Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86809 * 119.99870 * 2 1 4 4 H 1.48496 * 109.46870 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46994 * 119.99476 * 3 2 1 6 6 H 1.48498 * 109.46657 * 239.99657 * 3 2 1 7 7 C 1.38816 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99830 * 167.45596 * 7 2 1 9 9 N 1.36931 * 119.99968 * 347.46001 * 7 2 1 10 10 C 1.46934 * 120.63026 * 328.90716 * 9 7 2 11 11 C 1.53192 * 108.77590 * 233.58781 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.36462 * 11 10 9 13 13 C 1.53039 * 109.53935 * 61.36584 * 12 11 10 14 14 C 1.46929 * 120.63434 * 148.62923 * 9 7 2 15 15 H 1.08995 * 109.58417 * 246.20289 * 14 9 7 16 16 C 1.53003 * 109.58135 * 6.62577 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60819 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21586 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.47602 * 119.99691 * 179.97438 * 18 17 16 21 21 C 1.41813 * 119.98524 * 0.02562 * 20 18 17 22 22 C 1.35630 * 119.60080 * 179.97438 * 21 20 18 23 23 C 1.41049 * 119.40744 * 359.97438 * 22 21 20 24 24 N 1.32189 * 133.26444 * 179.97438 * 23 22 21 25 25 N 1.28646 * 109.56799 * 180.02562 * 24 23 22 26 26 C 1.30726 * 110.34271 * 359.97438 * 25 24 23 27 27 N 1.36249 * 107.45409 * 0.02562 * 26 25 24 28 28 C 1.35847 * 133.53274 * 180.27793 * 27 26 25 29 29 H 0.96995 * 120.00534 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58342 * 353.37709 * 10 9 7 31 31 H 1.08998 * 109.58475 * 113.65592 * 10 9 7 32 32 H 1.08996 * 109.49746 * 65.31353 * 11 10 9 33 33 H 1.09001 * 109.49398 * 185.38424 * 11 10 9 34 34 H 1.08999 * 109.45905 * 181.38619 * 12 11 10 35 35 H 1.09006 * 109.46201 * 301.35940 * 12 11 10 36 36 H 1.09000 * 109.49728 * 58.58408 * 13 12 11 37 37 H 1.09004 * 109.49603 * 178.65227 * 13 12 11 38 38 H 1.09000 * 109.47267 * 59.60735 * 16 14 9 39 39 H 1.09005 * 109.46599 * 179.60774 * 16 14 9 40 40 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 41 41 H 1.07999 * 120.19775 * 359.97438 * 21 20 18 42 42 H 1.08004 * 120.29770 * 179.97438 * 22 21 20 43 43 H 1.07998 * 126.27522 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.80378 * 359.96352 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1037 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0709 -1.2133 -0.2026 9 7 1.3502 -2.3738 0.2585 10 6 0.1856 -2.3954 1.1542 11 6 0.4203 -3.4472 2.2429 12 6 0.7334 -4.7938 1.5865 13 6 2.0093 -4.6712 0.7503 14 6 1.7892 -3.6323 -0.3597 15 1 1.0235 -3.9870 -1.0495 16 6 3.0988 -3.4022 -1.1166 17 7 2.8875 -2.4012 -2.1653 18 6 3.9094 -2.0370 -2.9650 19 8 5.0068 -2.5388 -2.8159 20 6 3.6962 -1.0289 -4.0219 21 6 2.4163 -0.4435 -4.1951 22 6 2.2293 0.4825 -5.1684 23 6 3.3132 0.8488 -5.9932 24 7 3.4400 1.6973 -6.9990 25 7 4.6510 1.6735 -7.4326 26 6 5.3642 0.8225 -6.7426 27 7 4.5451 0.2680 -5.8056 28 6 4.7331 -0.6554 -4.8271 29 1 -0.4851 0.8400 -0.0004 30 1 0.0602 -1.4151 1.6141 31 1 -0.7086 -2.6489 0.5848 32 1 1.2600 -3.1431 2.8677 33 1 -0.4753 -3.5409 2.8572 34 1 0.8766 -5.5496 2.3587 35 1 -0.0961 -5.0855 0.9422 36 1 2.8340 -4.3555 1.3892 37 1 2.2449 -5.6367 0.3024 38 1 3.8615 -3.0469 -0.4236 39 1 3.4264 -4.3385 -1.5687 40 1 2.0119 -2.0012 -2.2845 41 1 1.5954 -0.7332 -3.5559 42 1 1.2591 0.9353 -5.3105 43 1 6.4108 0.5998 -6.8885 44 1 5.7077 -1.0998 -4.6885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024709803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 97.371490 kcal Electronic energy + Delta-G solvation = -28592.756181 eV Core-core repulsion = 24740.585073 eV Total energy + Delta-G solvation = -3852.171108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.62620 -39.87232 -38.14510 -37.40436 -34.60337 -34.00687 -33.19327 -31.71626 -30.63829 -30.00164 -29.47621 -26.47561 -25.31020 -24.01563 -23.76800 -22.57190 -22.24903 -20.96443 -20.53903 -19.26819 -18.49580 -17.45088 -17.14632 -16.62084 -16.30670 -15.77420 -15.73489 -15.09508 -14.82298 -14.55224 -14.14081 -13.98251 -13.77782 -13.50072 -13.28886 -12.96803 -12.63296 -12.46449 -12.17746 -12.12830 -11.88443 -11.68321 -11.37108 -11.31370 -11.04526 -10.87952 -10.70917 -10.67460 -10.41174 -10.25465 -10.09611 -9.90562 -9.68836 -9.60375 -9.46094 -8.75419 -8.46761 -8.23245 -6.79121 -5.97099 -3.45145 0.36575 0.84036 2.09525 2.43683 2.94334 3.23200 3.31578 3.34871 3.44511 3.61545 3.97442 4.30499 4.39526 4.43225 4.64321 4.74625 4.79499 5.10607 5.19192 5.28324 5.39271 5.52113 5.54852 5.58260 5.80371 5.84641 5.85893 5.92112 5.96295 6.02192 6.15919 6.18555 6.27735 6.29900 6.49901 6.61126 6.64892 6.65711 6.74767 6.82778 6.92794 7.29183 7.56487 7.64932 7.92410 8.27573 8.39080 8.49331 9.03084 9.64241 10.22728 11.08762 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.003979 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.982548 B = 7035.000238 C = 8108.515951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.034 0.966 16 C 0.134 3.866 17 N -0.678 5.678 18 C 0.561 3.439 19 O -0.558 6.558 20 C -0.137 4.137 21 C -0.055 4.055 22 C -0.087 4.087 23 C 0.206 3.794 24 N -0.295 5.295 25 N -0.254 5.254 26 C 0.118 3.882 27 N -0.396 5.396 28 C 0.126 3.874 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.416 0.584 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.228 0.772 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -6.084 -5.021 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.328 5.328 18 C 0.345 3.655 19 O -0.439 6.439 20 C -0.143 4.143 21 C -0.080 4.080 22 C -0.108 4.108 23 C -0.043 4.043 24 N -0.141 5.141 25 N -0.092 5.092 26 C -0.165 4.165 27 N -0.075 5.075 28 C 0.001 3.999 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.256 0.744 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.244 0.756 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.462 -5.129 -6.110 9.140 hybrid contribution 0.440 0.263 1.117 1.229 sum 4.902 -4.866 -4.992 8.522 Atomic orbital electron populations 1.69961 1.05068 1.25815 1.53172 1.25052 0.95170 0.97933 1.00564 0.86595 0.79200 0.83933 0.78485 1.21418 1.20947 1.20792 1.19140 0.91578 0.83869 1.43969 0.91387 1.44085 1.34199 1.02384 1.50665 1.20785 0.88106 0.97456 0.88933 1.22195 0.99929 0.96611 0.99639 1.21363 0.97422 0.97420 0.98323 1.22010 0.98171 0.98132 0.98375 1.20836 0.92909 0.88708 0.92301 0.94853 1.21384 0.98705 0.90002 0.88903 1.45909 1.13474 1.41610 1.31839 1.17541 0.84946 0.81631 0.81350 1.90754 1.24347 1.56533 1.72250 1.19697 0.93844 1.01559 0.99245 1.21463 0.96773 0.93805 0.95959 1.20204 0.97297 0.99012 0.94319 1.22608 0.86857 0.96079 0.98768 1.74920 1.10508 1.18783 1.09866 1.74139 0.98532 1.15254 1.21300 1.26556 0.99929 0.98714 0.91263 1.43849 1.11521 1.28481 1.23680 1.21689 1.01643 0.89520 0.87061 0.93329 0.89571 0.96288 0.92841 0.93512 0.93688 0.92850 0.92025 0.93010 0.91121 0.92160 0.74426 0.82221 0.81916 0.75558 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.50 11.14 55.49 0.62 -21.88 16 2 C 0.01 0.30 5.00 -17.43 -0.09 0.22 16 3 Si 0.89 19.97 29.57 -169.99 -5.03 14.95 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.26 -5.83 6.98 -15.06 -0.11 -5.93 16 8 H 0.07 1.59 5.87 -52.49 -0.31 1.29 16 9 N -0.59 -12.25 2.97 -164.51 -0.49 -12.74 16 10 C 0.17 3.61 5.26 -3.71 -0.02 3.59 16 11 C -0.14 -2.49 6.08 -26.61 -0.16 -2.66 16 12 C -0.11 -1.62 5.88 -26.69 -0.16 -1.78 16 13 C -0.13 -1.93 5.40 -26.39 -0.14 -2.07 16 14 C 0.16 2.75 3.03 -67.37 -0.20 2.54 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C 0.13 2.21 4.44 -4.04 -0.02 2.20 16 17 N -0.68 -11.24 3.80 -61.32 -0.23 -11.47 16 18 C 0.56 9.18 7.76 -12.44 -0.10 9.08 16 19 O -0.56 -10.23 16.27 5.29 0.09 -10.15 16 20 C -0.14 -1.96 5.84 -105.34 -0.61 -2.57 16 21 C -0.06 -0.76 9.53 -39.15 -0.37 -1.13 16 22 C -0.09 -1.18 10.09 -39.45 -0.40 -1.57 16 23 C 0.21 3.12 7.92 -155.93 -1.23 1.88 16 24 N -0.30 -4.94 12.29 31.20 0.38 -4.56 16 25 N -0.25 -3.91 12.18 29.87 0.36 -3.54 16 26 C 0.12 1.41 12.97 -89.08 -1.16 0.25 16 27 N -0.40 -5.27 2.94 -63.62 -0.19 -5.45 16 28 C 0.13 1.61 10.53 -16.40 -0.17 1.44 16 29 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.09 2.07 6.15 -51.93 -0.32 1.75 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.30 7.41 -51.93 -0.38 0.91 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.42 7.07 5.44 -40.82 -0.22 6.84 16 41 H 0.16 2.14 6.44 -52.49 -0.34 1.80 16 42 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.23 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.19 1.95 7.56 -52.48 -0.40 1.56 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -28.90 355.76 -9.82 -38.71 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.75 Total: 7.29 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -4.94 Total: 3.48 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.46 Total: -59.65 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.90 -9.82 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024709803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.086 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds