Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38700 * 119.16588 * 2 1 4 4 C 1.39286 * 119.36284 * 180.02562 * 3 2 1 5 5 C 1.47872 * 121.09112 * 180.02562 * 4 3 2 6 6 O 1.21549 * 120.00341 * 179.97438 * 5 4 3 7 7 N 1.34776 * 119.99827 * 359.97438 * 5 4 3 8 8 C 1.46506 * 120.00427 * 180.02562 * 7 5 4 9 9 H 1.09001 * 112.84337 * 336.19567 * 8 7 5 10 10 C 1.53776 * 113.68961 * 107.46235 * 8 7 5 11 11 C 1.53782 * 87.07843 * 139.99557 * 10 8 7 12 12 H 1.09002 * 113.68831 * 89.12499 * 11 10 8 13 13 N 1.46497 * 113.61673 * 220.01722 * 11 10 8 14 14 C 1.36935 * 120.00298 * 252.49785 * 13 11 10 15 15 H 1.08003 * 119.99995 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00267 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00268 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00531 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00628 * 18 16 14 22 22 C 1.53777 * 113.61601 * 205.00203 * 8 7 5 23 23 C 1.41274 * 117.82188 * 0.27210 * 4 3 2 24 24 C 1.41108 * 133.90808 * 179.73261 * 23 4 3 25 25 N 1.30249 * 108.58141 * 179.97438 * 24 23 4 26 26 N 1.39990 * 109.75184 * 359.43302 * 25 24 23 27 27 C 1.46502 * 125.90787 * 179.97438 * 26 25 24 28 28 C 1.37078 * 108.18357 * 0.66556 * 26 25 24 29 29 N 1.31451 * 119.16369 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47514 * 90.00067 * 1 2 3 31 31 H 1.09006 * 109.47421 * 210.00064 * 1 2 3 32 32 H 1.09003 * 109.47172 * 329.99889 * 1 2 3 33 33 H 1.08002 * 120.31588 * 359.97438 * 3 2 1 34 34 H 0.97005 * 120.00252 * 359.97438 * 7 5 4 35 35 H 1.08993 * 113.61686 * 25.45017 * 10 8 7 36 36 H 1.09001 * 113.61451 * 254.53803 * 10 8 7 37 37 H 0.96992 * 120.00013 * 72.49684 * 13 11 10 38 38 H 0.97000 * 119.99327 * 359.97438 * 17 16 14 39 39 H 1.09007 * 113.61344 * 105.38723 * 22 8 7 40 40 H 1.09000 * 113.69344 * 334.49333 * 22 8 7 41 41 H 1.08001 * 125.71424 * 359.97438 * 24 23 4 42 42 H 1.09006 * 109.47243 * 270.84879 * 27 26 25 43 43 H 1.08996 * 109.46935 * 30.84983 * 27 26 25 44 44 H 1.08998 * 109.47237 * 150.85494 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5758 1.2159 -0.0005 5 6 4.3350 2.4848 0.0000 6 8 5.5504 2.4659 0.0000 7 7 3.6794 3.6624 0.0005 8 6 4.4315 4.9197 0.0005 9 1 5.4376 4.8109 0.4055 10 6 4.3855 5.6671 -1.3426 11 6 4.2547 6.9640 -0.5267 12 1 5.2119 7.4154 -0.2653 13 7 3.3101 7.9256 -1.1004 14 6 3.7736 9.0644 -1.7033 15 1 4.8356 9.2539 -1.7554 16 6 2.8785 9.9753 -2.2473 17 7 1.5843 9.7447 -2.1834 18 14 3.5108 11.5291 -3.0691 19 1 4.3885 11.1636 -4.2099 20 1 2.3622 12.3296 -3.5644 21 1 4.2842 12.3294 -2.0860 22 6 3.6522 6.1037 0.5966 23 6 4.2394 -0.0312 -0.0070 24 6 5.5966 -0.4175 -0.0142 25 7 5.6578 -1.7186 -0.0176 26 7 4.3641 -2.2531 0.0002 27 6 4.0230 -3.6778 0.0020 28 6 3.4714 -1.2128 0.0000 29 7 2.1476 -1.1479 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6345 2.1415 -0.0004 34 1 2.7095 3.6775 0.0002 35 1 3.5039 5.4367 -1.9406 36 1 5.3131 5.6008 -1.9112 37 1 2.3563 7.7556 -1.0532 38 1 1.2560 8.9380 -1.7563 39 1 3.9877 6.3898 1.5935 40 1 2.5698 5.9939 0.5296 41 1 6.4430 0.2533 -0.0166 42 1 3.9381 -4.0324 -1.0253 43 1 4.8041 -4.2377 0.5162 44 1 3.0730 -3.8234 0.5162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022895654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = 106.561981 kcal Electronic energy + Delta-G solvation = -26897.060337 eV Core-core repulsion = 23045.287758 eV Total energy + Delta-G solvation = -3851.772579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14323 -40.05461 -38.73254 -38.03688 -34.47190 -34.24116 -33.22124 -32.27208 -31.83925 -29.63175 -27.87722 -27.15175 -25.28039 -25.27777 -23.90767 -22.87891 -22.15588 -21.43456 -20.52219 -19.40651 -18.01866 -17.60993 -17.42650 -17.30704 -16.29228 -16.06594 -15.26015 -15.05972 -14.83177 -14.76845 -14.42831 -14.34931 -13.99322 -13.77814 -13.64819 -13.26303 -13.19433 -12.98805 -12.83085 -12.56688 -12.37816 -12.11074 -12.07906 -11.34318 -11.10551 -10.93935 -10.83897 -10.75692 -10.55970 -10.41989 -10.29861 -9.99265 -9.72849 -9.21808 -9.16047 -9.00197 -8.90284 -8.69161 -7.10784 -6.16823 -3.17294 0.00459 0.75806 1.79415 2.13206 2.66451 2.91383 3.46629 3.49728 3.52687 3.66419 3.70081 4.03697 4.14105 4.35635 4.45725 4.63835 4.69164 4.85159 4.88281 4.97832 5.02325 5.07215 5.10991 5.14092 5.20598 5.21698 5.26115 5.42872 5.50005 5.55390 5.70213 5.76736 5.88144 5.96255 6.08568 6.12904 6.15389 6.29231 6.45097 6.48432 6.56668 6.90208 7.09216 7.37861 7.50540 7.75929 8.00604 8.68894 9.14477 10.00911 10.15038 11.31158 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.002226 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.081458 B =12576.109980 C =13384.918788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.197 3.803 3 C -0.181 4.181 4 C 0.001 3.999 5 C 0.555 3.445 6 O -0.527 6.527 7 N -0.701 5.701 8 C 0.118 3.882 9 H 0.114 0.886 10 C -0.176 4.176 11 C 0.175 3.825 12 H 0.082 0.918 13 N -0.721 5.721 14 C -0.336 4.336 15 H 0.067 0.933 16 C -0.044 4.044 17 N -0.942 5.942 18 Si 1.080 2.920 19 H -0.295 1.295 20 H -0.285 1.285 21 H -0.294 1.294 22 C -0.160 4.160 23 C -0.187 4.187 24 C 0.100 3.900 25 N -0.243 5.243 26 N -0.394 5.394 27 C 0.114 3.886 28 C 0.313 3.687 29 N -0.492 5.492 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.368 0.632 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.207 0.793 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -24.780 6.986 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.047 3.953 3 C -0.203 4.203 4 C -0.013 4.013 5 C 0.341 3.659 6 O -0.404 6.404 7 N -0.352 5.352 8 C 0.014 3.986 9 H 0.132 0.868 10 C -0.218 4.218 11 C 0.062 3.938 12 H 0.100 0.900 13 N -0.360 5.360 14 C -0.467 4.467 15 H 0.085 0.915 16 C -0.242 4.242 17 N -0.587 5.587 18 Si 0.910 3.090 19 H -0.222 1.222 20 H -0.210 1.210 21 H -0.222 1.222 22 C -0.200 4.200 23 C -0.198 4.198 24 C -0.095 4.095 25 N -0.056 5.056 26 N -0.185 5.185 27 C -0.027 4.027 28 C 0.073 3.927 29 N -0.208 5.208 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.236 0.764 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.202 0.798 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.224 0.776 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.662 -25.319 6.169 26.068 hybrid contribution -0.356 -0.255 0.721 0.844 sum 0.306 -25.574 6.890 26.488 Atomic orbital electron populations 1.20839 0.87449 1.04222 1.03923 1.21152 0.96881 0.86379 0.90839 1.21998 0.93101 0.99923 1.05297 1.19940 0.93199 0.92317 0.95889 1.18049 0.87366 0.83313 0.77173 1.90742 1.13130 1.87307 1.49233 1.45975 1.10332 1.05501 1.73355 1.22582 0.96711 0.80064 0.99265 0.86831 1.24342 1.02033 0.99084 0.96355 1.21282 0.94183 0.87490 0.90848 0.89985 1.42353 1.03881 1.21928 1.67868 1.20105 0.93888 0.98942 1.33775 0.91538 1.25809 0.94495 1.03085 1.00780 1.70905 1.12648 1.28414 1.46742 0.83241 0.74713 0.75207 0.75790 1.22187 1.21027 1.22177 1.23892 1.00306 0.95556 1.00246 1.19274 0.95007 0.93045 1.12499 1.24125 0.96849 0.91672 0.96845 1.76967 0.98562 1.10934 1.19177 1.48352 1.01114 1.05357 1.63631 1.21807 1.02411 0.75155 1.03310 1.18919 0.88779 0.87493 0.97543 1.66254 1.06330 1.30256 1.17947 0.89501 0.89996 0.89698 0.83515 0.76424 0.90270 0.91937 0.79833 0.93456 0.91219 0.90057 0.77608 0.91042 0.89266 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.14 36.01 0.37 -0.24 16 2 C 0.20 1.83 6.78 -82.58 -0.56 1.27 16 3 C -0.18 -1.67 9.22 -39.02 -0.36 -2.03 16 4 C 0.00 0.01 5.93 -104.41 -0.62 -0.61 16 5 C 0.56 7.38 7.79 -12.32 -0.10 7.28 16 6 O -0.53 -8.39 14.74 5.32 0.08 -8.32 16 7 N -0.70 -8.36 5.32 -53.95 -0.29 -8.65 16 8 C 0.12 1.64 4.24 -67.12 -0.28 1.36 16 9 H 0.11 1.64 7.46 -51.93 -0.39 1.25 16 10 C -0.18 -2.93 7.68 -25.92 -0.20 -3.13 16 11 C 0.17 3.27 4.48 -67.12 -0.30 2.97 16 12 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 13 N -0.72 -17.22 5.40 -52.64 -0.28 -17.50 16 14 C -0.34 -9.20 9.97 -15.06 -0.15 -9.35 16 15 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 16 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 17 N -0.94 -28.38 13.70 55.49 0.76 -27.62 16 18 Si 1.08 25.43 29.92 -169.99 -5.09 20.34 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.16 -2.34 7.58 -25.92 -0.20 -2.53 16 23 C -0.19 -2.43 6.02 -106.64 -0.64 -3.07 16 24 C 0.10 1.27 11.29 -17.13 -0.19 1.08 16 25 N -0.24 -3.06 12.44 30.79 0.38 -2.67 16 26 N -0.39 -4.55 4.07 -67.19 -0.27 -4.82 16 27 C 0.11 0.81 11.48 59.85 0.69 1.50 16 28 C 0.31 3.92 8.00 -156.06 -1.25 2.67 16 29 N -0.49 -5.58 10.25 -8.59 -0.09 -5.66 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.15 0.93 6.52 -52.49 -0.34 0.59 16 34 H 0.40 3.77 6.87 -40.82 -0.28 3.49 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.37 8.95 6.75 -40.82 -0.28 8.68 16 38 H 0.25 7.47 6.77 -40.82 -0.28 7.19 16 39 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 40 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.21 2.41 7.08 -52.49 -0.37 2.03 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -34.77 371.95 -8.87 -43.64 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.78 Total: 9.85 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.89 Total: -4.19 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: 0.21 Total: -66.93 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.77 -8.87 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022895654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.202 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds