Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52999 * 109.49938 * 178.65416 * 13 12 11 16 16 N 1.46489 * 109.47409 * 184.99872 * 15 13 12 17 17 C 1.34782 * 120.00456 * 179.97438 * 16 15 13 18 18 O 1.21558 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.47755 * 120.00367 * 180.02562 * 17 16 15 20 20 C 1.39645 * 121.07256 * 359.97438 * 19 17 16 21 21 C 1.38339 * 119.37153 * 179.97438 * 20 19 17 22 22 N 1.31722 * 121.55199 * 359.97438 * 21 20 19 23 23 C 1.32120 * 121.94776 * 0.02562 * 22 21 20 24 24 N 1.37940 * 133.80893 * 180.02562 * 23 22 21 25 25 H 0.97004 * 126.35666 * 359.96019 * 24 23 22 26 26 C 1.35991 * 107.28310 * 179.39377 * 24 23 22 27 27 N 1.30281 * 110.05493 * 0.49787 * 26 24 23 28 28 C 1.34657 * 109.66888 * 359.55937 * 27 26 24 29 29 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 30 30 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 32 32 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 33 33 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 34 34 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 35 35 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 36 36 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 37 37 H 1.09008 * 109.46814 * 304.99971 * 15 13 12 38 38 H 1.08999 * 109.47358 * 64.99528 * 15 13 12 39 39 H 0.97004 * 120.00270 * 359.97438 * 16 15 13 40 40 H 1.07997 * 120.31496 * 0.02562 * 20 19 17 41 41 H 1.08008 * 119.22266 * 179.97438 * 21 20 19 42 42 H 1.08001 * 124.97158 * 180.02562 * 26 24 23 43 43 H 1.09004 * 109.58771 * 246.19814 * 29 9 7 44 44 H 1.08998 * 109.58854 * 6.63257 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4102 -6.0017 0.4468 16 7 3.6758 -5.9476 -0.2888 17 6 4.1733 -7.0639 -0.8571 18 8 3.5720 -8.1157 -0.7589 19 6 5.4502 -7.0094 -1.5986 20 6 6.1599 -5.8134 -1.7249 21 6 7.3521 -5.8026 -2.4264 22 7 7.8363 -6.8957 -2.9794 23 6 7.2123 -8.0572 -2.8952 24 7 7.4860 -9.3246 -3.3660 25 1 8.2597 -9.5896 -3.8876 26 6 6.4760 -10.1360 -2.9525 27 7 5.6019 -9.4501 -2.2723 28 6 5.9945 -8.1643 -2.1963 29 6 1.8152 -3.6539 -0.1863 30 1 -0.4850 0.8399 -0.0004 31 1 0.1001 -1.3265 1.6691 32 1 -0.6743 -2.6384 0.7459 33 1 1.3517 -2.9480 3.0109 34 1 -0.3776 -3.3672 3.0687 35 1 0.9907 -5.3887 2.6790 36 1 -0.0199 -5.0363 1.2570 37 1 2.5022 -6.7019 1.2773 38 1 1.6155 -6.3332 -0.2214 39 1 4.1560 -5.1084 -0.3669 40 1 5.7819 -4.9055 -1.2784 41 1 7.8988 -4.8761 -2.5230 42 1 6.4049 -11.1927 -3.1640 43 1 1.0392 -4.0654 -0.8318 44 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023396572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = 72.003954 kcal Electronic energy + Delta-G solvation = -27457.846105 eV Core-core repulsion = 23604.574978 eV Total energy + Delta-G solvation = -3853.271127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68441 -39.75548 -38.41195 -37.69431 -34.82066 -33.95136 -33.04089 -31.75067 -30.44883 -30.13303 -30.00996 -26.06441 -25.29540 -24.47538 -23.45898 -22.29783 -22.00965 -21.02314 -20.68971 -19.27273 -18.61999 -17.88338 -17.42999 -16.67207 -16.05636 -15.85563 -15.39390 -15.17514 -14.94495 -14.80452 -14.23119 -14.15346 -13.81765 -13.61763 -13.43456 -12.96840 -12.87912 -12.72099 -12.33148 -12.23664 -12.16059 -11.36374 -11.27314 -11.16970 -11.03272 -10.71182 -10.49794 -10.26122 -10.19658 -10.14058 -9.92493 -9.63069 -9.42077 -9.36256 -9.23468 -8.92548 -8.78276 -8.47588 -6.68681 -5.80555 -3.23201 0.13662 0.85380 2.19699 2.48028 2.88424 3.12261 3.35288 3.42984 3.44454 3.69063 3.79148 4.12951 4.39917 4.46488 4.48342 4.65959 4.81953 5.10731 5.20797 5.29794 5.40376 5.44257 5.47416 5.55466 5.61712 5.71769 5.84225 5.97024 6.01424 6.21321 6.24544 6.32931 6.37515 6.50441 6.59015 6.70427 6.73465 6.77349 6.86167 6.96326 7.39482 7.43907 7.50579 7.57907 7.66891 7.76871 8.27562 8.42800 9.19058 9.82896 10.39832 11.27671 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002815 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.204182 B = 9945.339186 C =11420.072599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.128 3.872 16 N -0.717 5.717 17 C 0.550 3.450 18 O -0.508 6.508 19 C -0.031 4.031 20 C -0.147 4.147 21 C 0.135 3.865 22 N -0.470 5.470 23 C 0.231 3.769 24 N -0.590 5.590 25 H 0.429 0.571 26 C 0.274 3.726 27 N -0.463 5.463 28 C 0.052 3.948 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.401 0.599 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.227 0.773 43 H 0.020 0.980 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -16.408 -3.555 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.005 3.995 16 N -0.370 5.370 17 C 0.335 3.665 18 O -0.383 6.383 19 C -0.044 4.044 20 C -0.170 4.170 21 C -0.031 4.031 22 N -0.183 5.183 23 C -0.006 4.006 24 N -0.205 5.205 25 H 0.269 0.731 26 C -0.013 4.013 27 N -0.181 5.181 28 C -0.071 4.071 29 C 0.027 3.973 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.170 0.830 41 H 0.192 0.808 42 H 0.243 0.757 43 H 0.037 0.963 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.798 -17.330 -3.549 22.434 hybrid contribution 1.006 1.400 -0.316 1.753 sum 14.803 -15.930 -3.865 22.087 Atomic orbital electron populations 1.70038 1.05303 1.25504 1.53701 1.25041 0.95254 0.98426 1.00905 0.86312 0.79224 0.83808 0.77600 1.21482 1.21591 1.20408 1.19149 0.92636 0.84862 1.41697 0.91719 1.44057 1.36040 1.01243 1.50039 1.20800 0.88528 0.98414 0.87986 1.22165 1.00100 0.95931 0.99837 1.21338 0.96727 0.97739 0.97970 1.22043 0.98889 0.93493 0.99439 0.90782 1.21496 0.84425 0.98121 0.95469 1.45979 1.25030 1.11136 1.54874 1.17924 0.84508 0.84332 0.79712 1.90839 1.59552 1.29288 1.58644 1.19737 0.95524 0.91329 0.97854 1.22302 0.96353 0.97786 1.00536 1.22561 0.93152 0.94905 0.92447 1.66220 1.34359 0.96807 1.20922 1.18979 0.94475 0.87382 0.99766 1.42923 1.24148 1.06125 1.47278 0.73069 1.25765 0.83254 0.98383 0.93919 1.70368 1.26615 1.02465 1.18614 1.19223 0.94147 0.92771 1.00971 1.20991 0.97473 0.86852 0.92012 0.93627 0.89564 0.96448 0.92745 0.93189 0.93403 0.92444 0.91769 0.91368 0.76274 0.82974 0.80773 0.75685 0.96259 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.69 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.64 7.89 -52.49 -0.41 1.23 16 9 N -0.59 -14.22 2.99 -172.06 -0.51 -14.73 16 10 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.62 5.16 -26.69 -0.14 -1.75 16 13 C -0.12 -1.90 2.38 -90.27 -0.22 -2.11 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.88 5.07 -4.05 -0.02 1.86 16 16 N -0.72 -9.81 5.29 -61.28 -0.32 -10.13 16 17 C 0.55 8.53 7.79 -12.37 -0.10 8.43 16 18 O -0.51 -9.70 16.19 5.32 0.09 -9.62 16 19 C -0.03 -0.43 5.93 -104.45 -0.62 -1.04 16 20 C -0.15 -1.48 9.60 -39.02 -0.37 -1.85 16 21 C 0.14 1.26 11.14 -17.56 -0.20 1.06 16 22 N -0.47 -5.23 10.35 -12.30 -0.13 -5.36 16 23 C 0.23 2.67 8.46 -155.64 -1.32 1.35 16 24 N -0.59 -4.46 6.23 -13.21 -0.08 -4.54 16 25 H 0.43 1.64 8.96 -40.82 -0.37 1.28 16 26 C 0.27 2.18 12.97 -89.68 -1.16 1.01 16 27 N -0.46 -6.28 10.63 -11.88 -0.13 -6.41 16 28 C 0.05 0.73 6.85 -84.62 -0.58 0.15 16 29 C 0.15 3.01 5.63 -3.48 -0.02 3.00 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 4.71 5.86 -40.82 -0.24 4.47 16 40 H 0.15 1.16 6.53 -52.49 -0.34 0.82 16 41 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.23 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.93 7.16 -51.93 -0.37 0.56 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -36.39 360.79 -11.04 -47.43 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.83 Total: 2.63 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -5.15 Total: 4.38 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -0.55 Total: -66.31 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.39 -11.04 -47.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023396572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.436 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds