Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48502 * 109.47171 * 240.00266 * 3 2 1 5 5 H 1.48501 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47003 * 120.00303 * 3 2 1 7 7 C 1.38817 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99465 * 168.88079 * 7 2 1 9 9 N 1.36926 * 120.00235 * 348.60626 * 7 2 1 10 10 C 1.46933 * 120.63146 * 328.91051 * 9 7 2 11 11 C 1.53195 * 108.77473 * 233.58650 * 10 9 7 12 12 C 1.53043 * 109.31254 * 305.36152 * 11 10 9 13 13 C 1.53044 * 109.53364 * 61.36886 * 12 11 10 14 14 C 1.46925 * 120.63100 * 148.63200 * 9 7 2 15 15 H 1.08998 * 109.58941 * 246.19811 * 14 9 7 16 16 C 1.52998 * 109.58782 * 6.62810 * 14 9 7 17 17 N 1.46499 * 109.46790 * 300.06088 * 16 14 9 18 18 C 1.34775 * 119.99905 * 180.02562 * 17 16 14 19 19 O 1.21547 * 120.00264 * 0.02562 * 18 17 16 20 20 C 1.47881 * 120.00049 * 180.02562 * 18 17 16 21 21 C 1.39906 * 125.69382 * 179.71794 * 20 18 17 22 22 C 1.38583 * 107.58962 * 179.89390 * 21 20 18 23 23 N 1.34113 * 132.34194 * 180.11785 * 22 21 20 24 24 C 1.31134 * 120.84316 * 180.26495 * 23 22 21 25 25 C 1.40343 * 120.29809 * 0.02562 * 24 23 22 26 26 C 1.35458 * 119.46137 * 359.97438 * 25 24 23 27 27 N 1.36678 * 119.14081 * 0.02562 * 26 25 24 28 28 N 1.32367 * 125.69446 * 0.02562 * 20 18 17 29 29 H 0.96999 * 119.99916 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58430 * 353.37019 * 10 9 7 31 31 H 1.08999 * 109.58261 * 113.65848 * 10 9 7 32 32 H 1.08996 * 109.49742 * 65.31539 * 11 10 9 33 33 H 1.08998 * 109.49431 * 185.37559 * 11 10 9 34 34 H 1.08998 * 109.45779 * 181.38389 * 12 11 10 35 35 H 1.08992 * 109.46088 * 301.36039 * 12 11 10 36 36 H 1.09000 * 109.49729 * 58.58694 * 13 12 11 37 37 H 1.09003 * 109.49056 * 178.64509 * 13 12 11 38 38 H 1.08997 * 109.47101 * 60.05734 * 16 14 9 39 39 H 1.08999 * 109.47090 * 180.02562 * 16 14 9 40 40 H 0.96998 * 120.00464 * 359.97438 * 17 16 14 41 41 H 1.07999 * 126.20136 * 359.97438 * 21 20 18 42 42 H 1.07999 * 119.85344 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.27120 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.42713 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0750 -1.2109 -0.1809 9 7 1.3457 -2.3765 0.2332 10 6 0.1658 -2.4076 1.1082 11 6 0.3815 -3.4714 2.1893 12 6 0.7060 -4.8108 1.5238 13 6 1.9963 -4.6792 0.7112 14 6 1.7955 -3.6282 -0.3910 15 1 1.0419 -3.9754 -1.0979 16 6 3.1181 -3.3902 -1.1225 17 7 2.9275 -2.3700 -2.1565 18 6 3.9635 -1.9959 -2.9331 19 8 5.0559 -2.5053 -2.7760 20 6 3.7713 -0.9657 -3.9765 21 6 4.7603 -0.4859 -4.8419 22 6 4.1735 0.4637 -5.6631 23 7 4.6587 1.2225 -6.6568 24 6 3.8870 2.0698 -7.2940 25 6 2.5339 2.1967 -6.9436 26 6 2.0310 1.4362 -5.9418 27 7 2.8555 0.5604 -5.2928 28 7 2.6361 -0.3395 -4.2437 29 1 -0.4850 0.8400 0.0004 30 1 0.0324 -1.4325 1.5766 31 1 -0.7184 -2.6548 0.5206 32 1 1.2103 -3.1742 2.8318 33 1 -0.5244 -3.5715 2.7870 34 1 0.8358 -5.5750 2.2901 35 1 -0.1121 -5.0952 0.8622 36 1 2.8098 -4.3707 1.3678 37 1 2.2397 -5.6398 0.2571 38 1 3.8707 -3.0503 -0.4111 39 1 3.4497 -4.3197 -1.5852 40 1 2.0555 -1.9643 -2.2827 41 1 5.7935 -0.7997 -4.8663 42 1 4.2944 2.6727 -8.0920 43 1 1.8986 2.8944 -7.4690 44 1 0.9920 1.5209 -5.6596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024720703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = 109.401689 kcal Electronic energy + Delta-G solvation = -28486.057951 eV Core-core repulsion = 24634.408512 eV Total energy + Delta-G solvation = -3851.649440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27766 -39.35105 -38.00227 -37.40129 -34.25228 -34.05856 -33.06210 -31.48087 -30.50119 -29.87429 -29.10109 -26.45458 -25.32011 -24.45625 -23.67206 -22.25146 -22.03727 -20.64811 -19.80377 -19.11080 -18.29225 -17.68583 -16.82020 -16.28998 -16.11474 -15.59843 -15.33462 -15.30447 -14.48517 -14.35047 -14.02648 -13.77484 -13.60606 -13.40646 -13.22377 -13.06767 -12.84043 -12.59284 -12.40309 -12.02655 -11.79103 -11.31037 -11.24806 -11.16048 -10.93429 -10.77544 -10.55750 -10.30765 -10.14797 -10.00162 -9.98874 -9.81032 -9.53831 -9.49410 -9.35566 -8.59766 -8.27550 -7.96301 -6.64574 -5.83627 -3.30634 0.41045 0.72995 1.96220 2.02768 3.29549 3.34201 3.37057 3.42656 3.46540 3.74876 3.86655 4.15559 4.27418 4.43754 4.72782 4.94089 5.19905 5.23833 5.33025 5.36367 5.44809 5.51327 5.64880 5.68162 5.74648 5.91784 5.96773 6.04227 6.14048 6.26968 6.27384 6.36614 6.40554 6.43662 6.59775 6.71767 6.74197 6.86200 6.95865 7.06975 7.28319 7.40206 7.49543 7.68444 7.78603 8.18087 8.41601 8.70215 9.17207 9.78068 10.35859 11.22952 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.004044 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.435949 B = 6921.543357 C = 7973.738121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.015 3.985 3 Si 0.892 3.108 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.132 3.868 17 N -0.671 5.671 18 C 0.588 3.412 19 O -0.543 6.543 20 C 0.083 3.917 21 C -0.203 4.203 22 C 0.241 3.759 23 N -0.458 5.458 24 C 0.174 3.826 25 C -0.231 4.231 26 C 0.169 3.831 27 N -0.309 5.309 28 N -0.255 5.255 29 H 0.254 0.746 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.423 0.577 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 0.652 -11.127 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.722 3.278 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.053 3.947 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.322 5.322 18 C 0.370 3.630 19 O -0.420 6.420 20 C -0.078 4.078 21 C -0.234 4.234 22 C 0.015 3.985 23 N -0.169 5.169 24 C -0.012 4.012 25 C -0.255 4.255 26 C 0.035 3.965 27 N -0.082 5.082 28 N -0.084 5.084 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.262 0.738 41 H 0.188 0.812 42 H 0.196 0.804 43 H 0.184 0.816 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.492 0.170 -10.612 10.717 hybrid contribution -0.168 1.433 -0.054 1.443 sum 1.324 1.602 -10.666 10.866 Atomic orbital electron populations 1.69967 1.05065 1.25451 1.53761 1.25019 0.95163 0.97902 1.00401 0.86528 0.79053 0.83943 0.78287 1.21025 1.21670 1.20962 1.19114 0.91283 0.83686 1.43980 0.91438 1.44078 1.32790 1.02691 1.51738 1.20791 0.87879 0.97345 0.89249 1.22199 0.99796 0.96701 0.99650 1.21361 0.97370 0.97400 0.98367 1.22011 0.98056 0.98098 0.98478 1.20830 0.92826 0.88748 0.92343 0.94915 1.21406 0.98696 0.89694 0.89375 1.45971 1.13391 1.40049 1.32770 1.16823 0.84931 0.80890 0.80353 1.90756 1.25034 1.55743 1.70461 1.22317 0.91359 0.97017 0.97105 1.20953 1.01536 1.01876 0.99040 1.20518 0.82807 0.98979 0.96156 1.68214 1.36078 1.06566 1.06064 1.23373 0.89984 0.92147 0.95671 1.21797 0.98348 1.04469 1.00925 1.22143 0.97469 0.86630 0.90301 1.47252 1.09502 1.27150 1.24333 1.78394 1.21224 1.05971 1.02791 0.93630 0.89435 0.96433 0.92842 0.93577 0.93722 0.92897 0.91997 0.93001 0.91090 0.92090 0.73752 0.81160 0.80421 0.81571 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 11.07 55.49 0.61 -24.00 16 2 C 0.01 0.39 5.03 -17.43 -0.09 0.30 16 3 Si 0.89 21.94 29.57 -169.99 -5.03 16.92 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.38 6.94 -15.06 -0.10 -6.49 16 8 H 0.07 1.78 5.87 -52.48 -0.31 1.47 16 9 N -0.59 -13.60 2.97 -164.52 -0.49 -14.09 16 10 C 0.17 3.92 5.25 -3.71 -0.02 3.90 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 12 C -0.11 -1.76 5.88 -26.69 -0.16 -1.92 16 13 C -0.13 -2.12 5.40 -26.38 -0.14 -2.26 16 14 C 0.16 3.11 3.03 -67.38 -0.20 2.90 16 15 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 16 C 0.13 2.53 4.44 -4.04 -0.02 2.51 16 17 N -0.67 -13.75 3.83 -61.24 -0.23 -13.99 16 18 C 0.59 12.21 7.83 -12.31 -0.10 12.12 16 19 O -0.54 -12.02 16.88 5.32 0.09 -11.93 16 20 C 0.08 1.63 7.05 -83.06 -0.59 1.04 16 21 C -0.20 -3.63 10.65 -38.83 -0.41 -4.04 16 22 C 0.24 3.96 7.90 -155.43 -1.23 2.73 16 23 N -0.46 -6.28 10.48 -12.22 -0.13 -6.41 16 24 C 0.17 1.57 11.27 -17.06 -0.19 1.38 16 25 C -0.23 -1.81 10.05 -39.78 -0.40 -2.21 16 26 C 0.17 1.91 11.30 -16.38 -0.19 1.72 16 27 N -0.31 -5.03 3.90 -12.20 -0.05 -5.07 16 28 N -0.26 -4.95 12.34 33.23 0.41 -4.54 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.09 2.25 6.11 -51.93 -0.32 1.93 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.46 7.43 -51.93 -0.39 1.07 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.42 9.28 7.05 -40.82 -0.29 8.99 16 41 H 0.17 2.81 8.06 -52.49 -0.42 2.38 16 42 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -32.19 360.78 -9.30 -41.49 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.93 Total: 7.35 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -4.00 Total: 8.83 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: 0.13 Total: -68.10 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.19 -9.30 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024720703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.888 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds