Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48511 * 109.47034 * 268.90305 * 3 2 1 5 5 H 1.48497 * 109.47278 * 28.90247 * 3 2 1 6 6 H 1.48494 * 109.47472 * 148.90549 * 3 2 1 7 7 C 1.38810 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00075 * 342.97244 * 7 2 1 9 9 N 1.36938 * 120.00164 * 162.69555 * 7 2 1 10 10 C 1.46928 * 120.62921 * 329.11801 * 9 7 2 11 11 C 1.53193 * 108.77362 * 233.58428 * 10 9 7 12 12 C 1.53040 * 109.31555 * 305.36867 * 11 10 9 13 13 C 1.53033 * 109.54083 * 61.36461 * 12 11 10 14 14 C 1.46925 * 120.63154 * 148.84139 * 9 7 2 15 15 H 1.09002 * 109.58292 * 246.20119 * 14 9 7 16 16 C 1.53005 * 109.58679 * 6.62382 * 14 9 7 17 17 N 1.46493 * 109.47234 * 299.77695 * 16 14 9 18 18 C 1.34772 * 120.00396 * 180.02562 * 17 16 14 19 19 O 1.21598 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.47582 * 120.00374 * 180.02562 * 18 17 16 21 21 C 1.36476 * 125.91654 * 179.97438 * 20 18 17 22 22 N 1.36197 * 107.01025 * 179.97438 * 21 20 18 23 23 C 1.36679 * 132.44959 * 180.02562 * 22 21 20 24 24 C 1.35475 * 119.09933 * 179.97438 * 23 22 21 25 25 C 1.40298 * 119.36264 * 359.97438 * 24 23 22 26 26 N 1.31142 * 120.41354 * 0.02562 * 25 24 23 27 27 C 1.34285 * 120.94234 * 359.97438 * 26 25 24 28 28 N 1.32208 * 131.65412 * 180.33563 * 27 26 25 29 29 H 0.96995 * 120.00366 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58587 * 353.36723 * 10 9 7 31 31 H 1.09001 * 109.58524 * 113.65929 * 10 9 7 32 32 H 1.09007 * 109.49814 * 65.31840 * 11 10 9 33 33 H 1.09001 * 109.49738 * 185.37777 * 11 10 9 34 34 H 1.09005 * 109.46211 * 181.38932 * 12 11 10 35 35 H 1.08997 * 109.45513 * 301.35590 * 12 11 10 36 36 H 1.09000 * 109.50202 * 58.58857 * 13 12 11 37 37 H 1.08996 * 109.50035 * 178.65714 * 13 12 11 38 38 H 1.08998 * 109.47001 * 59.77584 * 16 14 9 39 39 H 1.09001 * 109.47034 * 179.77733 * 16 14 9 40 40 H 0.97004 * 119.99852 * 359.97438 * 17 16 14 41 41 H 1.07995 * 126.50063 * 0.02562 * 21 20 18 42 42 H 1.07997 * 120.44423 * 359.95725 * 23 22 21 43 43 H 1.08005 * 120.31277 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.79205 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5209 2.0330 -1.3999 5 1 1.4362 2.6593 0.6767 6 1 3.5359 1.4470 0.7230 7 6 2.0102 -1.2021 0.0005 8 1 1.5057 -2.1169 0.2748 9 7 3.3331 -1.2291 -0.3522 10 6 3.8678 -0.2680 -1.3264 11 6 4.5821 -1.0404 -2.4400 12 6 5.6366 -1.9610 -1.8214 13 6 4.9549 -2.9699 -0.8945 14 6 4.2460 -2.2158 0.2408 15 1 4.9834 -1.7053 0.8603 16 6 3.4489 -3.2032 1.0957 17 7 2.7611 -2.4776 2.1664 18 6 1.9939 -3.1471 3.0494 19 8 1.8724 -4.3535 2.9570 20 6 1.3005 -2.4161 4.1277 21 6 0.4974 -2.9696 5.0822 22 7 0.0629 -1.9521 5.8765 23 6 -0.7532 -1.9212 6.9724 24 6 -1.0114 -0.7323 7.5683 25 6 -0.4361 0.4370 7.0486 26 7 0.3439 0.3819 5.9958 27 6 0.6095 -0.7887 5.3938 28 7 1.3557 -1.0876 4.3442 29 1 -0.4850 0.8400 -0.0004 30 1 3.0504 0.3141 -1.7518 31 1 4.5732 0.3997 -0.8316 32 1 3.8562 -1.6378 -2.9917 33 1 5.0652 -0.3371 -3.1183 34 1 6.1633 -2.4936 -2.6134 35 1 6.3478 -1.3654 -1.2492 36 1 4.2255 -3.5492 -1.4607 37 1 5.7037 -3.6404 -0.4728 38 1 2.7145 -3.7131 0.4723 39 1 4.1274 -3.9366 1.5315 40 1 2.8584 -1.5153 2.2404 41 1 0.2532 -4.0163 5.1883 42 1 -1.1866 -2.8322 7.3578 43 1 -1.6532 -0.6853 8.4357 44 1 -0.6369 1.3885 7.5185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024531339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = 104.987817 kcal Electronic energy + Delta-G solvation = -28531.894899 eV Core-core repulsion = 24680.054059 eV Total energy + Delta-G solvation = -3851.840839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97701 -39.27246 -38.21328 -37.52822 -34.65487 -34.18483 -32.93369 -31.37130 -30.67613 -30.50261 -29.30958 -26.47881 -25.26700 -24.34064 -23.25870 -22.59948 -22.55659 -20.66643 -19.83761 -19.29211 -18.41300 -17.62693 -16.96381 -16.38208 -16.29409 -15.76105 -15.47622 -15.19765 -14.83532 -14.47409 -14.04721 -13.91606 -13.65597 -13.61009 -13.23000 -13.17033 -13.13361 -12.45048 -12.38770 -12.05304 -12.01593 -11.71011 -11.54888 -11.22076 -10.72369 -10.56782 -10.51788 -10.36641 -10.12676 -9.89108 -9.86031 -9.64547 -9.41463 -9.32568 -9.16940 -8.57611 -8.26746 -8.10075 -6.83204 -5.85652 -3.26725 0.37391 0.97424 2.21561 2.27328 3.39057 3.43506 3.46263 3.58401 3.59260 3.80497 4.01639 4.17406 4.37639 4.60447 4.61596 4.88292 4.90533 5.17781 5.31162 5.35639 5.41459 5.41793 5.48336 5.50267 5.60579 5.82701 5.93403 6.01764 6.02497 6.16511 6.22399 6.27475 6.41447 6.45075 6.45784 6.48574 6.53744 6.63794 6.77702 6.82248 7.04997 7.18521 7.47686 7.86501 8.05127 8.34641 8.44363 8.86889 9.01165 9.79864 10.16626 11.29311 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.004084 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.200106 B = 6853.937093 C = 8089.458439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.035 3.965 3 Si 0.884 3.116 4 H -0.291 1.291 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.091 0.909 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.135 4.135 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.162 3.838 15 H 0.037 0.963 16 C 0.134 3.866 17 N -0.670 5.670 18 C 0.595 3.405 19 O -0.559 6.559 20 C 0.041 3.959 21 C -0.024 4.024 22 N -0.403 5.403 23 C 0.111 3.889 24 C -0.208 4.208 25 C 0.164 3.836 26 N -0.426 5.426 27 C 0.373 3.627 28 N -0.424 5.424 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.421 0.579 41 H 0.199 0.801 42 H 0.175 0.825 43 H 0.164 0.836 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -3.708 13.651 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.715 3.285 4 H -0.219 1.219 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.109 0.891 9 N -0.329 5.329 10 C 0.000 4.000 11 C -0.174 4.174 12 C -0.146 4.146 13 C -0.167 4.167 14 C 0.056 3.944 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.319 5.319 18 C 0.378 3.622 19 O -0.439 6.439 20 C -0.093 4.093 21 C -0.159 4.159 22 N -0.081 5.081 23 C -0.020 4.020 24 C -0.231 4.231 25 C -0.025 4.025 26 N -0.136 5.136 27 C 0.024 3.976 28 N -0.147 5.147 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.260 0.740 41 H 0.216 0.784 42 H 0.192 0.808 43 H 0.181 0.819 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.435 -3.295 12.510 13.164 hybrid contribution -0.630 0.370 0.783 1.071 sum 1.805 -2.925 13.292 13.730 Atomic orbital electron populations 1.69785 1.05805 1.26386 1.52485 1.25284 0.95083 0.97389 0.98737 0.86977 0.79896 0.84907 0.76723 1.21896 1.23332 1.19577 1.18908 0.83259 0.94547 1.42570 0.89107 1.44407 1.06497 1.36481 1.45563 1.21372 0.96871 0.92010 0.89744 1.22004 0.98066 0.98789 0.98579 1.21365 0.97512 0.97469 0.98235 1.22002 0.99221 0.97699 0.97784 1.20844 0.91527 0.90023 0.92055 0.94509 1.21335 0.95476 0.93932 0.88238 1.45805 1.46150 1.12878 1.27078 1.16725 0.79102 0.85761 0.80573 1.90740 1.64760 1.13349 1.75031 1.20869 1.00998 0.89475 0.97989 1.22543 1.04334 0.94024 0.94983 1.43921 1.32196 1.11270 1.20684 1.22195 0.92045 1.01295 0.86491 1.21785 1.05338 0.91944 1.04017 1.23311 0.89969 0.99284 0.89965 1.67954 1.15377 1.21266 1.09045 1.21918 0.98233 0.82088 0.95347 1.70920 1.19333 1.12899 1.11502 0.92925 0.90950 0.95897 0.91814 0.93130 0.93109 0.92770 0.91565 0.92586 0.90890 0.92106 0.73966 0.78433 0.80789 0.81876 0.80168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.97 55.49 0.78 -27.24 16 2 C 0.04 1.02 5.27 -17.43 -0.09 0.92 16 3 Si 0.88 23.07 24.32 -169.99 -4.13 18.94 16 4 H -0.29 -7.32 6.52 56.52 0.37 -6.95 16 5 H -0.31 -8.30 7.11 56.52 0.40 -7.90 16 6 H -0.27 -6.94 6.75 56.52 0.38 -6.55 16 7 C -0.26 -7.16 7.42 -15.06 -0.11 -7.27 16 8 H 0.09 2.69 6.07 -52.48 -0.32 2.37 16 9 N -0.60 -13.94 2.71 -164.51 -0.45 -14.38 16 10 C 0.13 2.72 4.19 -3.71 -0.02 2.71 16 11 C -0.14 -2.40 6.08 -26.61 -0.16 -2.56 16 12 C -0.11 -1.67 5.88 -26.69 -0.16 -1.83 16 13 C -0.13 -2.06 5.40 -26.39 -0.14 -2.20 16 14 C 0.16 3.12 3.03 -67.37 -0.20 2.92 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 16 C 0.13 2.61 4.44 -4.04 -0.02 2.60 16 17 N -0.67 -14.34 3.84 -61.33 -0.24 -14.57 16 18 C 0.59 12.66 7.82 -12.45 -0.10 12.56 16 19 O -0.56 -12.37 16.87 5.28 0.09 -12.28 16 20 C 0.04 0.83 6.94 -83.43 -0.58 0.25 16 21 C -0.02 -0.38 11.47 -16.25 -0.19 -0.56 16 22 N -0.40 -5.81 2.93 -64.13 -0.19 -6.00 16 23 C 0.11 0.99 11.05 -16.38 -0.18 0.81 16 24 C -0.21 -1.49 10.06 -39.79 -0.40 -1.89 16 25 C 0.16 1.64 11.27 -17.07 -0.19 1.44 16 26 N -0.43 -6.90 10.48 -13.67 -0.14 -7.04 16 27 C 0.37 6.86 8.90 -322.42 -2.87 3.99 16 28 N -0.42 -9.11 11.01 -11.03 -0.12 -9.23 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.07 1.74 4.64 -51.93 -0.24 1.50 16 31 H 0.02 0.50 7.05 -51.93 -0.37 0.13 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.56 7.42 -51.93 -0.39 1.18 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.42 9.74 7.09 -40.82 -0.29 9.45 16 41 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 42 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.16 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -36.80 353.67 -10.35 -47.14 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.86 Total: 7.45 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -5.41 Total: 11.88 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -0.36 Total: -78.47 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.13 Total: 18.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.80 -10.35 -47.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024531339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.132 kcal (2) G-P(sol) polarization free energy of solvation -36.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds