Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99318 * 2 1 4 4 H 1.48497 * 109.47085 * 239.99833 * 3 2 1 5 5 H 1.48501 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47126 * 119.99768 * 3 2 1 7 7 C 1.38805 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99772 * 190.28519 * 7 2 1 9 9 N 1.36932 * 120.00335 * 10.28455 * 7 2 1 10 10 C 1.46931 * 120.62754 * 32.63381 * 9 7 2 11 11 C 1.53194 * 108.77329 * 126.37607 * 10 9 7 12 12 C 1.53028 * 109.31791 * 54.63046 * 11 10 9 13 13 C 1.53042 * 109.54127 * 298.64168 * 12 11 10 14 14 C 1.46920 * 120.63341 * 212.36011 * 9 7 2 15 15 H 1.09005 * 109.59062 * 113.84425 * 14 9 7 16 16 C 1.52999 * 109.58853 * 353.41328 * 14 9 7 17 17 N 1.46504 * 109.46789 * 60.11678 * 16 14 9 18 18 C 1.34780 * 120.00114 * 180.02562 * 17 16 14 19 19 O 1.21551 * 119.99600 * 0.02562 * 18 17 16 20 20 C 1.47874 * 120.00159 * 180.02562 * 18 17 16 21 21 C 1.39896 * 125.69578 * 180.02562 * 20 18 17 22 22 C 1.38574 * 107.59595 * 179.97438 * 21 20 18 23 23 N 1.34115 * 132.34812 * 180.02562 * 22 21 20 24 24 C 1.31133 * 120.84635 * 180.02562 * 23 22 21 25 25 C 1.40339 * 120.29692 * 359.95776 * 24 23 22 26 26 C 1.35451 * 119.46323 * 0.02562 * 25 24 23 27 27 N 1.36672 * 119.14128 * 0.02562 * 26 25 24 28 28 N 1.32381 * 125.69362 * 359.68601 * 20 18 17 29 29 H 0.96991 * 120.00304 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58906 * 246.15959 * 10 9 7 31 31 H 1.08997 * 109.58641 * 6.44296 * 10 9 7 32 32 H 1.08997 * 109.49804 * 174.59064 * 11 10 9 33 33 H 1.09011 * 109.49381 * 294.68114 * 11 10 9 34 34 H 1.09002 * 109.46079 * 58.65887 * 12 11 10 35 35 H 1.08998 * 109.46437 * 178.62830 * 12 11 10 36 36 H 1.08999 * 109.49753 * 181.31672 * 13 12 11 37 37 H 1.09003 * 109.49212 * 301.41007 * 13 12 11 38 38 H 1.08994 * 109.47264 * 180.11724 * 16 14 9 39 39 H 1.09000 * 109.46727 * 300.12094 * 16 14 9 40 40 H 0.97002 * 120.00387 * 0.02562 * 17 16 14 41 41 H 1.08004 * 126.20199 * 359.96275 * 21 20 18 42 42 H 1.08003 * 119.84735 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.26698 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.43050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6967 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0774 -1.2093 0.1676 9 7 1.3424 -2.3786 -0.2106 10 6 0.1679 -2.4247 -1.0923 11 6 0.3863 -3.5130 -2.1480 12 6 0.7014 -4.8384 -1.4510 13 6 1.9869 -4.6938 -0.6332 14 6 1.7900 -3.6199 0.4353 15 1 1.0364 -3.9527 1.1492 16 6 3.1140 -3.3721 1.1607 17 7 2.9262 -2.3362 2.1795 18 6 3.9642 -1.9505 2.9478 19 8 5.0563 -2.4619 2.7952 20 6 3.7745 -0.9053 3.9765 21 6 4.7644 -0.4162 4.8355 22 6 4.1807 0.5486 5.6411 23 7 4.6685 1.3225 6.6217 24 6 3.8981 2.1786 7.2489 25 6 2.5439 2.2993 6.9009 26 6 2.0385 1.5239 5.9120 27 7 2.8613 0.6385 5.2741 28 7 2.6410 -0.2716 4.2339 29 1 -0.4850 0.8399 -0.0004 30 1 -0.7206 -2.6579 -0.5055 31 1 0.0397 -1.4589 -1.5811 32 1 -0.5164 -3.6235 -2.7488 33 1 1.2203 -3.2332 -2.7918 34 1 -0.1221 -5.1052 -0.7887 35 1 0.8333 -5.6199 -2.1993 36 1 2.2234 -5.6447 -0.1559 37 1 2.8058 -4.4028 -1.2912 38 1 3.4454 -4.2946 1.6374 39 1 3.8657 -3.0437 0.4428 40 1 2.0548 -1.9278 2.3010 41 1 5.7964 -0.7333 4.8656 42 1 4.3078 2.7936 8.0365 43 1 1.9100 3.0048 7.4174 44 1 0.9985 1.6036 5.6318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024720704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = 87.697862 kcal Electronic energy + Delta-G solvation = -28494.156763 eV Core-core repulsion = 24641.566175 eV Total energy + Delta-G solvation = -3852.590588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41373 -40.89494 -39.45668 -38.73229 -35.82926 -35.10467 -34.92728 -32.79933 -31.95096 -31.63592 -30.26771 -27.99254 -26.97571 -25.67825 -24.88060 -23.84018 -23.38269 -22.22971 -21.28685 -20.68092 -19.48539 -18.92194 -18.28671 -17.59777 -17.43109 -17.17443 -16.88051 -16.54400 -16.17330 -15.75162 -15.42510 -15.39563 -14.99326 -14.82485 -14.60674 -14.48208 -14.08609 -13.89258 -13.72192 -13.63530 -13.43506 -12.90828 -12.88307 -12.61865 -12.44608 -12.38840 -12.34876 -12.09201 -11.80261 -11.52604 -11.46821 -11.10401 -11.03559 -10.95211 -10.67462 -10.55182 -9.97387 -9.14289 -8.54585 -7.86457 -5.33932 -0.53542 -0.32360 0.70251 0.88820 1.32711 1.33740 1.40126 2.03738 2.21023 2.38972 2.43571 2.83115 2.92689 3.30244 3.53730 3.56970 3.77144 3.96643 4.00692 4.19949 4.23416 4.27596 4.34296 4.42066 4.49681 4.54869 4.59899 4.64127 4.73410 4.87043 5.00541 5.04983 5.08368 5.14321 5.23369 5.28996 5.31906 5.38243 5.47184 5.51543 5.63361 5.72687 5.85667 6.03591 6.43050 6.51884 6.55497 7.06211 7.18705 7.86517 8.39436 9.17929 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.004047 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.989790 B = 6916.982595 C = 7966.700487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.298 1.298 7 C -0.234 4.234 8 H 0.055 0.945 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.159 3.841 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.674 5.674 18 C 0.588 3.412 19 O -0.565 6.565 20 C 0.059 3.941 21 C -0.235 4.235 22 C 0.245 3.755 23 N -0.489 5.489 24 C 0.190 3.810 25 C -0.186 4.186 26 C 0.126 3.874 27 N -0.311 5.311 28 N -0.296 5.296 29 H 0.248 0.752 30 H 0.000 1.000 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.415 0.585 41 H 0.170 0.830 42 H 0.234 0.766 43 H 0.226 0.774 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 1.445 13.043 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.765 3.235 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.226 1.226 7 C -0.365 4.365 8 H 0.073 0.927 9 N -0.327 5.327 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.323 5.323 18 C 0.371 3.629 19 O -0.444 6.444 20 C -0.100 4.100 21 C -0.267 4.267 22 C 0.017 3.983 23 N -0.202 5.202 24 C 0.007 3.993 25 C -0.209 4.209 26 C -0.005 4.005 27 N -0.085 5.085 28 N -0.126 5.126 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.187 0.813 42 H 0.250 0.750 43 H 0.242 0.758 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.126 0.952 12.533 12.620 hybrid contribution -0.076 1.441 -0.273 1.468 sum 1.050 2.392 12.260 12.535 Atomic orbital electron populations 1.70058 1.05659 1.25224 1.55674 1.25408 0.95603 0.99524 1.01473 0.85881 0.77956 0.82437 0.77259 1.21159 1.21417 1.22553 1.19059 0.90557 0.84558 1.42282 0.92707 1.44231 1.32924 1.03765 1.51738 1.20599 0.87339 0.96781 0.89997 1.22055 1.00481 0.96620 0.98289 1.21344 0.97105 0.96643 0.98894 1.21823 0.98327 0.98249 0.97678 1.20824 0.92579 0.88029 0.93230 0.95039 1.21483 0.98189 0.89924 0.89324 1.46003 1.12867 1.39387 1.33999 1.17047 0.84513 0.80976 0.80391 1.90711 1.25670 1.57114 1.70920 1.22079 0.92444 0.97645 0.97836 1.20983 1.01572 1.03190 1.00952 1.20629 0.82751 0.98467 0.96410 1.68366 1.37221 1.07850 1.06719 1.24519 0.90307 0.89985 0.94507 1.22568 0.98250 1.02038 0.98069 1.23016 0.98653 0.87001 0.91872 1.47445 1.10219 1.26686 1.24126 1.78228 1.21528 1.07469 1.05416 0.94228 0.98163 0.93067 0.91687 0.93571 0.92454 0.90552 0.89641 0.92578 0.89759 0.92776 0.74707 0.81260 0.74968 0.75775 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 11.12 21.65 0.24 -52.00 16 2 C -0.02 -1.27 5.05 84.86 0.43 -0.84 16 3 Si 0.93 46.74 29.57 68.60 2.03 48.77 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 7 C -0.23 -12.31 6.92 84.03 0.58 -11.73 16 8 H 0.06 3.02 5.91 -2.91 -0.02 3.00 16 9 N -0.60 -28.39 2.97 -676.03 -2.01 -30.40 16 10 C 0.18 8.22 5.25 86.36 0.45 8.68 16 11 C -0.14 -4.87 6.08 30.67 0.19 -4.69 16 12 C -0.10 -3.07 5.89 30.62 0.18 -2.89 16 13 C -0.12 -3.80 5.34 30.53 0.16 -3.64 16 14 C 0.16 6.18 3.00 44.83 0.13 6.31 16 15 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 16 C 0.13 5.23 4.42 86.38 0.38 5.61 16 17 N -0.67 -28.98 3.86 -465.94 -1.80 -30.78 16 18 C 0.59 25.93 7.83 86.79 0.68 26.61 16 19 O -0.57 -26.37 16.88 -3.88 -0.07 -26.44 16 20 C 0.06 2.46 7.05 42.02 0.30 2.76 16 21 C -0.24 -8.94 10.65 22.75 0.24 -8.70 16 22 C 0.24 8.12 7.90 133.00 1.05 9.17 16 23 N -0.49 -12.43 10.48 -192.59 -2.02 -14.44 16 24 C 0.19 2.51 11.27 85.31 0.96 3.47 16 25 C -0.19 -1.96 10.05 22.14 0.22 -1.74 16 26 C 0.13 2.58 11.30 83.29 0.94 3.52 16 27 N -0.31 -10.17 3.90 -192.51 -0.75 -10.92 16 28 N -0.30 -12.12 12.34 -48.79 -0.60 -12.72 16 29 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.05 2.71 6.18 -2.39 -0.01 2.70 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.05 2.29 7.42 -2.39 -0.02 2.27 16 40 H 0.42 19.26 7.07 -92.71 -0.66 18.60 16 41 H 0.17 6.08 8.06 -2.91 -0.02 6.05 16 42 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 44 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -76.70 360.85 2.30 -74.39 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.38 Total: 22.64 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 6.90 Total: 31.91 kcal Atomic # 7 Polarization: -144.33 SS G_CDS: -6.94 Total: -151.27 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.07 Total: -26.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.70 2.30 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024720704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.090 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds