Wall clock time and date at job start Tue Mar 31 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47110 * 269.99924 * 3 2 1 5 5 H 1.48501 * 109.47101 * 30.00275 * 3 2 1 6 6 H 1.48502 * 109.47061 * 150.00371 * 3 2 1 7 7 C 1.38818 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99668 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00166 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47118 * 155.00047 * 10 9 7 12 12 C 1.52995 * 109.47229 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47681 * 300.00292 * 12 11 10 14 14 N 1.46495 * 109.47385 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99862 * 155.00096 * 14 13 12 16 16 O 1.21586 * 120.00219 * 359.97438 * 15 14 13 17 17 C 1.47601 * 119.99570 * 179.97438 * 15 14 13 18 18 C 1.41823 * 119.98375 * 359.97438 * 17 15 14 19 19 C 1.35637 * 119.59885 * 180.23634 * 18 17 15 20 20 C 1.41055 * 119.40017 * 359.50371 * 19 18 17 21 21 N 1.32190 * 133.25196 * 180.20341 * 20 19 18 22 22 N 1.28649 * 109.56393 * 180.26931 * 21 20 19 23 23 C 1.30732 * 110.34007 * 359.97438 * 22 21 20 24 24 N 1.36248 * 107.45318 * 0.02562 * 23 22 21 25 25 C 1.35841 * 133.52683 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47027 * 59.99585 * 13 12 11 27 27 C 1.53000 * 109.47188 * 275.00106 * 10 9 7 28 28 H 0.96998 * 119.99645 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00121 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47504 * 35.00115 * 10 9 7 31 31 H 1.09005 * 109.46830 * 60.00161 * 11 10 9 32 32 H 1.09003 * 109.47214 * 300.00220 * 11 10 9 33 33 H 1.09005 * 109.47035 * 179.97438 * 12 11 10 34 34 H 1.09005 * 109.46897 * 60.00430 * 12 11 10 35 35 H 1.09000 * 109.46655 * 300.00229 * 13 12 11 36 36 H 0.97001 * 120.00084 * 334.99958 * 14 13 12 37 37 H 1.08002 * 120.19680 * 359.95241 * 18 17 15 38 38 H 1.07992 * 120.29860 * 179.72815 * 19 18 17 39 39 H 1.08002 * 126.27063 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.80959 * 359.95424 * 25 24 23 41 41 H 1.09005 * 109.46830 * 60.00303 * 26 13 12 42 42 H 1.08999 * 109.46761 * 180.02562 * 26 13 12 43 43 H 1.08999 * 109.47376 * 299.99772 * 27 10 9 44 44 H 1.08992 * 109.47402 * 60.00346 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.4991 -2.2590 -0.6113 12 6 6.2643 -3.5839 -0.6107 13 6 6.4110 -4.0876 0.8265 14 7 7.1443 -5.3559 0.8270 15 6 7.8273 -5.7389 1.9240 16 8 7.8353 -5.0316 2.9129 17 6 8.5656 -7.0170 1.9246 18 6 8.5555 -7.8419 0.7711 19 6 9.2327 -9.0171 0.7819 20 6 9.9456 -9.3949 1.9389 21 7 10.6838 -10.4480 2.2445 22 7 11.1241 -10.3310 3.4476 23 6 10.7028 -9.2134 3.9790 24 7 9.9409 -8.5784 3.0448 25 6 9.2585 -7.4039 3.0352 26 6 5.0240 -4.2995 1.4367 27 6 4.2588 -2.9751 1.4360 28 1 -0.4849 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.5646 -3.2066 -0.5901 31 1 6.0467 -1.5233 -0.0221 32 1 5.3946 -1.8998 -1.6351 33 1 7.2523 -3.4330 -1.0459 34 1 5.7169 -4.3199 -1.1996 35 1 6.9584 -3.3516 1.4153 36 1 7.1382 -5.9200 0.0379 37 1 8.0082 -7.5383 -0.1091 38 1 9.2290 -9.6561 -0.0887 39 1 10.9184 -8.8588 4.9761 40 1 9.2638 -6.7727 3.9116 41 1 4.4766 -5.0355 0.8478 42 1 5.1286 -4.6579 2.4607 43 1 4.8064 -2.2395 2.0251 44 1 3.2708 -3.1261 1.8707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026576502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:50 Heat of formation + Delta-G solvation = 58.377288 kcal Electronic energy + Delta-G solvation = -26881.864991 eV Core-core repulsion = 23028.002968 eV Total energy + Delta-G solvation = -3853.862024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.68924 -41.37550 -39.65683 -38.63659 -36.51985 -35.34674 -34.56898 -33.07446 -32.32837 -31.66157 -30.54556 -29.31000 -26.22620 -24.97386 -24.82219 -23.67306 -23.61801 -22.57762 -21.78914 -21.11476 -19.83449 -19.39307 -18.48511 -18.18029 -17.69133 -17.18344 -16.83033 -16.41153 -16.17830 -16.00569 -15.87294 -15.39697 -15.00414 -14.95094 -14.63506 -14.49314 -14.31790 -13.69273 -13.59587 -13.36829 -13.19686 -13.06989 -12.89606 -12.75220 -12.41356 -12.38893 -12.27794 -12.01960 -11.97399 -11.77857 -11.75690 -11.44664 -11.20479 -11.16518 -10.86955 -10.81596 -10.07800 -9.30101 -9.26891 -7.99889 -5.32259 -0.68777 -0.20026 1.05169 1.33801 1.39146 1.42389 1.49645 1.78804 2.04175 2.39821 2.50576 2.94625 3.31128 3.33195 3.42912 3.56490 3.65546 3.72267 3.79170 3.81800 3.89477 4.17398 4.28636 4.36200 4.39888 4.54992 4.57191 4.63008 4.65583 4.77028 4.83352 4.86866 4.92035 4.98829 5.14456 5.18964 5.19821 5.28288 5.30894 5.45049 5.54324 5.64317 5.66368 5.81471 6.25086 6.46705 7.11534 7.12011 7.32897 7.89714 8.07266 9.21751 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.001975 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.683840 B =14173.754385 C =14311.873219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.253 1.253 7 C -0.224 4.224 8 H 0.056 0.944 9 N -0.754 5.754 10 C 0.173 3.827 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.153 3.847 14 N -0.697 5.697 15 C 0.572 3.428 16 O -0.571 6.571 17 C -0.156 4.156 18 C -0.049 4.049 19 C -0.087 4.087 20 C 0.191 3.809 21 N -0.334 5.334 22 N -0.294 5.294 23 C 0.141 3.859 24 N -0.402 5.402 25 C 0.144 3.856 26 C -0.115 4.115 27 C -0.126 4.126 28 H 0.256 0.744 29 H 0.364 0.636 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.419 0.581 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.271 0.729 40 H 0.199 0.801 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.904 -16.500 0.778 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.261 4.261 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.177 1.177 7 C -0.355 4.355 8 H 0.074 0.926 9 N -0.397 5.397 10 C 0.065 3.935 11 C -0.156 4.156 12 C -0.146 4.146 13 C 0.049 3.951 14 N -0.349 5.349 15 C 0.358 3.642 16 O -0.451 6.451 17 C -0.163 4.163 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.060 4.060 21 N -0.178 5.178 22 N -0.129 5.129 23 C -0.142 4.142 24 N -0.082 5.082 25 C 0.018 3.982 26 C -0.154 4.154 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.197 0.803 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.207 0.793 38 H 0.204 0.796 39 H 0.287 0.713 40 H 0.216 0.784 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 24.561 -17.592 1.413 30.244 hybrid contribution -0.946 2.101 0.385 2.336 sum 23.615 -15.491 1.798 28.299 Atomic orbital electron populations 1.69891 1.07153 1.26496 1.60185 1.25521 0.96113 1.01291 1.03135 0.85405 0.78546 0.79685 0.78099 1.20246 1.22789 1.17733 1.19035 0.82819 0.93234 1.40405 0.92588 1.42859 1.02369 1.04237 1.90187 1.20518 0.92202 0.86856 0.93898 1.21702 0.94233 0.98206 1.01503 1.21679 1.01940 0.96775 0.94243 1.20929 0.91197 0.84896 0.98087 1.45749 1.49864 1.23080 1.16178 1.17821 0.78565 0.84572 0.83205 1.90842 1.64136 1.55618 1.34531 1.19467 1.03567 0.97576 0.95661 1.21552 0.96366 0.91565 0.97815 1.20535 0.96549 0.98414 0.95331 1.23126 1.01534 0.89923 0.91402 1.74853 1.15042 1.19965 1.07933 1.74115 1.19695 1.16461 1.02672 1.27519 0.96429 0.91297 0.99001 1.44010 1.34147 1.16377 1.13704 1.22007 0.90098 0.84778 1.01288 1.21775 0.95650 0.97193 1.00775 1.22008 0.98735 0.96723 0.99198 0.93541 0.80287 0.93440 0.91911 0.90756 0.88603 0.89305 0.90668 0.74242 0.79311 0.79581 0.71326 0.78401 0.90728 0.93029 0.93294 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.91 13.97 21.65 0.30 -62.61 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.95 44.93 27.73 68.60 1.90 46.83 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 7 C -0.22 -12.43 10.41 84.04 0.87 -11.55 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -33.41 4.92 -322.95 -1.59 -35.00 16 10 C 0.17 5.79 2.77 44.99 0.12 5.92 16 11 C -0.12 -2.77 5.39 30.59 0.16 -2.60 16 12 C -0.11 -1.59 5.39 30.59 0.16 -1.42 16 13 C 0.15 2.69 2.45 44.99 0.11 2.80 16 14 N -0.70 -7.97 5.03 -445.64 -2.24 -10.21 16 15 C 0.57 8.74 7.73 86.71 0.67 9.41 16 16 O -0.57 -13.62 15.93 -3.99 -0.06 -13.69 16 17 C -0.16 -1.64 5.84 -20.33 -0.12 -1.76 16 18 C -0.05 -0.27 9.53 22.55 0.21 -0.05 16 19 C -0.09 -0.78 10.09 22.36 0.23 -0.56 16 20 C 0.19 3.21 7.92 134.12 1.06 4.27 16 21 N -0.33 -7.77 12.29 -55.22 -0.68 -8.45 16 22 N -0.29 -6.41 12.18 -59.41 -0.72 -7.14 16 23 C 0.14 1.90 12.97 179.81 2.33 4.23 16 24 N -0.40 -5.57 2.94 -355.20 -1.04 -6.62 16 25 C 0.14 1.61 10.53 83.67 0.88 2.49 16 26 C -0.11 -2.67 5.49 30.58 0.17 -2.50 16 27 C -0.13 -4.03 5.50 30.58 0.17 -3.87 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.36 15.53 5.66 -92.71 -0.52 15.01 16 30 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.08 1.64 7.58 -2.39 -0.02 1.62 16 36 H 0.42 1.56 6.63 -92.71 -0.61 0.94 16 37 H 0.19 -0.47 6.44 -2.91 -0.02 -0.49 16 38 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.27 0.82 8.06 -2.91 -0.02 0.79 16 40 H 0.20 1.70 7.56 -2.91 -0.02 1.67 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -83.58 362.82 3.22 -80.36 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.15 Total: 15.30 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 7.51 Total: 1.22 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.98 Total: -130.03 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.06 Total: -13.69 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -83.58 3.22 -80.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026576502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.737 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds