Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99704 * 2 1 4 4 H 1.48504 * 109.46937 * 240.00588 * 3 2 1 5 5 H 1.48506 * 109.46830 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47305 * 120.00088 * 3 2 1 7 7 C 1.38811 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00328 * 169.11893 * 7 2 1 9 9 N 1.36935 * 119.99642 * 348.83846 * 7 2 1 10 10 C 1.46924 * 120.63286 * 328.91296 * 9 7 2 11 11 C 1.53193 * 108.77652 * 233.58592 * 10 9 7 12 12 C 1.53047 * 109.31228 * 305.36225 * 11 10 9 13 13 C 1.53043 * 109.53617 * 61.36220 * 12 11 10 14 14 C 1.46924 * 120.63090 * 148.62827 * 9 7 2 15 15 H 1.08993 * 109.59280 * 246.20418 * 14 9 7 16 16 C 1.53007 * 109.58280 * 6.63360 * 14 9 7 17 17 N 1.46498 * 109.46872 * 300.45262 * 16 14 9 18 18 C 1.34777 * 119.99659 * 180.02562 * 17 16 14 19 19 O 1.21714 * 120.00324 * 359.97438 * 18 17 16 20 20 C 1.46591 * 119.99463 * 180.02562 * 18 17 16 21 21 C 1.40643 * 126.54205 * 0.02562 * 20 18 17 22 22 N 1.30699 * 108.72845 * 179.97438 * 21 20 18 23 23 N 1.39907 * 109.51640 * 0.02562 * 22 21 20 24 24 C 1.36315 * 132.16079 * 180.02562 * 23 22 21 25 25 C 1.35751 * 119.16013 * 179.97438 * 24 23 22 26 26 C 1.39960 * 119.35516 * 0.02562 * 25 24 23 27 27 N 1.31504 * 120.10682 * 0.02562 * 26 25 24 28 28 C 1.33391 * 120.85110 * 359.67453 * 27 26 25 29 29 H 0.96996 * 120.00470 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58825 * 353.37396 * 10 9 7 31 31 H 1.09008 * 109.58869 * 113.65119 * 10 9 7 32 32 H 1.08991 * 109.49798 * 65.31228 * 11 10 9 33 33 H 1.09002 * 109.49764 * 185.38609 * 11 10 9 34 34 H 1.08991 * 109.46199 * 181.38519 * 12 11 10 35 35 H 1.09005 * 109.46024 * 301.36216 * 12 11 10 36 36 H 1.09002 * 109.49136 * 58.58746 * 13 12 11 37 37 H 1.08997 * 109.49932 * 178.65081 * 13 12 11 38 38 H 1.08994 * 109.47242 * 60.45779 * 16 14 9 39 39 H 1.09000 * 109.46823 * 180.45805 * 16 14 9 40 40 H 0.97005 * 120.00040 * 0.02562 * 17 16 14 41 41 H 1.08002 * 125.63426 * 359.94647 * 21 20 18 42 42 H 1.08008 * 120.41793 * 359.94902 * 24 23 22 43 43 H 1.08005 * 120.32117 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.95067 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0757 -1.2103 -0.1771 9 7 1.3452 -2.3769 0.2285 10 6 0.1622 -2.4099 1.0992 11 6 0.3742 -3.4758 2.1789 12 6 0.7011 -4.8139 1.5118 13 6 1.9942 -4.6806 0.7041 14 6 1.7972 -3.6272 -0.3967 15 1 1.0462 -3.9731 -1.1069 16 6 3.1224 -3.3876 -1.1230 17 7 2.9376 -2.3586 -2.1492 18 6 3.9768 -1.9816 -2.9202 19 8 5.0689 -2.4957 -2.7636 20 6 3.7921 -0.9515 -3.9467 21 6 2.5984 -0.2693 -4.2431 22 7 2.8267 0.5723 -5.2166 23 7 4.1681 0.4854 -5.6047 24 6 4.8893 1.1414 -6.5574 25 6 6.2047 0.8441 -6.7128 26 6 6.7899 -0.1279 -5.8932 27 7 6.0683 -0.7449 -4.9833 28 6 4.7768 -0.4535 -4.8213 29 1 -0.4850 0.8400 0.0004 30 1 0.0269 -1.4357 1.5690 31 1 -0.7200 -2.6559 0.5080 32 1 1.2005 -3.1798 2.8249 33 1 -0.5340 -3.5774 2.7731 34 1 0.8282 -5.5796 2.2770 35 1 -0.1147 -5.0970 0.8467 36 1 2.8053 -4.3732 1.3642 37 1 2.2393 -5.6401 0.2488 38 1 3.8743 -3.0560 -0.4070 39 1 3.4519 -4.3143 -1.5929 40 1 2.0674 -1.9486 -2.2738 41 1 1.6498 -0.4169 -3.7483 42 1 4.4200 1.8880 -7.1811 43 1 6.7939 1.3527 -7.4615 44 1 7.8355 -0.3722 -6.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024589967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = 109.323366 kcal Electronic energy + Delta-G solvation = -28663.811988 eV Core-core repulsion = 24812.159152 eV Total energy + Delta-G solvation = -3851.652836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39341 -38.97232 -38.02329 -37.39608 -34.09414 -33.93381 -33.01799 -31.31410 -30.70792 -29.86692 -29.20232 -26.03218 -24.95641 -24.88002 -23.30850 -22.28800 -22.04691 -20.64819 -19.74056 -19.08057 -18.30162 -17.35620 -16.96185 -16.25756 -16.16043 -15.66075 -15.46357 -14.97129 -14.36515 -14.15956 -13.96577 -13.54047 -13.49680 -13.34550 -13.15343 -13.00614 -12.76792 -12.66319 -12.37216 -11.93910 -11.70259 -11.45447 -11.24619 -11.08158 -10.88656 -10.74386 -10.49805 -10.25704 -10.10005 -9.95195 -9.84893 -9.65575 -9.48310 -9.39258 -9.11755 -8.53059 -8.16981 -7.81088 -6.61353 -5.80702 -3.28033 0.35357 0.72393 1.92990 2.34406 3.19626 3.36530 3.41470 3.46474 3.77468 3.82228 4.09971 4.18765 4.29375 4.46389 4.68641 4.95515 5.15785 5.23913 5.29650 5.32648 5.35996 5.58726 5.68292 5.72292 5.80695 5.89504 6.04025 6.14005 6.22533 6.24837 6.37610 6.40826 6.46862 6.51176 6.65460 6.76479 6.78384 6.91109 7.05467 7.32800 7.35642 7.43850 7.58854 7.71990 7.83457 8.44124 8.47878 9.10187 9.20696 9.81207 10.39203 11.25447 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.004128 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.811999 B = 6780.901059 C = 7910.226635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.139 3.861 17 N -0.693 5.693 18 C 0.588 3.412 19 O -0.553 6.553 20 C -0.268 4.268 21 C 0.137 3.863 22 N -0.314 5.314 23 N -0.311 5.311 24 C 0.165 3.835 25 C -0.229 4.229 26 C 0.174 3.826 27 N -0.436 5.436 28 C 0.307 3.693 29 H 0.254 0.746 30 H 0.088 0.912 31 H 0.018 0.982 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.411 0.589 41 H 0.210 0.790 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 -0.838 -11.488 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.344 5.344 18 C 0.374 3.626 19 O -0.433 6.433 20 C -0.284 4.284 21 C -0.044 4.044 22 N -0.136 5.136 23 N -0.080 5.080 24 C 0.029 3.971 25 C -0.254 4.254 26 C -0.009 4.009 27 N -0.146 5.146 28 C 0.076 3.924 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.249 0.751 41 H 0.227 0.773 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.930 -0.866 -11.416 13.383 hybrid contribution -0.006 1.381 0.005 1.381 sum 6.924 0.515 -11.411 13.357 Atomic orbital electron populations 1.69963 1.04994 1.25471 1.54221 1.25032 0.95168 0.97809 1.00963 0.86567 0.79054 0.84008 0.78451 1.20851 1.21665 1.21079 1.19207 0.91436 0.83603 1.43290 0.91159 1.44094 1.32410 1.02824 1.51973 1.20795 0.87890 0.97299 0.89343 1.22200 0.99727 0.96753 0.99672 1.21365 0.97405 0.97363 0.98368 1.22013 0.97926 0.98186 0.98566 1.20832 0.93070 0.88509 0.92279 0.94972 1.21228 0.98035 0.89641 0.89608 1.45738 1.13047 1.40850 1.34765 1.16710 0.84493 0.81111 0.80283 1.90769 1.25085 1.56614 1.70808 1.19659 0.91822 1.10000 1.06902 1.24365 0.99296 0.89478 0.91221 1.77618 0.88777 1.26619 1.20539 1.47084 1.10062 1.26776 1.24057 1.22089 0.91223 0.94728 0.89109 1.21861 0.94070 1.03867 1.05553 1.23568 1.00569 0.89063 0.87718 1.68327 1.02231 1.25054 1.19003 1.20382 0.89665 0.89770 0.92609 0.93584 0.89415 0.96427 0.92894 0.93633 0.93814 0.92917 0.92083 0.93077 0.91709 0.92706 0.75113 0.77331 0.80258 0.81488 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 11.06 55.49 0.61 -23.52 16 2 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 3 Si 0.89 21.53 29.57 -169.99 -5.03 16.51 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.13 6.92 -15.06 -0.10 -6.24 16 8 H 0.07 1.84 5.87 -52.49 -0.31 1.53 16 9 N -0.59 -13.44 2.97 -164.52 -0.49 -13.93 16 10 C 0.17 3.88 5.25 -3.71 -0.02 3.86 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 12 C -0.11 -1.78 5.88 -26.68 -0.16 -1.93 16 13 C -0.13 -2.17 5.40 -26.38 -0.14 -2.31 16 14 C 0.16 3.12 3.04 -67.37 -0.20 2.91 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C 0.14 2.72 4.44 -4.04 -0.02 2.70 16 17 N -0.69 -13.99 3.81 -61.64 -0.23 -14.23 16 18 C 0.59 12.53 7.78 -12.89 -0.10 12.43 16 19 O -0.55 -13.23 16.74 5.18 0.09 -13.14 16 20 C -0.27 -5.22 6.17 -104.65 -0.65 -5.87 16 21 C 0.14 2.41 11.44 -17.13 -0.20 2.22 16 22 N -0.31 -5.29 12.58 30.77 0.39 -4.91 16 23 N -0.31 -4.75 3.86 -11.97 -0.05 -4.79 16 24 C 0.16 1.62 11.29 -16.45 -0.19 1.44 16 25 C -0.23 -1.70 10.05 -39.83 -0.40 -2.10 16 26 C 0.17 1.77 11.28 -17.05 -0.19 1.58 16 27 N -0.44 -7.13 10.26 -12.00 -0.12 -7.25 16 28 C 0.31 5.50 7.74 -155.83 -1.21 4.29 16 29 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.09 2.24 6.10 -51.93 -0.32 1.92 16 31 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.39 7.46 -51.93 -0.39 1.00 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.41 8.35 6.25 -40.82 -0.25 8.10 16 41 H 0.21 3.34 7.46 -52.49 -0.39 2.95 16 42 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 44 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -33.72 358.87 -9.11 -42.84 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.87 Total: 6.76 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -3.82 Total: 10.27 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.11 Total: -68.63 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.72 -9.11 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024589967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.159 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds