Wall clock time and date at job start Tue Mar 31 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00186 * 2 1 4 4 H 1.48501 * 109.47143 * 269.99737 * 3 2 1 5 5 H 1.48493 * 109.47226 * 29.99945 * 3 2 1 6 6 H 1.48503 * 109.46864 * 149.99797 * 3 2 1 7 7 C 1.38819 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99458 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00324 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00251 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.89882 * 328.49480 * 10 9 7 12 12 C 1.53721 * 109.91400 * 207.20531 * 10 9 7 13 13 C 1.54107 * 106.67079 * 241.52316 * 12 10 9 14 14 C 1.54456 * 104.73112 * 336.59570 * 13 12 10 15 15 H 1.08999 * 113.73341 * 272.41012 * 14 13 12 16 16 C 1.54891 * 108.83858 * 143.49362 * 14 13 12 17 17 N 1.47352 * 105.01267 * 288.82436 * 16 14 13 18 18 C 1.34771 * 125.70152 * 155.09034 * 17 16 14 19 19 O 1.21718 * 119.99951 * 185.27036 * 18 17 16 20 20 C 1.46599 * 120.00106 * 5.26683 * 18 17 16 21 21 C 1.41155 * 126.56400 * 24.39788 * 20 18 17 22 22 N 1.30524 * 108.27578 * 179.75222 * 21 20 18 23 23 N 1.39984 * 109.36889 * 0.22354 * 22 21 20 24 24 C 1.38462 * 143.84800 * 179.97438 * 23 22 21 25 25 C 1.33076 * 108.41817 * 180.02562 * 24 23 22 26 26 N 1.38057 * 108.13725 * 0.02562 * 25 24 23 27 27 H 0.97002 * 126.15556 * 179.97438 * 26 25 24 28 28 C 1.35011 * 108.27772 * 0.02562 * 23 22 21 29 29 C 1.47035 * 108.59308 * 334.82417 * 17 16 14 30 30 C 1.53910 * 109.91353 * 89.58421 * 10 9 7 31 31 H 1.08996 * 112.92305 * 265.08438 * 30 10 9 32 32 H 0.97002 * 119.99931 * 0.02562 * 1 2 3 33 33 H 0.96998 * 119.99658 * 0.02562 * 9 7 2 34 34 H 1.08997 * 110.01743 * 0.82494 * 12 10 9 35 35 H 1.09001 * 110.01786 * 122.17646 * 12 10 9 36 36 H 1.09001 * 110.38110 * 95.40220 * 13 12 10 37 37 H 1.08997 * 110.38661 * 217.77718 * 13 12 10 38 38 H 1.09001 * 110.45076 * 169.90674 * 16 14 13 39 39 H 1.08995 * 110.28683 * 47.66254 * 16 14 13 40 40 H 1.08005 * 125.85993 * 0.02562 * 21 20 18 41 41 H 1.07991 * 125.78513 * 0.05192 * 24 23 22 42 42 H 1.07997 * 125.92511 * 179.97438 * 25 24 23 43 43 H 1.09009 * 109.82331 * 122.04929 * 29 17 16 44 44 H 1.08995 * 109.82854 * 243.00529 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 1 3.0006 -3.5411 -0.5365 12 6 1.2069 -4.7527 -0.6635 13 6 0.9630 -5.8316 0.4095 14 6 2.1221 -5.6548 1.4149 15 1 3.0184 -6.2178 1.1545 16 6 1.5893 -5.9218 2.8446 17 7 0.7299 -4.7655 3.1538 18 6 -0.2900 -4.7569 4.0347 19 8 -0.9947 -3.7701 4.1403 20 6 -0.5508 -5.9362 4.8657 21 6 0.3820 -6.9306 5.2307 22 7 -0.2282 -7.8098 5.9779 23 7 -1.5696 -7.4392 6.1294 24 6 -2.7706 -7.8026 6.7147 25 6 -3.6873 -6.8930 6.3932 26 7 -3.0849 -5.9380 5.5988 27 1 -3.5149 -5.1564 5.2177 28 6 -1.7719 -6.2927 5.4457 29 6 1.1751 -3.6210 2.3452 30 6 2.3279 -4.1063 1.4454 31 1 3.3089 -3.8004 1.8089 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0023 34 1 0.2564 -4.3365 -0.9970 35 1 1.7436 -5.1817 -1.5097 36 1 0.0047 -5.6671 0.9022 37 1 0.9957 -6.8254 -0.0369 38 1 2.4148 -5.9801 3.5540 39 1 1.0065 -6.8426 2.8648 40 1 1.4232 -6.9569 4.9448 41 1 -2.9354 -8.6758 7.3284 42 1 -4.7228 -6.9011 6.6998 43 1 0.3512 -3.2610 1.7288 44 1 1.5266 -2.8218 2.9978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026406997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:12 Heat of formation + Delta-G solvation = 130.525047 kcal Electronic energy + Delta-G solvation = -28500.391468 eV Core-core repulsion = 24649.658006 eV Total energy + Delta-G solvation = -3850.733462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.22849 -40.19198 -38.46180 -37.65122 -34.90849 -33.16185 -32.81826 -30.81653 -29.84384 -29.64950 -28.39228 -27.99771 -25.32481 -23.99505 -23.03717 -22.61877 -22.00812 -21.25611 -19.70159 -19.52092 -18.63388 -17.58668 -17.34446 -16.49347 -16.36892 -15.74697 -15.60433 -15.17775 -14.79650 -14.70990 -14.30687 -14.08199 -13.85565 -13.53048 -13.10384 -12.96999 -12.92860 -12.80355 -12.44714 -12.28467 -11.92292 -11.35318 -11.05932 -10.98054 -10.77008 -10.67595 -10.63381 -10.48521 -10.27737 -10.19553 -10.07401 -9.83958 -9.56775 -9.45761 -9.32635 -8.83773 -8.14879 -7.70367 -6.90917 -5.71782 -3.01017 1.40973 1.77362 1.85492 2.32104 2.62933 3.41912 3.47004 3.52237 3.54241 3.67725 4.18595 4.52217 4.62356 4.65234 4.72045 4.89998 4.99287 5.09107 5.16086 5.34919 5.44156 5.51529 5.54642 5.59029 5.66490 5.67480 5.76946 5.87729 5.99006 6.06866 6.17585 6.21213 6.33435 6.39625 6.41840 6.65938 6.66516 6.71509 6.80673 6.89086 6.91994 6.99851 7.08527 7.56722 7.75213 8.03615 8.46039 8.68742 9.57114 10.14158 10.47654 11.50310 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.003311 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.384686 B = 8455.790866 C = 9402.870354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.180 3.820 11 H 0.054 0.946 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.106 4.106 15 H 0.099 0.901 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.609 3.391 19 O -0.557 6.557 20 C -0.323 4.323 21 C 0.121 3.879 22 N -0.306 5.306 23 N -0.308 5.308 24 C -0.001 4.001 25 C 0.029 3.971 26 N -0.575 5.575 27 H 0.445 0.555 28 C 0.316 3.684 29 C 0.132 3.868 30 C -0.118 4.118 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.201 0.799 41 H 0.191 0.809 42 H 0.204 0.796 43 H 0.089 0.911 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -19.737 10.713 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.069 3.931 11 H 0.073 0.927 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.125 4.125 15 H 0.118 0.882 16 C -0.019 4.019 17 N -0.344 5.344 18 C 0.400 3.600 19 O -0.437 6.437 20 C -0.343 4.343 21 C -0.061 4.061 22 N -0.128 5.128 23 N -0.078 5.078 24 C -0.127 4.127 25 C -0.100 4.100 26 N -0.187 5.187 27 H 0.287 0.713 28 C 0.080 3.920 29 C 0.010 3.990 30 C -0.141 4.141 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.220 0.780 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.217 0.783 41 H 0.208 0.792 42 H 0.221 0.779 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.213 -20.182 11.508 23.611 hybrid contribution -0.137 2.031 -0.467 2.088 sum -4.350 -18.151 11.040 21.686 Atomic orbital electron populations 1.69657 1.05079 1.25649 1.57255 1.24737 0.95442 0.97645 1.02844 0.86235 0.78709 0.84125 0.77374 1.21844 1.21863 1.20776 1.19227 0.90941 0.84119 1.43072 0.91184 1.42650 1.05664 0.99773 1.87810 1.20719 0.94815 0.86353 0.91227 0.92750 1.22412 1.00896 0.96015 0.97454 1.22219 0.98137 0.98296 0.96417 1.23223 0.98397 0.97486 0.93432 0.88248 1.22382 0.93608 0.89607 0.96352 1.48288 1.31768 1.13400 1.40955 1.16496 0.79371 0.85721 0.78456 1.90806 1.48263 1.35102 1.69520 1.18497 0.90410 1.05510 1.19880 1.24184 0.99780 0.89398 0.92735 1.77455 0.83458 1.24438 1.27411 1.47011 1.08134 1.17617 1.35044 1.21551 0.79883 1.04263 1.07004 1.22276 0.99986 0.89468 0.98223 1.41590 1.06244 1.25354 1.45541 0.71346 1.19194 0.86804 0.89487 0.96481 1.21890 0.97999 0.86581 0.92502 1.23581 0.97792 0.92919 0.99771 0.89957 0.93513 0.78009 0.91434 0.92243 0.91651 0.92423 0.91969 0.90909 0.78263 0.79178 0.77890 0.89319 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.60 9.94 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.48 3.64 -52.60 -0.19 -17.67 16 10 C 0.18 3.41 3.27 -67.08 -0.22 3.19 16 11 H 0.05 1.04 8.07 -51.92 -0.42 0.62 16 12 C -0.13 -2.09 6.55 -25.78 -0.17 -2.26 16 13 C -0.11 -1.56 5.86 -25.39 -0.15 -1.71 16 14 C -0.11 -1.36 4.27 -87.12 -0.37 -1.74 16 15 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 16 C 0.10 1.29 4.46 -2.58 -0.01 1.28 16 17 N -0.61 -10.25 2.83 -172.29 -0.49 -10.73 16 18 C 0.61 11.16 7.77 -12.89 -0.10 11.06 16 19 O -0.56 -12.44 17.33 5.17 0.09 -12.35 16 20 C -0.32 -4.91 5.80 -104.83 -0.61 -5.52 16 21 C 0.12 1.56 10.14 -17.00 -0.17 1.39 16 22 N -0.31 -4.15 12.61 30.85 0.39 -3.76 16 23 N -0.31 -3.86 4.67 -11.88 -0.06 -3.92 16 24 C 0.00 -0.01 11.91 -16.35 -0.19 -0.20 16 25 C 0.03 0.17 11.92 -16.54 -0.20 -0.02 16 26 N -0.58 -5.71 6.24 -11.98 -0.07 -5.78 16 27 H 0.44 3.95 8.96 -40.82 -0.37 3.58 16 28 C 0.32 4.32 8.46 -154.53 -1.31 3.01 16 29 C 0.13 2.59 5.41 -3.18 -0.02 2.57 16 30 C -0.12 -1.98 3.98 -87.84 -0.35 -2.33 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.38 10.22 6.70 -40.82 -0.27 9.94 16 34 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.03 7.30 -51.93 -0.38 0.65 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 7.33 -51.93 -0.38 0.27 16 39 H 0.07 0.82 6.81 -51.93 -0.35 0.47 16 40 H 0.20 1.96 5.94 -52.48 -0.31 1.64 16 41 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.20 0.23 8.06 -52.49 -0.42 -0.19 16 43 H 0.09 2.07 6.03 -51.92 -0.31 1.75 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -36.76 354.23 -9.10 -45.86 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.70 Total: 11.44 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -4.11 Total: 1.58 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: 0.30 Total: -69.45 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.76 -9.10 -45.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026406997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.384 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds