Wall clock time and date at job start Tue Mar 31 2020 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52999 * 109.49938 * 178.65416 * 13 12 11 16 16 N 1.46489 * 109.47409 * 184.99872 * 15 13 12 17 17 C 1.34782 * 120.00456 * 179.97438 * 16 15 13 18 18 O 1.21558 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.47755 * 120.00367 * 180.02562 * 17 16 15 20 20 C 1.39645 * 121.07256 * 359.97438 * 19 17 16 21 21 C 1.38339 * 119.37153 * 179.97438 * 20 19 17 22 22 N 1.31722 * 121.55199 * 359.97438 * 21 20 19 23 23 C 1.32120 * 121.94776 * 0.02562 * 22 21 20 24 24 N 1.37940 * 133.80893 * 180.02562 * 23 22 21 25 25 H 0.97004 * 126.35666 * 359.96019 * 24 23 22 26 26 C 1.35991 * 107.28310 * 179.39377 * 24 23 22 27 27 N 1.30281 * 110.05493 * 0.49787 * 26 24 23 28 28 C 1.34657 * 109.66888 * 359.55937 * 27 26 24 29 29 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 30 30 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 32 32 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 33 33 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 34 34 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 35 35 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 36 36 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 37 37 H 1.09008 * 109.46814 * 304.99971 * 15 13 12 38 38 H 1.08999 * 109.47358 * 64.99528 * 15 13 12 39 39 H 0.97004 * 120.00270 * 359.97438 * 16 15 13 40 40 H 1.07997 * 120.31496 * 0.02562 * 20 19 17 41 41 H 1.08008 * 119.22266 * 179.97438 * 21 20 19 42 42 H 1.08001 * 124.97158 * 180.02562 * 26 24 23 43 43 H 1.09004 * 109.58771 * 246.19814 * 29 9 7 44 44 H 1.08998 * 109.58854 * 6.63257 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4102 -6.0017 0.4468 16 7 3.6758 -5.9476 -0.2888 17 6 4.1733 -7.0639 -0.8571 18 8 3.5720 -8.1157 -0.7589 19 6 5.4502 -7.0094 -1.5986 20 6 6.1599 -5.8134 -1.7249 21 6 7.3521 -5.8026 -2.4264 22 7 7.8363 -6.8957 -2.9794 23 6 7.2123 -8.0572 -2.8952 24 7 7.4860 -9.3246 -3.3660 25 1 8.2597 -9.5896 -3.8876 26 6 6.4760 -10.1360 -2.9525 27 7 5.6019 -9.4501 -2.2723 28 6 5.9945 -8.1643 -2.1963 29 6 1.8152 -3.6539 -0.1863 30 1 -0.4850 0.8399 -0.0004 31 1 0.1001 -1.3265 1.6691 32 1 -0.6743 -2.6384 0.7459 33 1 1.3517 -2.9480 3.0109 34 1 -0.3776 -3.3672 3.0687 35 1 0.9907 -5.3887 2.6790 36 1 -0.0199 -5.0363 1.2570 37 1 2.5022 -6.7019 1.2773 38 1 1.6155 -6.3332 -0.2214 39 1 4.1560 -5.1084 -0.3669 40 1 5.7819 -4.9055 -1.2784 41 1 7.8988 -4.8761 -2.5230 42 1 6.4049 -11.1927 -3.1640 43 1 1.0392 -4.0654 -0.8318 44 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023396572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:57 Heat of formation + Delta-G solvation = 47.246506 kcal Electronic energy + Delta-G solvation = -27458.919668 eV Core-core repulsion = 23604.574978 eV Total energy + Delta-G solvation = -3854.344691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.42960 -40.88620 -39.42893 -39.03779 -36.26852 -34.87033 -34.56602 -32.74022 -32.26209 -31.51626 -30.76474 -27.36862 -27.10481 -25.48866 -24.21613 -23.79884 -23.12930 -22.34674 -21.77662 -20.71790 -19.61942 -18.66781 -18.60652 -18.23900 -16.95549 -16.89064 -16.78847 -16.36125 -16.25492 -15.73714 -15.69387 -15.34707 -15.00220 -14.90053 -14.78438 -14.49457 -13.98095 -13.77097 -13.74571 -13.59519 -13.54066 -12.97282 -12.85087 -12.46534 -12.24876 -12.17732 -11.94868 -11.94211 -11.79811 -11.56249 -11.41166 -11.15387 -11.04822 -10.49467 -10.26116 -10.18904 -9.92372 -9.59905 -8.64502 -7.83043 -5.28474 -0.69921 0.08645 1.50045 1.52200 1.57635 1.61579 1.69563 1.91854 2.04334 2.54838 2.80310 3.13273 3.32220 3.41316 3.56790 3.63354 3.71191 3.96379 4.03244 4.04108 4.08968 4.21990 4.43262 4.44916 4.59137 4.62615 4.67670 4.79060 4.81150 4.90278 4.92310 5.00405 5.04145 5.13773 5.24073 5.35186 5.39406 5.47987 5.49585 5.60889 5.70694 5.81592 6.19283 6.42292 6.48116 6.72675 6.80394 7.15613 7.18440 7.90019 8.42517 9.23452 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002815 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.204182 B = 9945.339186 C =11420.072599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.258 4.258 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.082 0.918 15 C 0.139 3.861 16 N -0.708 5.708 17 C 0.551 3.449 18 O -0.554 6.554 19 C -0.067 4.067 20 C -0.132 4.132 21 C 0.133 3.867 22 N -0.476 5.476 23 C 0.216 3.784 24 N -0.574 5.574 25 H 0.447 0.553 26 C 0.299 3.701 27 N -0.528 5.528 28 C 0.024 3.976 29 C 0.151 3.849 30 H 0.248 0.752 31 H 0.052 0.948 32 H -0.010 1.010 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.412 0.588 40 H 0.176 0.824 41 H 0.213 0.787 42 H 0.278 0.722 43 H 0.004 0.996 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.127 -17.194 -3.554 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.388 4.388 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.136 4.136 13 C -0.119 4.119 14 H 0.100 0.900 15 C 0.015 3.985 16 N -0.361 5.361 17 C 0.338 3.662 18 O -0.432 6.432 19 C -0.080 4.080 20 C -0.154 4.154 21 C -0.033 4.033 22 N -0.189 5.189 23 C -0.022 4.022 24 N -0.190 5.190 25 H 0.291 0.709 26 C 0.013 3.987 27 N -0.247 5.247 28 C -0.100 4.100 29 C 0.026 3.974 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.250 0.750 40 H 0.193 0.807 41 H 0.230 0.770 42 H 0.293 0.707 43 H 0.021 0.979 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.588 -18.129 -3.566 24.830 hybrid contribution 0.187 1.573 -0.394 1.632 sum 16.775 -16.556 -3.960 23.899 Atomic orbital electron populations 1.70206 1.06883 1.25703 1.55716 1.25823 0.95949 1.01651 1.01556 0.85282 0.78413 0.79640 0.77243 1.21483 1.22455 1.18814 1.19588 0.93233 0.85788 1.40239 0.90670 1.44332 1.35955 1.02215 1.50656 1.20635 0.87678 0.97835 0.89232 1.21988 1.00977 0.95844 0.97981 1.21340 0.96543 0.96818 0.98891 1.21800 0.99189 0.93118 0.97836 0.89995 1.21308 0.84596 0.97106 0.95531 1.45868 1.24598 1.11337 1.54306 1.18275 0.84943 0.83806 0.79197 1.90799 1.61027 1.30865 1.60486 1.19762 0.95507 0.92952 0.99763 1.22589 0.96021 0.97320 0.99476 1.23223 0.92946 0.95719 0.91364 1.66339 1.34429 0.97095 1.21047 1.19213 0.94154 0.88626 1.00217 1.42948 1.24627 1.04729 1.46666 0.70891 1.26746 0.81459 0.99732 0.90793 1.70320 1.29431 1.03110 1.21839 1.19570 0.95330 0.93241 1.01817 1.21125 0.97219 0.85715 0.93357 0.94317 0.92988 0.99157 0.92608 0.91386 0.90191 0.92826 0.90891 0.92566 0.75047 0.80683 0.77045 0.70704 0.97851 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 11.19 21.65 0.24 -55.02 16 2 C -0.05 -2.99 4.91 84.86 0.42 -2.58 16 3 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.26 -13.56 9.58 84.03 0.81 -12.76 16 8 H 0.08 3.71 7.89 -2.92 -0.02 3.69 16 9 N -0.61 -29.35 2.99 -698.26 -2.09 -31.44 16 10 C 0.17 8.18 5.31 86.36 0.46 8.64 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.44 16 12 C -0.10 -2.98 5.16 30.62 0.16 -2.82 16 13 C -0.10 -3.01 2.38 -10.57 -0.03 -3.04 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.14 3.89 5.07 86.38 0.44 4.33 16 16 N -0.71 -18.65 5.29 -466.08 -2.47 -21.11 16 17 C 0.55 17.12 7.79 86.76 0.68 17.80 16 18 O -0.55 -21.67 16.19 -3.90 -0.06 -21.73 16 19 C -0.07 -1.79 5.93 -19.75 -0.12 -1.91 16 20 C -0.13 -2.43 9.60 22.63 0.22 -2.21 16 21 C 0.13 2.16 11.14 84.73 0.94 3.10 16 22 N -0.48 -9.71 10.35 -192.83 -2.00 -11.71 16 23 C 0.22 4.72 8.46 133.92 1.13 5.85 16 24 N -0.57 -7.53 6.23 -195.71 -1.22 -8.75 16 25 H 0.45 2.27 8.96 -92.71 -0.83 1.44 16 26 C 0.30 4.20 12.97 180.02 2.34 6.53 16 27 N -0.53 -14.25 10.63 -191.51 -2.04 -16.28 16 28 C 0.02 0.66 6.85 40.01 0.27 0.94 16 29 C 0.15 5.86 5.63 86.51 0.49 6.35 16 30 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 8.91 5.86 -92.71 -0.54 8.37 16 40 H 0.18 2.21 6.53 -2.91 -0.02 2.19 16 41 H 0.21 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.28 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.06 2.19 7.16 -2.39 -0.02 2.17 16 Total: -1.00 -83.12 360.79 0.47 -82.65 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.32 Total: 14.02 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 8.39 Total: 23.79 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -9.56 Total: -144.31 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -83.12 0.47 -82.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023396572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.898 kcal (2) G-P(sol) polarization free energy of solvation -83.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds