Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38506 * 125.47910 * 2 1 4 4 C 1.39067 * 107.66558 * 180.02562 * 3 2 1 5 5 N 1.33702 * 132.56091 * 179.36851 * 4 3 2 6 6 C 1.31143 * 121.18741 * 180.02562 * 5 4 3 7 7 C 1.50708 * 119.76648 * 179.97438 * 6 5 4 8 8 C 1.40133 * 120.46280 * 0.02562 * 6 5 4 9 9 C 1.36887 * 119.25986 * 359.97438 * 8 6 5 10 10 C 1.47497 * 120.61013 * 179.97438 * 9 8 6 11 11 O 1.21590 * 120.00116 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99955 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99906 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.84823 * 336.19884 * 13 12 10 15 15 C 1.53777 * 113.68707 * 107.47024 * 13 12 10 16 16 C 1.53781 * 87.08048 * 139.99173 * 15 13 12 17 17 H 1.08996 * 113.69517 * 89.12235 * 16 15 13 18 18 N 1.46499 * 113.61516 * 220.01918 * 16 15 13 19 19 C 1.36939 * 119.99547 * 252.49642 * 18 16 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53775 * 113.61200 * 205.00488 * 13 12 10 28 28 N 1.37289 * 106.80453 * 359.61269 * 4 3 2 29 29 N 1.31527 * 125.48008 * 179.47702 * 2 1 3 30 30 H 1.08999 * 109.46694 * 270.50180 * 1 2 3 31 31 H 1.09002 * 109.47191 * 30.50110 * 1 2 3 32 32 H 1.08995 * 109.46976 * 150.49889 * 1 2 3 33 33 H 1.07999 * 126.17050 * 359.47649 * 3 2 1 34 34 H 1.09003 * 109.46659 * 270.02081 * 7 6 5 35 35 H 1.09005 * 109.47035 * 30.01405 * 7 6 5 36 36 H 1.08998 * 109.46934 * 150.01767 * 7 6 5 37 37 H 1.08001 * 120.36691 * 179.97438 * 8 6 5 38 38 H 0.96998 * 119.99720 * 0.02562 * 12 10 9 39 39 H 1.09001 * 113.61887 * 25.44078 * 15 13 12 40 40 H 1.09001 * 113.61059 * 254.53429 * 15 13 12 41 41 H 0.96998 * 120.00185 * 72.49025 * 18 16 15 42 42 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 43 43 H 1.08997 * 113.61845 * 105.38638 * 27 13 12 44 44 H 1.09005 * 113.69458 * 334.49301 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3110 1.1279 0.0000 4 6 3.6349 0.7025 -0.0006 5 7 4.7972 1.3633 -0.0117 6 6 5.9421 0.7238 -0.0099 7 6 7.2332 1.5010 -0.0233 8 6 5.9733 -0.6771 0.0032 9 6 4.7943 -1.3725 0.0147 10 6 4.7924 -2.8474 0.0281 11 8 5.8446 -3.4568 0.0295 12 7 3.6243 -3.5198 0.0399 13 6 3.6225 -4.9847 0.0538 14 1 4.5391 -5.4130 -0.3518 15 6 3.2051 -5.5892 1.4048 16 6 2.4216 -6.6416 0.6027 17 1 3.0087 -7.5236 0.3466 18 7 1.1197 -6.9746 1.1861 19 6 0.9343 -8.1838 1.8015 20 1 1.7476 -8.8922 1.8563 21 6 -0.2991 -8.4990 2.3548 22 7 -1.2903 -7.6355 2.2884 23 14 -0.5523 -10.1488 3.1935 24 1 -1.0237 -11.1437 2.1969 25 1 -1.5664 -10.0069 4.2691 26 1 0.7319 -10.6075 3.7815 27 6 2.3420 -5.6046 -0.5300 28 7 3.6108 -0.6702 0.0079 29 7 2.2705 -1.0710 0.0098 30 1 -0.3633 0.0090 1.0276 31 1 -0.3634 0.8855 -0.5216 32 1 -0.3633 -0.8944 -0.5060 33 1 1.9710 2.1529 -0.0080 34 1 7.5400 1.6781 -1.0541 35 1 7.0877 2.4560 0.4817 36 1 8.0057 0.9310 0.4929 37 1 6.9171 -1.2022 0.0042 38 1 2.7850 -3.0336 0.0392 39 1 2.5707 -4.9323 1.9998 40 1 4.0375 -6.0042 1.9731 41 1 0.3891 -6.3385 1.1367 42 1 -1.1589 -6.7790 1.8526 43 1 2.4774 -6.0319 -1.5236 44 1 1.4707 -4.9528 -0.4648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023105348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = 92.599575 kcal Electronic energy + Delta-G solvation = -27379.452191 eV Core-core repulsion = 23527.074157 eV Total energy + Delta-G solvation = -3852.378034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60884 -41.34423 -39.90919 -39.30415 -36.23713 -35.71023 -34.36711 -33.70023 -31.64931 -31.47469 -29.59490 -28.54081 -26.98404 -26.74119 -25.73091 -23.76046 -23.64448 -22.04227 -21.84667 -20.90693 -19.80868 -19.50860 -18.21188 -17.84544 -17.63230 -17.57297 -16.82683 -16.36497 -16.13166 -15.81153 -15.66672 -15.46546 -15.10619 -14.99732 -14.63040 -14.30341 -14.07939 -13.96924 -13.87613 -13.53976 -13.35767 -13.14272 -12.94795 -12.71973 -12.67955 -12.40277 -12.29043 -12.23142 -12.15668 -11.94789 -11.86686 -11.68422 -11.24038 -11.06046 -10.91454 -10.47021 -10.29778 -9.17943 -9.14637 -8.42374 -5.36871 -1.15650 -0.38507 0.67828 1.09237 1.56402 1.57457 1.62714 1.68141 1.82225 2.19828 2.54509 2.68596 2.72367 3.12049 3.33584 3.48013 3.61850 3.64630 3.70010 3.74086 3.84836 4.00448 4.09308 4.10743 4.29410 4.46758 4.50594 4.62346 4.66876 4.68635 4.72767 4.74202 4.77847 4.80660 4.88988 4.95003 5.01660 5.10122 5.17790 5.31593 5.39583 5.43829 5.58508 6.05549 6.26842 6.38491 6.46463 6.71040 7.04740 7.94599 8.06702 9.09314 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.002711 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.261727 B =10324.806715 C =11593.961390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.119 3.881 3 C -0.258 4.258 4 C 0.244 3.756 5 N -0.465 5.465 6 C 0.207 3.793 7 C -0.104 4.104 8 C -0.130 4.130 9 C 0.113 3.887 10 C 0.557 3.443 11 O -0.540 6.540 12 N -0.692 5.692 13 C 0.131 3.869 14 H 0.124 0.876 15 C -0.169 4.169 16 C 0.161 3.839 17 H 0.087 0.913 18 N -0.735 5.735 19 C -0.336 4.336 20 H 0.070 0.930 21 C -0.105 4.105 22 N -0.975 5.975 23 Si 1.130 2.870 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.274 1.274 27 C -0.143 4.143 28 N -0.318 5.318 29 N -0.354 5.354 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.204 0.796 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.361 0.639 42 H 0.244 0.756 43 H 0.089 0.911 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.211 22.298 -7.703 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 C -0.289 4.289 4 C 0.016 3.984 5 N -0.179 5.179 6 C 0.042 3.958 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.003 4.003 10 C 0.342 3.658 11 O -0.418 6.418 12 N -0.346 5.346 13 C 0.026 3.974 14 H 0.141 0.859 15 C -0.211 4.211 16 C 0.050 3.950 17 H 0.105 0.895 18 N -0.375 5.375 19 C -0.467 4.467 20 H 0.088 0.912 21 C -0.296 4.296 22 N -0.623 5.623 23 Si 0.955 3.045 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.199 1.199 27 C -0.182 4.182 28 N -0.092 5.092 29 N -0.182 5.182 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.205 0.795 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.221 0.779 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.193 0.807 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.648 20.302 -6.891 25.966 hybrid contribution 0.204 1.307 -0.651 1.474 sum 14.851 21.609 -7.542 27.283 Atomic orbital electron populations 1.20521 0.82891 1.05332 1.04845 1.22845 0.98765 0.89217 0.92904 1.21249 0.86674 1.01347 1.19595 1.21136 0.95811 0.79830 1.01588 1.67907 0.96237 1.37482 1.16282 1.22690 0.95305 0.90515 0.87254 1.21076 0.88528 1.00491 1.05961 1.22455 0.97906 0.95299 0.99825 1.20854 0.84122 0.92668 1.02674 1.17794 0.84898 0.85483 0.77648 1.90819 1.31324 1.68309 1.51371 1.46424 1.09245 1.08017 1.70929 1.22419 0.99715 0.77787 0.97510 0.85865 1.24153 1.00282 0.99666 0.97011 1.21568 0.86664 0.94398 0.92333 0.89525 1.42531 1.09688 1.17616 1.67643 1.20489 0.99166 0.94962 1.32067 0.91223 1.27234 0.91987 1.08431 1.01926 1.70962 1.33812 1.09047 1.48449 0.82590 0.75754 0.70739 0.75431 1.20932 1.22029 1.19879 1.23694 0.96476 0.98077 0.99990 1.47345 1.05605 1.07690 1.48603 1.77207 0.83090 1.23462 1.34445 0.88666 0.86829 0.90499 0.79488 0.86931 0.88797 0.86765 0.77932 0.74044 0.92032 0.91724 0.80673 0.94529 0.89212 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.43 71.24 0.74 -0.45 16 2 C 0.12 2.74 7.15 42.67 0.31 3.04 16 3 C -0.26 -5.66 10.82 22.53 0.24 -5.42 16 4 C 0.24 6.14 7.93 133.23 1.06 7.20 16 5 N -0.47 -9.98 10.36 -180.72 -1.87 -11.85 16 6 C 0.21 3.25 6.82 43.12 0.29 3.55 16 7 C -0.10 -0.58 10.18 71.24 0.73 0.15 16 8 C -0.13 -2.36 9.27 22.41 0.21 -2.15 16 9 C 0.11 2.94 6.82 40.36 0.28 3.21 16 10 C 0.56 16.69 7.79 86.68 0.68 17.37 16 11 O -0.54 -17.48 15.95 -4.00 -0.06 -17.54 16 12 N -0.69 -21.40 5.35 -443.25 -2.37 -23.77 16 13 C 0.13 4.12 4.24 45.51 0.19 4.32 16 14 H 0.12 3.73 7.46 -2.39 -0.02 3.71 16 15 C -0.17 -6.25 7.68 31.12 0.24 -6.01 16 16 C 0.16 6.45 4.48 45.52 0.20 6.66 16 17 H 0.09 3.40 8.10 -2.39 -0.02 3.38 16 18 N -0.74 -37.44 5.40 -320.45 -1.73 -39.17 16 19 C -0.34 -18.99 9.97 84.03 0.84 -18.15 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 21 C -0.10 -6.12 5.50 84.86 0.47 -5.66 16 22 N -0.97 -61.44 13.70 21.65 0.30 -61.14 16 23 Si 1.13 52.34 29.92 68.60 2.05 54.39 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C -0.14 -4.69 7.58 31.12 0.24 -4.46 16 28 N -0.32 -8.77 3.94 -181.99 -0.72 -9.49 16 29 N -0.35 -10.03 9.92 -47.88 -0.48 -10.51 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.11 0.12 8.09 -2.39 -0.02 0.10 16 37 H 0.20 2.60 7.65 -2.91 -0.02 2.58 16 38 H 0.42 13.10 5.76 -92.71 -0.53 12.56 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.36 19.19 6.75 -92.71 -0.63 18.56 16 42 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 43 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.08 2.66 8.10 -2.38 -0.02 2.64 16 Total: -1.00 -76.68 372.24 1.85 -74.83 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.03 Total: 41.06 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.70 Total: 3.20 kcal Atomic # 7 Polarization: -149.07 SS G_CDS: -6.87 Total: -155.94 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.06 Total: -17.54 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -76.68 1.85 -74.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023105348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.429 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds