Wall clock time and date at job start Tue Mar 31 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48511 * 109.47034 * 268.90305 * 3 2 1 5 5 H 1.48497 * 109.47278 * 28.90247 * 3 2 1 6 6 H 1.48494 * 109.47472 * 148.90549 * 3 2 1 7 7 C 1.38810 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00075 * 342.97244 * 7 2 1 9 9 N 1.36938 * 120.00164 * 162.69555 * 7 2 1 10 10 C 1.46928 * 120.62921 * 329.11801 * 9 7 2 11 11 C 1.53193 * 108.77362 * 233.58428 * 10 9 7 12 12 C 1.53040 * 109.31555 * 305.36867 * 11 10 9 13 13 C 1.53033 * 109.54083 * 61.36461 * 12 11 10 14 14 C 1.46925 * 120.63154 * 148.84139 * 9 7 2 15 15 H 1.09002 * 109.58292 * 246.20119 * 14 9 7 16 16 C 1.53005 * 109.58679 * 6.62382 * 14 9 7 17 17 N 1.46493 * 109.47234 * 299.77695 * 16 14 9 18 18 C 1.34772 * 120.00396 * 180.02562 * 17 16 14 19 19 O 1.21598 * 119.99719 * 359.97438 * 18 17 16 20 20 C 1.47582 * 120.00374 * 180.02562 * 18 17 16 21 21 C 1.36476 * 125.91654 * 179.97438 * 20 18 17 22 22 N 1.36197 * 107.01025 * 179.97438 * 21 20 18 23 23 C 1.36679 * 132.44959 * 180.02562 * 22 21 20 24 24 C 1.35475 * 119.09933 * 179.97438 * 23 22 21 25 25 C 1.40298 * 119.36264 * 359.97438 * 24 23 22 26 26 N 1.31142 * 120.41354 * 0.02562 * 25 24 23 27 27 C 1.34285 * 120.94234 * 359.97438 * 26 25 24 28 28 N 1.32208 * 131.65412 * 180.33563 * 27 26 25 29 29 H 0.96995 * 120.00366 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58587 * 353.36723 * 10 9 7 31 31 H 1.09001 * 109.58524 * 113.65929 * 10 9 7 32 32 H 1.09007 * 109.49814 * 65.31840 * 11 10 9 33 33 H 1.09001 * 109.49738 * 185.37777 * 11 10 9 34 34 H 1.09005 * 109.46211 * 181.38932 * 12 11 10 35 35 H 1.08997 * 109.45513 * 301.35590 * 12 11 10 36 36 H 1.09000 * 109.50202 * 58.58857 * 13 12 11 37 37 H 1.08996 * 109.50035 * 178.65714 * 13 12 11 38 38 H 1.08998 * 109.47001 * 59.77584 * 16 14 9 39 39 H 1.09001 * 109.47034 * 179.77733 * 16 14 9 40 40 H 0.97004 * 119.99852 * 359.97438 * 17 16 14 41 41 H 1.07995 * 126.50063 * 0.02562 * 21 20 18 42 42 H 1.07997 * 120.44423 * 359.95725 * 23 22 21 43 43 H 1.08005 * 120.31277 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.79205 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5209 2.0330 -1.3999 5 1 1.4362 2.6593 0.6767 6 1 3.5359 1.4470 0.7230 7 6 2.0102 -1.2021 0.0005 8 1 1.5057 -2.1169 0.2748 9 7 3.3331 -1.2291 -0.3522 10 6 3.8678 -0.2680 -1.3264 11 6 4.5821 -1.0404 -2.4400 12 6 5.6366 -1.9610 -1.8214 13 6 4.9549 -2.9699 -0.8945 14 6 4.2460 -2.2158 0.2408 15 1 4.9834 -1.7053 0.8603 16 6 3.4489 -3.2032 1.0957 17 7 2.7611 -2.4776 2.1664 18 6 1.9939 -3.1471 3.0494 19 8 1.8724 -4.3535 2.9570 20 6 1.3005 -2.4161 4.1277 21 6 0.4974 -2.9696 5.0822 22 7 0.0629 -1.9521 5.8765 23 6 -0.7532 -1.9212 6.9724 24 6 -1.0114 -0.7323 7.5683 25 6 -0.4361 0.4370 7.0486 26 7 0.3439 0.3819 5.9958 27 6 0.6095 -0.7887 5.3938 28 7 1.3557 -1.0876 4.3442 29 1 -0.4850 0.8400 -0.0004 30 1 3.0504 0.3141 -1.7518 31 1 4.5732 0.3997 -0.8316 32 1 3.8562 -1.6378 -2.9917 33 1 5.0652 -0.3371 -3.1183 34 1 6.1633 -2.4936 -2.6134 35 1 6.3478 -1.3654 -1.2492 36 1 4.2255 -3.5492 -1.4607 37 1 5.7037 -3.6404 -0.4728 38 1 2.7145 -3.7131 0.4723 39 1 4.1274 -3.9366 1.5315 40 1 2.8584 -1.5153 2.2404 41 1 0.2532 -4.0163 5.1883 42 1 -1.1866 -2.8322 7.3578 43 1 -1.6532 -0.6853 8.4357 44 1 -0.6369 1.3885 7.5185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024531339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:59 Heat of formation + Delta-G solvation = 79.297033 kcal Electronic energy + Delta-G solvation = -28533.008935 eV Core-core repulsion = 24680.054059 eV Total energy + Delta-G solvation = -3852.954875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.07976 -40.81378 -39.60505 -38.84706 -35.87625 -35.60622 -34.86624 -32.70911 -32.47499 -31.80792 -30.48823 -28.00678 -26.82657 -25.66027 -24.31464 -24.28763 -23.84135 -22.19426 -21.37682 -20.82240 -19.61391 -18.67024 -18.56182 -17.82423 -17.51004 -17.29964 -16.83852 -16.71619 -16.63514 -15.53582 -15.31095 -15.27628 -15.18800 -15.11970 -14.80855 -14.76684 -14.31439 -13.86948 -13.74122 -13.67155 -13.43430 -13.22341 -13.00053 -12.82783 -12.56595 -12.29673 -11.97368 -11.76260 -11.70570 -11.57140 -11.37271 -11.21258 -11.04924 -10.83048 -10.61468 -10.24642 -9.86480 -9.36191 -8.78566 -8.10254 -5.44596 -0.48896 -0.00657 0.95150 1.26144 1.27323 1.41248 1.46433 2.16672 2.34029 2.44195 2.57690 2.63836 3.11572 3.30898 3.36986 3.54718 3.67671 3.90350 4.00467 4.07984 4.13803 4.18333 4.32108 4.33806 4.43089 4.51361 4.58796 4.62818 4.68366 4.70445 4.87294 4.94395 5.06625 5.12690 5.17261 5.21985 5.26249 5.31190 5.31980 5.49919 5.59423 5.64345 5.94641 6.23638 6.36730 6.59402 6.85769 6.96983 7.21289 7.67827 8.07648 9.09148 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.004084 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.200106 B = 6853.937093 C = 8089.458439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.024 4.024 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.326 1.326 6 H -0.264 1.264 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.618 5.618 10 C 0.118 3.882 11 C -0.129 4.129 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.159 3.841 15 H 0.048 0.952 16 C 0.136 3.864 17 N -0.679 5.679 18 C 0.591 3.409 19 O -0.578 6.578 20 C -0.011 4.011 21 C -0.004 4.004 22 N -0.404 5.404 23 C 0.101 3.899 24 C -0.186 4.186 25 C 0.182 3.818 26 N -0.493 5.493 27 C 0.358 3.642 28 N -0.492 5.492 29 H 0.254 0.746 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.411 0.589 41 H 0.230 0.770 42 H 0.226 0.774 43 H 0.225 0.775 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -4.182 15.904 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.219 4.219 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.256 1.256 6 H -0.188 1.188 7 C -0.354 4.354 8 H 0.075 0.925 9 N -0.344 5.344 10 C -0.007 4.007 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.054 3.946 15 H 0.065 0.935 16 C 0.012 3.988 17 N -0.327 5.327 18 C 0.377 3.623 19 O -0.459 6.459 20 C -0.143 4.143 21 C -0.140 4.140 22 N -0.081 5.081 23 C -0.028 4.028 24 C -0.208 4.208 25 C -0.004 4.004 26 N -0.206 5.206 27 C 0.008 3.992 28 N -0.216 5.216 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.242 0.758 43 H 0.241 0.759 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.333 -3.802 14.765 15.607 hybrid contribution -1.018 0.525 0.356 1.199 sum 2.315 -3.277 15.121 15.644 Atomic orbital electron populations 1.69924 1.07423 1.26352 1.56464 1.25798 0.95511 1.00250 1.00323 0.86065 0.78495 0.81224 0.77168 1.20191 1.25571 1.18835 1.18671 0.84834 0.92810 1.39040 0.92522 1.44567 1.05668 1.37566 1.46599 1.21433 0.96350 0.92186 0.90719 1.21921 0.98329 0.99204 0.97318 1.21375 0.96809 0.96992 0.98907 1.21959 0.99510 0.97969 0.96569 1.21102 0.90932 0.89334 0.93280 0.93480 1.21413 0.95146 0.94379 0.87842 1.45883 1.46772 1.12292 1.27717 1.17058 0.78658 0.85764 0.80847 1.90685 1.65522 1.13877 1.75858 1.20748 1.04074 0.89811 0.99708 1.22865 1.02344 0.95187 0.93563 1.44019 1.32666 1.09595 1.21807 1.23342 0.90557 1.04384 0.84482 1.22498 1.03957 0.89860 1.04470 1.24377 0.86387 1.02457 0.87227 1.68037 1.19391 1.20863 1.12334 1.21996 0.98207 0.83846 0.95170 1.70685 1.22499 1.13976 1.14438 0.93734 0.93733 0.95274 0.93049 0.90492 0.89906 0.91636 0.92681 0.89128 0.93572 0.89479 0.75276 0.75352 0.75795 0.75874 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.20 13.97 21.65 0.30 -62.89 16 2 C -0.02 -1.46 5.27 84.86 0.45 -1.01 16 3 Si 0.94 50.03 24.32 68.60 1.67 51.70 16 4 H -0.28 -13.71 6.52 99.48 0.65 -13.06 16 5 H -0.33 -18.28 7.11 99.48 0.71 -17.57 16 6 H -0.26 -13.49 6.75 99.48 0.67 -12.82 16 7 C -0.22 -12.74 7.42 84.03 0.62 -12.12 16 8 H 0.06 3.61 6.07 -2.91 -0.02 3.59 16 9 N -0.62 -29.00 2.71 -674.40 -1.83 -30.83 16 10 C 0.12 5.05 4.19 86.36 0.36 5.41 16 11 C -0.13 -4.28 6.08 30.67 0.19 -4.09 16 12 C -0.10 -2.81 5.88 30.62 0.18 -2.63 16 13 C -0.12 -3.62 5.40 30.82 0.17 -3.45 16 14 C 0.16 6.06 3.03 45.12 0.14 6.19 16 15 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.14 5.47 4.44 86.38 0.38 5.85 16 17 N -0.68 -31.01 3.84 -466.22 -1.79 -32.80 16 18 C 0.59 26.94 7.82 86.71 0.68 27.61 16 19 O -0.58 -26.85 16.87 -4.03 -0.07 -26.91 16 20 C -0.01 -0.46 6.94 40.76 0.28 -0.18 16 21 C 0.00 -0.11 11.47 83.60 0.96 0.85 16 22 N -0.40 -11.34 2.93 -356.82 -1.05 -12.39 16 23 C 0.10 1.41 11.05 83.30 0.92 2.33 16 24 C -0.19 -1.72 10.06 22.13 0.22 -1.49 16 25 C 0.18 3.08 11.27 85.30 0.96 4.04 16 26 N -0.49 -16.06 10.48 -197.17 -2.07 -18.13 16 27 C 0.36 13.64 8.90 261.35 2.33 15.97 16 28 N -0.49 -22.78 11.01 -188.82 -2.08 -24.86 16 29 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 30 H 0.04 2.15 4.64 -2.39 -0.01 2.14 16 31 H 0.03 1.22 7.05 -2.39 -0.02 1.21 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 1.81 8.14 -2.38 -0.02 1.80 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 2.09 7.42 -2.39 -0.02 2.07 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.41 20.45 7.09 -92.71 -0.66 19.79 16 41 H 0.23 5.43 8.06 -2.91 -0.02 5.40 16 42 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.22 -0.59 8.06 -2.91 -0.02 -0.62 16 44 H 0.22 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -92.11 353.67 2.21 -89.90 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.29 Total: 23.94 kcal Atomic # 6 Polarization: 34.44 SS G_CDS: 8.84 Total: 43.27 kcal Atomic # 7 Polarization: -173.39 SS G_CDS: -8.51 Total: -181.90 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.07 Total: -26.91 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.67 Total: 51.70 kcal Total: -92.11 2.21 -89.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024531339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.196 kcal (2) G-P(sol) polarization free energy of solvation -92.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds