Wall clock time and date at job start Tue Mar 31 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00360 * 2 1 4 4 H 1.48501 * 109.47179 * 269.02445 * 3 2 1 5 5 H 1.48507 * 109.47053 * 29.02251 * 3 2 1 6 6 H 1.48501 * 109.47306 * 149.02269 * 3 2 1 7 7 C 1.38812 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00590 * 342.93679 * 7 2 1 9 9 N 1.36940 * 119.99484 * 162.65761 * 7 2 1 10 10 C 1.46924 * 120.63319 * 329.14225 * 9 7 2 11 11 C 1.53187 * 108.77780 * 233.58802 * 10 9 7 12 12 C 1.53040 * 109.31472 * 305.36510 * 11 10 9 13 13 C 1.53045 * 109.53815 * 61.36499 * 12 11 10 14 14 C 1.46931 * 120.63076 * 148.86574 * 9 7 2 15 15 H 1.08992 * 109.58718 * 246.20075 * 14 9 7 16 16 C 1.53003 * 109.58458 * 6.62765 * 14 9 7 17 17 N 1.46499 * 109.46988 * 299.77595 * 16 14 9 18 18 C 1.34778 * 120.00165 * 180.02562 * 17 16 14 19 19 O 1.21683 * 119.99767 * 0.02562 * 18 17 16 20 20 C 1.46812 * 119.99985 * 179.97438 * 18 17 16 21 21 C 1.40403 * 126.54246 * 0.02922 * 20 18 17 22 22 N 1.30972 * 108.76705 * 179.97438 * 21 20 18 23 23 N 1.39711 * 109.48816 * 359.97438 * 22 21 20 24 24 C 1.36359 * 133.19781 * 180.02562 * 23 22 21 25 25 C 1.35298 * 119.80987 * 179.30623 * 24 23 22 26 26 N 1.33245 * 121.26836 * 0.57792 * 25 24 23 27 27 C 1.31407 * 121.08232 * 359.62266 * 26 25 24 28 28 C 1.36817 * 107.96761 * 359.75050 * 23 22 21 29 29 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58593 * 353.37597 * 10 9 7 31 31 H 1.09004 * 109.58622 * 113.65665 * 10 9 7 32 32 H 1.08999 * 109.50131 * 65.31639 * 11 10 9 33 33 H 1.09006 * 109.49923 * 185.37876 * 11 10 9 34 34 H 1.09001 * 109.46469 * 181.38466 * 12 11 10 35 35 H 1.09003 * 109.45692 * 301.35970 * 12 11 10 36 36 H 1.08996 * 109.49470 * 58.58326 * 13 12 11 37 37 H 1.08992 * 109.49766 * 178.65135 * 13 12 11 38 38 H 1.09001 * 109.47345 * 59.77221 * 16 14 9 39 39 H 1.09001 * 109.47174 * 179.77861 * 16 14 9 40 40 H 0.97002 * 120.00188 * 0.02562 * 17 16 14 41 41 H 1.08002 * 125.62288 * 359.97135 * 21 20 18 42 42 H 1.08002 * 120.09216 * 359.95824 * 24 23 22 43 43 H 1.07992 * 119.36650 * 180.17965 * 25 24 23 44 44 H 1.07998 * 120.18296 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5184 2.0344 -1.3999 5 1 1.4375 2.6586 0.6793 6 1 3.5373 1.4461 0.7206 7 6 2.0101 -1.2022 0.0005 8 1 1.5058 -2.1168 0.2754 9 7 3.3328 -1.2293 -0.3530 10 6 3.8672 -0.2682 -1.3273 11 6 4.5806 -1.0404 -2.4414 12 6 5.6354 -1.9613 -1.8236 13 6 4.9540 -2.9703 -0.8964 14 6 4.2460 -2.2162 0.2394 15 1 4.9838 -1.7059 0.8585 16 6 3.4493 -3.2036 1.0946 17 7 2.7621 -2.4780 2.1658 18 6 1.9953 -3.1476 3.0491 19 8 1.8741 -4.3549 2.9571 20 6 1.3070 -2.4205 4.1229 21 6 1.3505 -1.0367 4.3567 22 7 0.6111 -0.7627 5.4025 23 7 0.0518 -1.9424 5.8999 24 6 -0.7766 -2.2128 6.9487 25 6 -1.1715 -3.4855 7.1831 26 7 -0.7571 -4.4911 6.4133 27 6 0.0447 -4.2794 5.3940 28 6 0.4734 -2.9758 5.1085 29 1 -0.4850 0.8401 -0.0004 30 1 3.0496 0.3142 -1.7522 31 1 4.5728 0.3994 -0.8328 32 1 3.8544 -1.6376 -2.9928 33 1 5.0635 -0.3372 -3.1200 34 1 6.1615 -2.4939 -2.6159 35 1 6.3471 -1.3658 -1.2517 36 1 4.2242 -3.5492 -1.4623 37 1 5.7030 -3.6410 -0.4754 38 1 2.7143 -3.7133 0.4715 39 1 4.1279 -3.9371 1.5300 40 1 2.8589 -1.5157 2.2394 41 1 1.9026 -0.3168 3.7709 42 1 -1.1251 -1.4120 7.5840 43 1 -1.8300 -3.6912 8.0140 44 1 0.3719 -5.1053 4.7799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024483398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:17 Heat of formation + Delta-G solvation = 111.566179 kcal Electronic energy + Delta-G solvation = -28646.060794 eV Core-core repulsion = 24794.505214 eV Total energy + Delta-G solvation = -3851.555580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41746 -39.18892 -38.28641 -37.71375 -34.25027 -33.60303 -33.05863 -31.33163 -31.02858 -30.71893 -29.21622 -26.25347 -24.90498 -24.77147 -23.30033 -22.69011 -22.36343 -20.77994 -19.92573 -19.38027 -18.33388 -17.36733 -16.92854 -16.23525 -16.04205 -15.64650 -15.61050 -15.07235 -14.90907 -14.88519 -13.87131 -13.74857 -13.73315 -13.46380 -13.31498 -13.24325 -12.97468 -12.94237 -12.49340 -12.13449 -11.99774 -11.65734 -11.33617 -11.13227 -10.86820 -10.79539 -10.65964 -10.46113 -10.21338 -10.05402 -9.97146 -9.79373 -9.63217 -9.51012 -9.32890 -8.71999 -8.30389 -7.78430 -6.96683 -5.99777 -3.41551 0.37492 0.82148 1.93895 2.28822 3.23814 3.25286 3.38974 3.42526 3.71212 3.96880 4.12942 4.18645 4.25516 4.44341 4.78300 4.84117 4.90662 5.12623 5.21115 5.32242 5.35216 5.39086 5.40740 5.49150 5.68462 5.74984 5.88053 5.95553 6.09017 6.12154 6.19523 6.21383 6.32175 6.38000 6.42443 6.46390 6.47156 6.56411 6.68330 6.74839 6.97356 7.16446 7.31472 7.52808 7.91527 8.26418 8.32411 8.87258 8.89585 9.64727 10.03615 11.14490 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.003999 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.332283 B = 7000.785644 C = 8158.344793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.876 3.124 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.095 0.905 9 N -0.605 5.605 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.163 3.837 15 H 0.037 0.963 16 C 0.138 3.862 17 N -0.687 5.687 18 C 0.594 3.406 19 O -0.568 6.568 20 C -0.252 4.252 21 C 0.125 3.875 22 N -0.305 5.305 23 N -0.252 5.252 24 C 0.063 3.937 25 C 0.020 3.980 26 N -0.452 5.452 27 C 0.173 3.827 28 C 0.086 3.914 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.409 0.591 41 H 0.204 0.796 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -3.675 9.206 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.706 3.294 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.112 0.888 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.056 3.944 15 H 0.055 0.945 16 C 0.014 3.986 17 N -0.337 5.337 18 C 0.380 3.620 19 O -0.449 6.449 20 C -0.270 4.270 21 C -0.054 4.054 22 N -0.129 5.129 23 N -0.020 5.020 24 C -0.066 4.066 25 C -0.122 4.122 26 N -0.163 5.163 27 C -0.006 4.006 28 C -0.036 4.036 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.245 0.755 41 H 0.221 0.779 42 H 0.196 0.804 43 H 0.200 0.800 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.031 -4.130 10.228 11.744 hybrid contribution 0.848 2.093 -0.888 2.426 sum 4.879 -2.037 9.340 10.733 Atomic orbital electron populations 1.69809 1.05661 1.26440 1.52459 1.25341 0.95075 0.97258 0.99409 0.87100 0.79645 0.85096 0.77522 1.21523 1.23301 1.19577 1.19015 0.83399 0.94619 1.42086 0.88791 1.44433 1.06557 1.36432 1.45577 1.21379 0.96856 0.92021 0.89787 1.22001 0.98103 0.98807 0.98574 1.21370 0.97491 0.97467 0.98279 1.22006 0.99273 0.97713 0.97791 1.20853 0.91471 0.89975 0.92102 0.94504 1.21255 0.95386 0.93785 0.88168 1.45643 1.47970 1.11841 1.28204 1.16750 0.78507 0.86191 0.80504 1.90703 1.64785 1.13941 1.75499 1.19923 1.10859 0.93218 1.03004 1.24288 0.93579 0.95307 0.92195 1.77684 1.18339 1.00325 1.16528 1.46219 1.29816 1.07042 1.18892 1.22579 0.93549 1.00202 0.90230 1.22351 1.01958 0.86546 1.01312 1.68257 1.09563 1.34444 1.04083 1.23322 0.90763 0.93665 0.92874 1.20356 0.98448 0.90815 0.93996 0.92772 0.90992 0.95880 0.91797 0.93127 0.93085 0.92783 0.91554 0.92548 0.91063 0.92235 0.75451 0.77905 0.80439 0.80030 0.78731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.97 55.49 0.78 -25.15 16 2 C 0.03 0.76 5.26 -17.43 -0.09 0.67 16 3 Si 0.88 20.51 24.32 -169.99 -4.13 16.37 16 4 H -0.29 -6.71 6.52 56.52 0.37 -6.35 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.27 -6.05 6.75 56.52 0.38 -5.67 16 7 C -0.26 -6.45 7.42 -15.06 -0.11 -6.56 16 8 H 0.09 2.56 6.06 -52.49 -0.32 2.25 16 9 N -0.60 -12.65 2.71 -164.52 -0.45 -13.10 16 10 C 0.12 2.50 4.19 -3.71 -0.02 2.48 16 11 C -0.14 -2.24 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -1.56 5.88 -26.69 -0.16 -1.71 16 13 C -0.13 -1.92 5.40 -26.38 -0.14 -2.06 16 14 C 0.16 2.82 3.03 -67.37 -0.20 2.61 16 15 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 16 C 0.14 2.44 4.44 -4.04 -0.02 2.42 16 17 N -0.69 -12.65 3.84 -61.57 -0.24 -12.89 16 18 C 0.59 11.35 7.79 -12.79 -0.10 11.25 16 19 O -0.57 -11.80 15.81 5.20 0.08 -11.72 16 20 C -0.25 -4.47 6.16 -104.75 -0.65 -5.11 16 21 C 0.12 2.09 11.44 -17.10 -0.20 1.89 16 22 N -0.31 -5.08 12.60 30.76 0.39 -4.69 16 23 N -0.25 -3.83 3.91 -10.50 -0.04 -3.87 16 24 C 0.06 0.70 11.24 -16.59 -0.19 0.51 16 25 C 0.02 0.20 11.07 -17.99 -0.20 0.00 16 26 N -0.45 -5.91 10.44 -13.26 -0.14 -6.05 16 27 C 0.17 2.54 10.98 -17.01 -0.19 2.35 16 28 C 0.09 1.42 6.77 -84.06 -0.57 0.85 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.61 4.65 -51.93 -0.24 1.37 16 31 H 0.02 0.46 7.05 -51.93 -0.37 0.09 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.41 7.53 6.31 -40.82 -0.26 7.27 16 41 H 0.20 3.04 7.46 -52.49 -0.39 2.65 16 42 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.20 2.78 7.20 -52.49 -0.38 2.40 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -31.66 350.84 -7.20 -38.87 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.75 Total: 9.75 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -2.98 Total: 7.19 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: 0.30 Total: -65.74 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.13 Total: 16.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.66 -7.20 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024483398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.433 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds