9140 -10.0047 2.5331 43 1 5.8911 -6.1625 1.9293 44 1 4.2341 -6.9077 1.9147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022525244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = 110.679591 kcal Electronic energy + Delta-G solvation = -26719.020195 eV Core-core repulsion = 22867.426169 eV Total energy + Delta-G solvation = -3851.594026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81096 -39.60666 -38.67229 -37.58309 -35.43086 -33.95562 -32.84262 -32.39092 -30.69215 -29.75819 -28.85875 -28.21307 -25.02239 -24.91427 -23.86186 -23.16375 -22.20031 -21.51350 -20.00685 -19.22687 -18.64624 -17.58484 -17.15321 -16.71310 -16.65298 -15.91757 -15.40483 -14.66622 -14.49961 -14.40032 -14.36781 -14.20842 -13.92554 -13.76852 -13.76238 -13.45737 -12.99096 -12.90113 -12.73381 -12.64315 -12.18532 -12.02479 -11.83110 -11.79615 -11.21068 -11.15426 -10.87365 -10.53361 -10.42490 -10.22775 -10.11420 -9.98162 -9.86500 -9.63688 -9.47219 -8.85368 -8.61804 -8.18607 -6.93147 -5.76126 -3.04396 0.02658 0.41299 1.54451 1.91019 2.82026 3.35056 3.35552 3.45526 3.50931 3.52591 3.62618 3.64387 3.83386 4.31281 4.52188 4.62242 4.64856 4.69807 4.78420 4.80567 4.93021 5.09387 5.10383 5.14646 5.24005 5.34212 5.39125 5.44290 5.50468 5.54540 5.72654 5.89615 5.95023 6.04092 6.09156 6.25253 6.34324 6.41105 6.65797 6.72135 6.88537 6.97211 7.17947 7.34164 7.73237 7.86409 8.42661 8.59187 9.53943 10.11462 10.46117 11.46382 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.002088 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.637447 B =13404.527982 C =14059.413014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.211 3.789 3 C -0.228 4.228 4 C 0.198 3.802 5 C -0.119 4.119 6 N -0.311 5.311 7 N -0.313 5.313 8 C 0.130 3.870 9 C -0.288 4.288 10 C 0.594 3.406 11 O -0.535 6.535 12 N -0.714 5.714 13 C 0.123 3.877 14 H 0.109 0.891 15 C -0.158 4.158 16 C 0.168 3.832 17 H 0.079 0.921 18 N -0.711 5.711 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C -0.176 4.176 28 C 0.327 3.673 29 N -0.448 5.448 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.206 0.794 38 H 0.395 0.605 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.079 0.921 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.305 29.261 -6.873 32.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.049 3.951 3 C -0.252 4.252 4 C 0.081 3.919 5 C -0.176 4.176 6 N -0.081 5.081 7 N -0.134 5.134 8 C -0.052 4.052 9 C -0.305 4.305 10 C 0.381 3.619 11 O -0.412 6.412 12 N -0.364 5.364 13 C 0.018 3.982 14 H 0.127 0.873 15 C -0.198 4.198 16 C 0.055 3.945 17 H 0.097 0.903 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.218 4.218 28 C 0.095 3.905 29 N -0.161 5.161 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.186 0.814 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.709 28.935 -6.789 32.730 hybrid contribution 0.926 -0.528 0.548 1.198 sum -12.783 28.407 -6.241 31.770 Atomic orbital electron populations 1.20856 0.86678 1.04701 1.04325 1.22116 0.98255 0.87253 0.87437 1.21589 0.91538 1.01414 1.10625 1.20822 0.92005 0.86346 0.92689 1.21018 1.01076 0.90675 1.04823 1.47023 1.07752 1.05940 1.47341 1.77525 0.88838 1.15851 1.31217 1.24185 0.98397 0.90654 0.91926 1.19517 0.90434 0.93451 1.27067 1.16772 0.85352 0.83544 0.76268 1.90818 1.19728 1.80487 1.50169 1.45766 1.08564 1.06438 1.75605 1.22437 0.99660 0.77315 0.98771 0.87278 1.23860 0.98092 0.98041 0.99851 1.21362 0.90785 0.91156 0.91161 0.90258 1.42359 1.05416 1.20258 1.66821 1.19327 0.94466 0.94610 1.28860 0.90993 1.24761 0.95554 0.98899 1.01806 1.69657 0.98776 1.38683 1.51075 0.86180 0.77029 0.84047 0.78894 1.21712 1.21815 1.20703 1.24327 1.01143 0.99792 0.96567 1.20387 0.87867 0.86023 0.96180 1.68176 1.03640 1.28149 1.16096 0.88935 0.89576 0.89164 0.81382 0.88686 0.88566 0.89085 0.77770 0.77117 0.91557 0.90015 0.78117 0.93518 0.90260 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.19 36.00 0.37 -0.19 16 2 C 0.21 1.88 6.83 -82.09 -0.56 1.32 16 3 C -0.23 -1.40 9.38 -39.82 -0.37 -1.77 16 4 C 0.20 1.56 6.85 -81.49 -0.56 1.00 16 5 C -0.12 -0.49 10.08 36.01 0.36 -0.13 16 6 N -0.31 -3.65 3.86 -8.26 -0.03 -3.68 16 7 N -0.31 -3.70 12.39 30.76 0.38 -3.32 16 8 C 0.13 1.47 11.44 -17.13 -0.20 1.27 16 9 C -0.29 -4.16 6.17 -104.66 -0.65 -4.81 16 10 C 0.59 9.82 7.78 -12.89 -0.10 9.72 16 11 O -0.53 -10.84 16.33 5.18 0.08 -10.76 16 12 N -0.71 -10.31 5.34 -54.35 -0.29 -10.60 16 13 C 0.12 1.98 4.24 -67.12 -0.28 1.70 16 14 H 0.11 1.86 7.46 -51.93 -0.39 1.47 16 15 C -0.16 -2.59 7.58 -25.92 -0.20 -2.79 16 16 C 0.17 3.37 4.48 -67.12 -0.30 3.07 16 17 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 18 N -0.71 -17.82 5.40 -52.64 -0.28 -18.10 16 19 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 28 C 0.33 4.69 7.74 -155.83 -1.21 3.49 16 29 N -0.45 -6.18 10.18 -8.25 -0.08 -6.26 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.18 8.09 -51.93 -0.42 -0.24 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.17 0.29 8.06 -52.49 -0.42 -0.13 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.13 8.09 -51.93 -0.42 -0.29 16 36 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.21 1.50 7.46 -52.49 -0.39 1.11 16 38 H 0.39 4.57 7.65 -40.82 -0.31 4.26 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.38 10.12 7.92 -40.82 -0.32 9.80 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -37.94 377.39 -9.00 -46.94 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.02 Total: 9.01 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -4.14 Total: 1.02 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: 0.42 Total: -69.44 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.94 -9.00 -46.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022525244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.620 kcal (2) G-P(sol) polarization free energy of solvation -37.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds