Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38506 * 125.47910 * 2 1 4 4 C 1.39067 * 107.66558 * 180.02562 * 3 2 1 5 5 N 1.33702 * 132.56091 * 179.36851 * 4 3 2 6 6 C 1.31143 * 121.18741 * 180.02562 * 5 4 3 7 7 C 1.50708 * 119.76648 * 179.97438 * 6 5 4 8 8 C 1.40133 * 120.46280 * 0.02562 * 6 5 4 9 9 C 1.36887 * 119.25986 * 359.97438 * 8 6 5 10 10 C 1.47497 * 120.61013 * 179.97438 * 9 8 6 11 11 O 1.21590 * 120.00116 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99955 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99906 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.84823 * 336.19884 * 13 12 10 15 15 C 1.53777 * 113.68707 * 107.47024 * 13 12 10 16 16 C 1.53781 * 87.08048 * 139.99173 * 15 13 12 17 17 H 1.08996 * 113.69517 * 89.12235 * 16 15 13 18 18 N 1.46499 * 113.61516 * 220.01918 * 16 15 13 19 19 C 1.36939 * 119.99547 * 252.49642 * 18 16 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53775 * 113.61200 * 205.00488 * 13 12 10 28 28 N 1.37289 * 106.80453 * 359.61269 * 4 3 2 29 29 N 1.31527 * 125.48008 * 179.47702 * 2 1 3 30 30 H 1.08999 * 109.46694 * 270.50180 * 1 2 3 31 31 H 1.09002 * 109.47191 * 30.50110 * 1 2 3 32 32 H 1.08995 * 109.46976 * 150.49889 * 1 2 3 33 33 H 1.07999 * 126.17050 * 359.47649 * 3 2 1 34 34 H 1.09003 * 109.46659 * 270.02081 * 7 6 5 35 35 H 1.09005 * 109.47035 * 30.01405 * 7 6 5 36 36 H 1.08998 * 109.46934 * 150.01767 * 7 6 5 37 37 H 1.08001 * 120.36691 * 179.97438 * 8 6 5 38 38 H 0.96998 * 119.99720 * 0.02562 * 12 10 9 39 39 H 1.09001 * 113.61887 * 25.44078 * 15 13 12 40 40 H 1.09001 * 113.61059 * 254.53429 * 15 13 12 41 41 H 0.96998 * 120.00185 * 72.49025 * 18 16 15 42 42 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 43 43 H 1.08997 * 113.61845 * 105.38638 * 27 13 12 44 44 H 1.09005 * 113.69458 * 334.49301 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3110 1.1279 0.0000 4 6 3.6349 0.7025 -0.0006 5 7 4.7972 1.3633 -0.0117 6 6 5.9421 0.7238 -0.0099 7 6 7.2332 1.5010 -0.0233 8 6 5.9733 -0.6771 0.0032 9 6 4.7943 -1.3725 0.0147 10 6 4.7924 -2.8474 0.0281 11 8 5.8446 -3.4568 0.0295 12 7 3.6243 -3.5198 0.0399 13 6 3.6225 -4.9847 0.0538 14 1 4.5391 -5.4130 -0.3518 15 6 3.2051 -5.5892 1.4048 16 6 2.4216 -6.6416 0.6027 17 1 3.0087 -7.5236 0.3466 18 7 1.1197 -6.9746 1.1861 19 6 0.9343 -8.1838 1.8015 20 1 1.7476 -8.8922 1.8563 21 6 -0.2991 -8.4990 2.3548 22 7 -1.2903 -7.6355 2.2884 23 14 -0.5523 -10.1488 3.1935 24 1 -1.0237 -11.1437 2.1969 25 1 -1.5664 -10.0069 4.2691 26 1 0.7319 -10.6075 3.7815 27 6 2.3420 -5.6046 -0.5300 28 7 3.6108 -0.6702 0.0079 29 7 2.2705 -1.0710 0.0098 30 1 -0.3633 0.0090 1.0276 31 1 -0.3634 0.8855 -0.5216 32 1 -0.3633 -0.8944 -0.5060 33 1 1.9710 2.1529 -0.0080 34 1 7.5400 1.6781 -1.0541 35 1 7.0877 2.4560 0.4817 36 1 8.0057 0.9310 0.4929 37 1 6.9171 -1.2022 0.0042 38 1 2.7850 -3.0336 0.0392 39 1 2.5707 -4.9323 1.9998 40 1 4.0375 -6.0042 1.9731 41 1 0.3891 -6.3385 1.1367 42 1 -1.1589 -6.7790 1.8526 43 1 2.4774 -6.0319 -1.5236 44 1 1.4707 -4.9528 -0.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023105348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = 115.732964 kcal Electronic energy + Delta-G solvation = -27378.449052 eV Core-core repulsion = 23527.074157 eV Total energy + Delta-G solvation = -3851.374895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74137 -40.10538 -38.88269 -38.07261 -34.87247 -34.34224 -32.97734 -32.82899 -30.79820 -29.66812 -28.82324 -27.83868 -25.76242 -25.26218 -23.88798 -22.87167 -22.30806 -20.96892 -20.84016 -19.50003 -18.76909 -17.53013 -17.27609 -16.87570 -16.67202 -16.26712 -15.42814 -15.11269 -14.88717 -14.72541 -14.40591 -14.17086 -13.84996 -13.66546 -13.58487 -13.43954 -13.30861 -13.03888 -12.86009 -12.60581 -12.39975 -12.04901 -12.04222 -11.49264 -11.32869 -11.06827 -10.93358 -10.79847 -10.55892 -10.50005 -10.33837 -10.08434 -10.00099 -9.62751 -9.20504 -9.00959 -8.89498 -8.29501 -7.08624 -6.15037 -3.15304 -0.26694 0.43145 1.53734 2.03232 2.56572 2.72886 3.07880 3.28495 3.50167 3.54825 3.62222 3.68849 4.02784 4.34265 4.50562 4.64739 4.71119 4.80525 4.88959 5.03694 5.06823 5.08375 5.16188 5.16657 5.23832 5.33167 5.34494 5.43965 5.44902 5.60294 5.69376 5.70442 5.78226 5.93742 6.03560 6.11817 6.17249 6.20231 6.29927 6.47520 6.56005 6.89813 7.03901 7.18981 7.39650 7.77901 7.90909 8.70844 9.16601 10.03044 10.17638 11.33116 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.002711 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.261727 B =10324.806715 C =11593.961390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.126 3.874 3 C -0.256 4.256 4 C 0.264 3.736 5 N -0.453 5.453 6 C 0.202 3.798 7 C -0.106 4.106 8 C -0.154 4.154 9 C 0.149 3.851 10 C 0.555 3.445 11 O -0.522 6.522 12 N -0.688 5.688 13 C 0.113 3.887 14 H 0.114 0.886 15 C -0.175 4.175 16 C 0.177 3.823 17 H 0.083 0.917 18 N -0.721 5.721 19 C -0.336 4.336 20 H 0.067 0.933 21 C -0.044 4.044 22 N -0.943 5.943 23 Si 1.083 2.917 24 H -0.295 1.295 25 H -0.288 1.288 26 H -0.294 1.294 27 C -0.159 4.159 28 N -0.307 5.307 29 N -0.319 5.319 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.180 0.820 38 H 0.417 0.583 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.369 0.631 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.265 21.195 -7.164 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.286 4.286 4 C 0.036 3.964 5 N -0.167 5.167 6 C 0.037 3.963 7 C -0.163 4.163 8 C -0.179 4.179 9 C 0.031 3.969 10 C 0.338 3.662 11 O -0.398 6.398 12 N -0.342 5.342 13 C 0.008 3.992 14 H 0.132 0.868 15 C -0.217 4.217 16 C 0.064 3.936 17 H 0.101 0.899 18 N -0.360 5.360 19 C -0.467 4.467 20 H 0.085 0.915 21 C -0.242 4.242 22 N -0.588 5.588 23 Si 0.914 3.086 24 H -0.222 1.222 25 H -0.214 1.214 26 H -0.221 1.221 27 C -0.199 4.199 28 N -0.080 5.080 29 N -0.146 5.146 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.198 0.802 38 H 0.259 0.741 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.202 0.798 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.646 19.171 -6.322 23.821 hybrid contribution 0.649 1.521 -0.789 1.833 sum 13.295 20.693 -7.111 25.603 Atomic orbital electron populations 1.20379 0.84993 1.04317 1.04129 1.22296 0.97473 0.89596 0.93774 1.20880 0.87114 1.00406 1.20206 1.20681 0.94690 0.79922 1.01070 1.67793 0.95975 1.37389 1.15498 1.21922 0.94370 0.90621 0.89370 1.20860 0.90551 1.00572 1.04365 1.21992 0.98125 0.94681 1.03113 1.20899 0.83046 0.93609 0.99330 1.17557 0.85503 0.84495 0.78644 1.90845 1.30981 1.67509 1.50466 1.46445 1.08781 1.08445 1.70543 1.22672 0.99791 0.77043 0.99657 0.86817 1.24344 1.00896 1.00363 0.96106 1.21264 0.88420 0.93239 0.90686 0.89873 1.42367 1.08110 1.18464 1.67047 1.20140 0.99297 0.94110 1.33188 0.91488 1.25817 0.91853 1.05699 1.00811 1.70855 1.32733 1.08706 1.46467 0.83192 0.75134 0.74048 0.76250 1.22228 1.21357 1.22083 1.23886 0.96244 0.99487 1.00252 1.47311 1.05690 1.07353 1.47682 1.77302 0.82457 1.21943 1.32912 0.89330 0.89540 0.89890 0.81705 0.88901 0.89322 0.89236 0.80240 0.74105 0.90282 0.91839 0.79785 0.93359 0.91158 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.43 36.01 0.38 -0.26 16 2 C 0.13 1.45 7.15 -82.62 -0.59 0.85 16 3 C -0.26 -2.88 10.82 -39.18 -0.42 -3.30 16 4 C 0.26 3.40 7.93 -155.57 -1.23 2.16 16 5 N -0.45 -5.19 10.36 -8.47 -0.09 -5.28 16 6 C 0.20 1.82 6.82 -82.17 -0.56 1.26 16 7 C -0.11 -0.49 10.18 36.01 0.37 -0.12 16 8 C -0.15 -1.54 9.27 -39.36 -0.37 -1.91 16 9 C 0.15 1.97 6.82 -81.98 -0.56 1.41 16 10 C 0.56 8.40 7.79 -12.49 -0.10 8.31 16 11 O -0.52 -8.67 15.95 5.29 0.08 -8.59 16 12 N -0.69 -10.61 5.35 -54.07 -0.29 -10.90 16 13 C 0.11 1.80 4.24 -67.12 -0.28 1.52 16 14 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 15 C -0.17 -3.21 7.68 -25.92 -0.20 -3.41 16 16 C 0.18 3.54 4.48 -67.12 -0.30 3.24 16 17 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 18 N -0.72 -18.02 5.40 -52.64 -0.28 -18.31 16 19 C -0.34 -9.45 9.97 -15.06 -0.15 -9.60 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 22 N -0.94 -29.08 13.70 55.49 0.76 -28.32 16 23 Si 1.08 25.97 29.92 -169.99 -5.09 20.88 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.16 -2.64 7.58 -25.92 -0.20 -2.84 16 28 N -0.31 -4.22 3.94 -8.87 -0.03 -4.25 16 29 N -0.32 -4.42 9.92 33.51 0.33 -4.09 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.24 8.09 -51.93 -0.42 -0.18 16 37 H 0.18 1.41 7.65 -52.49 -0.40 1.00 16 38 H 0.42 6.40 5.76 -40.82 -0.24 6.17 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.37 9.47 6.75 -40.82 -0.28 9.19 16 42 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -34.84 372.24 -9.16 -44.00 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.85 Total: 13.30 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.31 Total: -4.06 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: 0.40 Total: -71.15 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.84 -9.16 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023105348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.733 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds