Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99318 * 2 1 4 4 H 1.48497 * 109.47085 * 239.99833 * 3 2 1 5 5 H 1.48501 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47126 * 119.99768 * 3 2 1 7 7 C 1.38805 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99772 * 190.28519 * 7 2 1 9 9 N 1.36932 * 120.00335 * 10.28455 * 7 2 1 10 10 C 1.46931 * 120.62754 * 32.63381 * 9 7 2 11 11 C 1.53194 * 108.77329 * 126.37607 * 10 9 7 12 12 C 1.53028 * 109.31791 * 54.63046 * 11 10 9 13 13 C 1.53042 * 109.54127 * 298.64168 * 12 11 10 14 14 C 1.46920 * 120.63341 * 212.36011 * 9 7 2 15 15 H 1.09005 * 109.59062 * 113.84425 * 14 9 7 16 16 C 1.52999 * 109.58853 * 353.41328 * 14 9 7 17 17 N 1.46504 * 109.46789 * 60.11678 * 16 14 9 18 18 C 1.34780 * 120.00114 * 180.02562 * 17 16 14 19 19 O 1.21551 * 119.99600 * 0.02562 * 18 17 16 20 20 C 1.47874 * 120.00159 * 180.02562 * 18 17 16 21 21 C 1.39896 * 125.69578 * 180.02562 * 20 18 17 22 22 C 1.38574 * 107.59595 * 179.97438 * 21 20 18 23 23 N 1.34115 * 132.34812 * 180.02562 * 22 21 20 24 24 C 1.31133 * 120.84635 * 180.02562 * 23 22 21 25 25 C 1.40339 * 120.29692 * 359.95776 * 24 23 22 26 26 C 1.35451 * 119.46323 * 0.02562 * 25 24 23 27 27 N 1.36672 * 119.14128 * 0.02562 * 26 25 24 28 28 N 1.32381 * 125.69362 * 359.68601 * 20 18 17 29 29 H 0.96991 * 120.00304 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58906 * 246.15959 * 10 9 7 31 31 H 1.08997 * 109.58641 * 6.44296 * 10 9 7 32 32 H 1.08997 * 109.49804 * 174.59064 * 11 10 9 33 33 H 1.09011 * 109.49381 * 294.68114 * 11 10 9 34 34 H 1.09002 * 109.46079 * 58.65887 * 12 11 10 35 35 H 1.08998 * 109.46437 * 178.62830 * 12 11 10 36 36 H 1.08999 * 109.49753 * 181.31672 * 13 12 11 37 37 H 1.09003 * 109.49212 * 301.41007 * 13 12 11 38 38 H 1.08994 * 109.47264 * 180.11724 * 16 14 9 39 39 H 1.09000 * 109.46727 * 300.12094 * 16 14 9 40 40 H 0.97002 * 120.00387 * 0.02562 * 17 16 14 41 41 H 1.08004 * 126.20199 * 359.96275 * 21 20 18 42 42 H 1.08003 * 119.84735 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.26698 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.43050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6967 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0774 -1.2093 0.1676 9 7 1.3424 -2.3786 -0.2106 10 6 0.1679 -2.4247 -1.0923 11 6 0.3863 -3.5130 -2.1480 12 6 0.7014 -4.8384 -1.4510 13 6 1.9869 -4.6938 -0.6332 14 6 1.7900 -3.6199 0.4353 15 1 1.0364 -3.9527 1.1492 16 6 3.1140 -3.3721 1.1607 17 7 2.9262 -2.3362 2.1795 18 6 3.9642 -1.9505 2.9478 19 8 5.0563 -2.4619 2.7952 20 6 3.7745 -0.9053 3.9765 21 6 4.7644 -0.4162 4.8355 22 6 4.1807 0.5486 5.6411 23 7 4.6685 1.3225 6.6217 24 6 3.8981 2.1786 7.2489 25 6 2.5439 2.2993 6.9009 26 6 2.0385 1.5239 5.9120 27 7 2.8613 0.6385 5.2741 28 7 2.6410 -0.2716 4.2339 29 1 -0.4850 0.8399 -0.0004 30 1 -0.7206 -2.6579 -0.5055 31 1 0.0397 -1.4589 -1.5811 32 1 -0.5164 -3.6235 -2.7488 33 1 1.2203 -3.2332 -2.7918 34 1 -0.1221 -5.1052 -0.7887 35 1 0.8333 -5.6199 -2.1993 36 1 2.2234 -5.6447 -0.1559 37 1 2.8058 -4.4028 -1.2912 38 1 3.4454 -4.2946 1.6374 39 1 3.8657 -3.0437 0.4428 40 1 2.0548 -1.9278 2.3010 41 1 5.7964 -0.7333 4.8656 42 1 4.3078 2.7936 8.0365 43 1 1.9100 3.0048 7.4174 44 1 0.9985 1.6036 5.6318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024720704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = 108.734906 kcal Electronic energy + Delta-G solvation = -28493.244528 eV Core-core repulsion = 24641.566175 eV Total energy + Delta-G solvation = -3851.678354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27706 -39.35159 -38.01915 -37.41148 -34.24740 -34.05836 -33.06816 -31.48398 -30.50854 -29.90155 -29.10102 -26.44776 -25.31983 -24.45593 -23.67119 -22.26068 -22.03886 -20.65610 -19.80330 -19.10236 -18.29102 -17.68327 -16.81843 -16.28902 -16.11453 -15.59694 -15.33161 -15.30954 -14.48460 -14.35281 -14.03226 -13.78114 -13.60527 -13.40551 -13.22400 -13.06885 -12.83966 -12.59300 -12.40603 -12.03685 -11.79036 -11.31246 -11.24769 -11.16294 -10.93229 -10.78569 -10.56640 -10.29766 -10.14609 -10.00101 -9.98730 -9.80957 -9.53715 -9.49411 -9.36372 -8.59899 -8.27604 -7.96312 -6.62812 -5.83920 -3.31956 0.41071 0.73022 1.96312 2.02874 3.29608 3.34124 3.36851 3.42540 3.46808 3.75103 3.86687 4.15705 4.27417 4.43513 4.72813 4.94219 5.19944 5.23699 5.33233 5.36413 5.44879 5.50688 5.64336 5.68889 5.74660 5.91840 5.96539 6.04491 6.14298 6.27405 6.28005 6.36490 6.40815 6.43677 6.59786 6.71550 6.73960 6.86018 6.95964 7.07370 7.28381 7.39612 7.49571 7.67699 7.78633 8.18402 8.42254 8.70501 9.17423 9.77775 10.36201 11.22990 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.004047 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.989790 B = 6916.982595 C = 7966.700487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.016 3.984 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.132 3.868 17 N -0.671 5.671 18 C 0.588 3.412 19 O -0.543 6.543 20 C 0.083 3.917 21 C -0.203 4.203 22 C 0.241 3.759 23 N -0.458 5.458 24 C 0.174 3.826 25 C -0.231 4.231 26 C 0.169 3.831 27 N -0.309 5.309 28 N -0.255 5.255 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.423 0.577 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 0.809 11.116 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.008 3.992 17 N -0.322 5.322 18 C 0.370 3.630 19 O -0.420 6.420 20 C -0.078 4.078 21 C -0.234 4.234 22 C 0.015 3.985 23 N -0.169 5.169 24 C -0.012 4.012 25 C -0.255 4.255 26 C 0.035 3.965 27 N -0.082 5.082 28 N -0.084 5.084 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.262 0.738 41 H 0.188 0.812 42 H 0.196 0.804 43 H 0.184 0.816 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.496 0.322 10.609 10.719 hybrid contribution -0.161 1.433 0.044 1.443 sum 1.335 1.755 10.653 10.879 Atomic orbital electron populations 1.69961 1.05070 1.25467 1.53686 1.25046 0.95164 0.97894 1.00246 0.86533 0.79059 0.83949 0.78296 1.20950 1.21668 1.21002 1.19088 0.91040 0.83541 1.44447 0.91536 1.44039 1.33048 1.03190 1.50980 1.20774 0.88054 0.96910 0.89434 1.22203 0.99831 0.96829 0.99525 1.21356 0.97383 0.97405 0.98334 1.21869 0.98141 0.98083 0.98621 1.20650 0.92852 0.88761 0.92416 0.94997 1.21420 0.98694 0.89346 0.89707 1.45969 1.13335 1.39123 1.33727 1.16825 0.84932 0.80947 0.80302 1.90756 1.25098 1.56119 1.70033 1.22317 0.91392 0.96944 0.97143 1.20949 1.01561 1.01320 0.99570 1.20517 0.82748 0.98837 0.96355 1.68213 1.36128 1.06274 1.06309 1.23373 0.90005 0.92277 0.95522 1.21794 0.98311 1.04271 1.01162 1.22139 0.97512 0.86470 0.90427 1.47255 1.09465 1.26737 1.24788 1.78402 1.21293 1.05573 1.03111 0.93621 0.96411 0.89596 0.93567 0.92845 0.92882 0.93707 0.92925 0.92028 0.92104 0.91094 0.73766 0.81159 0.80419 0.81572 0.80178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 11.12 55.49 0.62 -24.00 16 2 C 0.02 0.43 5.05 -17.43 -0.09 0.34 16 3 Si 0.89 21.95 29.57 -169.99 -5.03 16.92 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.40 6.92 -15.06 -0.10 -6.50 16 8 H 0.07 1.75 5.91 -52.48 -0.31 1.44 16 9 N -0.59 -13.59 2.97 -165.03 -0.49 -14.09 16 10 C 0.17 3.94 5.25 -3.71 -0.02 3.92 16 11 C -0.14 -2.69 6.08 -26.62 -0.16 -2.85 16 12 C -0.11 -1.75 5.89 -26.69 -0.16 -1.91 16 13 C -0.13 -2.13 5.34 -26.83 -0.14 -2.28 16 14 C 0.16 3.12 3.00 -67.83 -0.20 2.92 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C 0.13 2.53 4.42 -4.04 -0.02 2.51 16 17 N -0.67 -13.76 3.86 -61.24 -0.24 -14.00 16 18 C 0.59 12.23 7.83 -12.31 -0.10 12.13 16 19 O -0.54 -12.03 16.88 5.32 0.09 -11.94 16 20 C 0.08 1.63 7.05 -83.07 -0.59 1.05 16 21 C -0.20 -3.63 10.65 -38.84 -0.41 -4.05 16 22 C 0.24 3.96 7.90 -155.42 -1.23 2.74 16 23 N -0.46 -6.29 10.48 -12.23 -0.13 -6.41 16 24 C 0.17 1.58 11.27 -17.06 -0.19 1.38 16 25 C -0.23 -1.82 10.05 -39.79 -0.40 -2.22 16 26 C 0.17 1.91 11.30 -16.39 -0.19 1.73 16 27 N -0.31 -5.03 3.90 -12.20 -0.05 -5.08 16 28 N -0.26 -4.96 12.34 33.23 0.41 -4.55 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 2.20 6.18 -51.93 -0.32 1.88 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.46 7.42 -51.93 -0.39 1.08 16 40 H 0.42 9.29 7.07 -40.82 -0.29 9.00 16 41 H 0.17 2.81 8.06 -52.48 -0.42 2.38 16 42 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -32.21 360.85 -9.31 -41.52 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.94 Total: 7.29 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -4.00 Total: 8.90 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: 0.12 Total: -68.13 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.21 -9.31 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024720704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.251 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds