Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48494 * 109.47494 * 240.00528 * 3 2 1 5 5 H 1.48503 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47097 * 120.00196 * 3 2 1 7 7 C 1.38817 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00098 * 194.19112 * 7 2 1 9 9 N 1.36945 * 119.99790 * 14.19578 * 7 2 1 10 10 C 1.46924 * 120.62916 * 30.87249 * 9 7 2 11 11 C 1.53194 * 108.77393 * 126.39713 * 10 9 7 12 12 C 1.53040 * 109.31508 * 54.63203 * 11 10 9 13 13 C 1.53041 * 109.53529 * 298.63630 * 12 11 10 14 14 C 1.46920 * 120.62857 * 210.87760 * 9 7 2 15 15 H 1.09002 * 109.70910 * 113.74940 * 14 9 7 16 16 C 1.52997 * 109.58644 * 353.39099 * 14 9 7 17 17 N 1.46497 * 109.47451 * 60.67566 * 16 14 9 18 18 C 1.34773 * 120.00500 * 180.02562 * 17 16 14 19 19 O 1.21756 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.46189 * 120.00226 * 179.97438 * 18 17 16 21 21 C 1.38723 * 126.76483 * 179.97438 * 20 18 17 22 22 N 1.32282 * 108.17812 * 179.97438 * 21 20 18 23 23 C 1.33134 * 109.71475 * 0.02562 * 22 21 20 24 24 C 1.40624 * 132.28757 * 179.97438 * 23 22 21 25 25 C 1.36307 * 119.22369 * 180.02562 * 24 23 22 26 26 C 1.39877 * 120.11989 * 0.02562 * 25 24 23 27 27 N 1.30803 * 120.78038 * 359.97438 * 26 25 24 28 28 N 1.36645 * 108.62703 * 0.02562 * 23 22 21 29 29 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.59012 * 6.60539 * 10 9 7 31 31 H 1.09001 * 109.70045 * 246.25074 * 10 9 7 32 32 H 1.09000 * 109.49646 * 294.68072 * 11 10 9 33 33 H 1.09000 * 109.49970 * 174.58602 * 11 10 9 34 34 H 1.08994 * 109.46272 * 178.61785 * 12 11 10 35 35 H 1.08997 * 109.44989 * 58.64882 * 12 11 10 36 36 H 1.08996 * 109.49823 * 301.41246 * 13 12 11 37 37 H 1.08999 * 109.52248 * 181.32930 * 13 12 11 38 38 H 1.09001 * 109.47356 * 300.66958 * 16 14 9 39 39 H 1.09005 * 109.47246 * 180.67209 * 16 14 9 40 40 H 0.97010 * 119.99730 * 359.97438 * 17 16 14 41 41 H 1.08001 * 125.91112 * 359.96947 * 21 20 18 42 42 H 1.07998 * 120.38939 * 0.02562 * 24 23 22 43 43 H 1.07998 * 119.94300 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.61383 * 179.72268 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0654 -1.2165 0.2287 9 7 1.3569 -2.3699 -0.2919 10 6 0.2121 -2.3774 -1.2129 11 6 0.4715 -3.4111 -2.3134 12 6 0.7718 -4.7681 -1.6727 13 6 2.0291 -4.6583 -0.8071 14 6 1.7873 -3.6389 0.3106 15 1 1.0119 -4.0090 0.9813 16 6 3.0826 -3.4209 1.0950 17 7 2.8489 -2.4451 2.1624 18 6 3.8555 -2.0943 2.9871 19 8 4.9591 -2.5888 2.8454 20 6 3.6223 -1.1201 4.0519 21 6 4.5505 -0.6608 4.9749 22 7 3.9483 0.2108 5.7670 23 6 2.6737 0.3406 5.4051 24 6 1.6215 1.1244 5.9113 25 6 0.3935 1.0487 5.3245 26 6 0.1885 0.1992 4.2324 27 7 1.1655 -0.5309 3.7596 28 7 2.4377 -0.4783 4.3370 29 1 -0.4850 0.8400 0.0004 30 1 0.0956 -1.3899 -1.6591 31 1 -0.6949 -2.6421 -0.6694 32 1 1.3243 -3.0960 -2.9147 33 1 -0.4105 -3.4957 -2.9483 34 1 0.9326 -5.5109 -2.4540 35 1 -0.0713 -5.0708 -1.0518 36 1 2.8671 -4.3315 -1.4226 37 1 2.2562 -5.6305 -0.3697 38 1 3.8555 -3.0468 0.4235 39 1 3.4067 -4.3658 1.5312 40 1 1.9698 -2.0508 2.2751 41 1 5.5857 -0.9627 5.0361 42 1 1.7845 1.7785 6.7550 43 1 -0.4227 1.6458 5.7036 44 1 -0.7889 0.1423 3.7766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024696107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = 109.616491 kcal Electronic energy + Delta-G solvation = -29442.557182 eV Core-core repulsion = 25590.917057 eV Total energy + Delta-G solvation = -3851.640125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38314 -39.06187 -37.97316 -37.47547 -34.23525 -33.55298 -33.07154 -31.15779 -30.77204 -29.93427 -29.33423 -26.15386 -25.06014 -24.47483 -23.39968 -22.18705 -21.86509 -20.60856 -20.17365 -19.17091 -18.29691 -17.40544 -16.64459 -16.10910 -16.06300 -15.66238 -15.49585 -15.18379 -14.27088 -14.04818 -13.83851 -13.66926 -13.63223 -13.47243 -13.30546 -12.88195 -12.83231 -12.52398 -12.41706 -12.06074 -11.76322 -11.23305 -11.07445 -11.05315 -10.97566 -10.81558 -10.56372 -10.32658 -10.17520 -10.01980 -9.94594 -9.68646 -9.49431 -9.35811 -9.33130 -8.59928 -8.34672 -7.99918 -6.66667 -5.86064 -3.30030 0.43970 1.01568 1.91990 2.47873 3.28875 3.31877 3.35061 3.39859 3.68694 3.82589 4.06237 4.19954 4.40784 4.53758 4.85618 5.20008 5.23771 5.31255 5.36092 5.40099 5.51260 5.59091 5.63467 5.67827 5.77793 5.81160 5.95921 6.04913 6.14000 6.25845 6.33436 6.35215 6.40372 6.52674 6.58575 6.69603 6.71844 6.84427 6.96560 7.15285 7.36195 7.59337 7.62511 7.70164 7.77555 8.28111 8.38945 8.82062 9.15480 9.76508 10.34429 11.20864 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.005390 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.302592 B = 5194.002882 C = 6124.400433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.019 3.981 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.245 4.245 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.161 3.839 15 H 0.031 0.969 16 C 0.132 3.868 17 N -0.683 5.683 18 C 0.585 3.415 19 O -0.555 6.555 20 C -0.049 4.049 21 C 0.094 3.906 22 N -0.472 5.472 23 C 0.173 3.827 24 C -0.015 4.015 25 C -0.169 4.169 26 C 0.134 3.866 27 N -0.227 5.227 28 N -0.250 5.250 29 H 0.251 0.749 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.424 0.576 41 H 0.199 0.801 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -1.612 7.829 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.375 4.375 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.050 3.950 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.008 3.992 17 N -0.335 5.335 18 C 0.370 3.630 19 O -0.435 6.435 20 C -0.169 4.169 21 C -0.067 4.067 22 N -0.193 5.193 23 C -0.071 4.071 24 C -0.043 4.043 25 C -0.195 4.195 26 C -0.058 4.058 27 N -0.037 5.037 28 N -0.021 5.021 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.266 0.734 41 H 0.216 0.784 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.786 -2.123 7.533 8.027 hybrid contribution -0.492 1.482 -0.140 1.568 sum -2.277 -0.641 7.393 7.762 Atomic orbital electron populations 1.69992 1.04821 1.25091 1.54030 1.24876 0.95020 0.97452 1.00624 0.86705 0.79312 0.84459 0.78395 1.20841 1.21570 1.21403 1.19075 0.91877 0.84073 1.42436 0.91690 1.44039 1.35824 1.01840 1.49279 1.20738 0.88382 0.97521 0.88410 1.22198 0.99942 0.96579 0.99635 1.21355 0.97534 0.97382 0.98177 1.21937 0.98247 0.98210 0.98270 1.20720 0.93112 0.88649 0.92158 0.95187 1.21364 0.98550 0.90673 0.88610 1.46093 1.14510 1.42949 1.29921 1.16558 0.85073 0.80751 0.80617 1.90799 1.23531 1.55999 1.73142 1.21566 0.83685 1.06042 1.05624 1.23094 0.99484 0.93764 0.90397 1.70416 1.02195 1.19366 1.27310 1.21220 0.94765 0.98957 0.92188 1.20551 0.89157 0.95495 0.99113 1.21583 0.98428 1.01707 0.97764 1.24268 0.98304 0.90489 0.92779 1.76015 0.87404 1.22392 1.17888 1.47072 1.07193 1.27228 1.20579 0.93861 0.89736 0.96418 0.92834 0.93567 0.93713 0.92912 0.92014 0.93005 0.91301 0.92401 0.73444 0.78396 0.82191 0.82522 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.10 11.23 55.49 0.62 -22.47 16 2 C 0.02 0.50 4.96 -17.43 -0.09 0.41 16 3 Si 0.88 21.56 29.58 -169.99 -5.03 16.53 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.17 7.01 -15.05 -0.11 -6.27 16 8 H 0.07 1.74 5.85 -52.49 -0.31 1.43 16 9 N -0.59 -13.34 2.97 -164.78 -0.49 -13.83 16 10 C 0.17 3.87 5.27 -3.71 -0.02 3.85 16 11 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 12 C -0.11 -1.74 5.88 -26.69 -0.16 -1.89 16 13 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 14 C 0.16 3.16 3.01 -67.60 -0.20 2.96 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.62 4.42 -4.05 -0.02 2.60 16 17 N -0.68 -14.44 3.85 -61.77 -0.24 -14.67 16 18 C 0.58 12.45 7.77 -13.07 -0.10 12.34 16 19 O -0.55 -12.48 16.91 5.14 0.09 -12.39 16 20 C -0.05 -0.96 7.10 -81.85 -0.58 -1.54 16 21 C 0.09 1.64 11.69 -17.18 -0.20 1.44 16 22 N -0.47 -8.15 11.25 -12.24 -0.14 -8.28 16 23 C 0.17 2.88 7.85 -156.07 -1.23 1.65 16 24 C -0.02 -0.18 10.11 -39.38 -0.40 -0.58 16 25 C -0.17 -1.74 10.03 -39.66 -0.40 -2.13 16 26 C 0.13 1.80 11.30 -17.38 -0.20 1.60 16 27 N -0.23 -4.09 10.04 30.62 0.31 -3.78 16 28 N -0.25 -4.67 4.05 -8.68 -0.04 -4.71 16 29 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.08 2.11 6.19 -51.93 -0.32 1.78 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.47 7.39 -51.93 -0.38 1.08 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.42 9.36 5.42 -40.82 -0.22 9.14 16 41 H 0.20 2.89 8.06 -52.49 -0.42 2.46 16 42 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.20 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -31.19 357.73 -9.38 -40.57 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.86 Total: 8.31 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -4.00 Total: 9.34 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: 0.03 Total: -67.75 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.19 -9.38 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024696107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.185 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds