Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35338 * 125.69049 * 2 1 4 4 N 1.36169 * 107.14411 * 180.02562 * 3 2 1 5 5 C 1.36214 * 133.93037 * 179.97438 * 4 3 2 6 6 C 1.35486 * 120.52300 * 180.02562 * 5 4 3 7 7 N 1.32683 * 122.11148 * 359.74430 * 6 5 4 8 8 C 1.32296 * 121.19296 * 0.52349 * 7 6 5 9 9 C 1.47797 * 120.59428 * 179.76284 * 8 7 6 10 10 O 1.21556 * 120.00377 * 179.71851 * 9 8 7 11 11 N 1.34783 * 119.99804 * 359.72714 * 9 8 7 12 12 C 1.46506 * 119.99918 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47174 * 175.48160 * 12 11 9 14 14 H 1.09000 * 109.87392 * 55.55377 * 13 12 11 15 15 C 1.54327 * 109.88212 * 294.54097 * 13 12 11 16 16 C 1.55157 * 102.93851 * 218.38954 * 15 13 12 17 17 C 1.54910 * 101.58384 * 35.50001 * 16 15 13 18 18 N 1.47022 * 109.88606 * 176.73101 * 13 12 11 19 19 C 1.36938 * 125.64280 * 298.33856 * 18 13 12 20 20 H 1.07994 * 120.00733 * 345.85041 * 19 18 13 21 21 C 1.38820 * 119.99555 * 165.85225 * 19 18 13 22 22 N 1.31613 * 119.99773 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99936 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46988 * 90.00071 * 23 21 19 25 25 H 1.48496 * 109.47025 * 210.00563 * 23 21 19 26 26 H 1.48499 * 109.46965 * 330.00025 * 23 21 19 27 27 C 1.37569 * 106.98929 * 0.02562 * 4 3 2 28 28 N 1.31847 * 108.10946 * 359.97438 * 27 4 3 29 29 H 1.09001 * 109.47285 * 269.98060 * 1 2 3 30 30 H 1.08997 * 109.47239 * 29.97816 * 1 2 3 31 31 H 1.09007 * 109.47043 * 149.98252 * 1 2 3 32 32 H 1.08000 * 126.43458 * 0.07614 * 3 2 1 33 33 H 1.07996 * 119.73983 * 0.05136 * 5 4 3 34 34 H 1.08005 * 118.93844 * 179.97438 * 6 5 4 35 35 H 0.96996 * 119.99866 * 359.71627 * 11 9 8 36 36 H 1.09004 * 109.46294 * 295.47811 * 12 11 9 37 37 H 1.08995 * 109.47279 * 55.47694 * 12 11 9 38 38 H 1.08998 * 110.72148 * 336.75267 * 15 13 12 39 39 H 1.09000 * 110.72059 * 100.02559 * 15 13 12 40 40 H 1.09005 * 111.00207 * 153.57914 * 16 15 13 41 41 H 1.09003 * 111.00583 * 277.42340 * 16 15 13 42 42 H 1.08999 * 110.36395 * 81.82730 * 17 16 15 43 43 H 1.08994 * 110.36511 * 204.03842 * 17 16 15 44 44 H 0.97000 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5875 0.6661 -0.0006 5 6 4.7955 1.2955 -0.0013 6 6 5.9451 0.5785 -0.0023 7 7 5.9487 -0.7483 0.0024 8 6 4.8190 -1.4367 -0.0020 9 6 4.8385 -2.9145 -0.0019 10 8 3.7940 -3.5362 -0.0008 11 7 6.0146 -3.5729 -0.0029 12 6 6.0340 -5.0378 -0.0034 13 6 7.4785 -5.5287 -0.1181 14 1 8.0809 -5.0978 0.6816 15 6 8.0620 -5.1271 -1.4892 16 6 8.9171 -6.3620 -1.8780 17 6 8.0674 -7.5224 -1.3026 18 7 7.5155 -6.9964 -0.0409 19 6 7.1056 -7.7499 1.0265 20 1 6.9319 -7.2811 1.9837 21 6 6.9133 -9.1167 0.8780 22 7 7.1255 -9.6883 -0.2884 23 14 6.3548 -10.1449 2.3342 24 1 4.8709 -10.1911 2.3674 25 1 6.8902 -11.5235 2.2011 26 1 6.8594 -9.5373 3.5917 27 6 3.5501 -0.7091 -0.0015 28 7 2.2863 -1.0847 -0.0009 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 1.9651 2.1271 0.0012 33 1 4.8373 2.3747 -0.0007 34 1 6.8887 1.1039 -0.0033 35 1 6.8481 -3.0768 -0.0078 36 1 5.5973 -5.4071 0.9246 37 1 5.4560 -5.4085 -0.8498 38 1 7.2651 -4.9658 -2.2152 39 1 8.6868 -4.2387 -1.3972 40 1 9.0118 -6.4464 -2.9607 41 1 9.8977 -6.3232 -1.4036 42 1 7.2622 -7.7803 -1.9906 43 1 8.6947 -8.3928 -1.1106 44 1 6.9908 -10.6432 -0.3922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028245314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = 98.622665 kcal Electronic energy + Delta-G solvation = -27430.962776 eV Core-core repulsion = 23578.845922 eV Total energy + Delta-G solvation = -3852.116853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30776 -39.62639 -38.56817 -37.52973 -34.72764 -34.19403 -32.43476 -32.09782 -30.35254 -29.53634 -28.64513 -28.17322 -25.51159 -24.59914 -23.69271 -23.39163 -21.25872 -20.70663 -20.12461 -19.59061 -18.67777 -18.24385 -16.78677 -16.60026 -16.39984 -15.90563 -15.54991 -15.07314 -14.84616 -14.55779 -14.43239 -13.95893 -13.82231 -13.72291 -13.42343 -13.13475 -13.08557 -12.62139 -12.53563 -12.04385 -11.84171 -11.73901 -11.53823 -11.26050 -10.90068 -10.75905 -10.63401 -10.35099 -10.19130 -10.06829 -9.94173 -9.79998 -9.71901 -9.62571 -9.08434 -8.67020 -8.55646 -8.46768 -6.80209 -5.72688 -3.09045 -0.22293 0.86794 1.97140 2.43491 2.67790 3.03448 3.44293 3.50012 3.50531 3.56574 3.62541 3.78199 3.95453 4.25684 4.53013 4.69894 4.73335 4.83101 4.93357 5.36003 5.37686 5.39628 5.40551 5.46210 5.56632 5.67657 5.69088 5.74400 5.86617 6.11085 6.17989 6.23263 6.31051 6.41043 6.50778 6.58674 6.65653 6.73991 6.84880 7.07913 7.13052 7.55281 7.56395 7.65282 7.81279 7.83615 8.29305 8.42733 9.21580 9.82099 10.49309 11.39224 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.002798 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.828730 B =10004.587489 C =11122.146000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.085 4.085 4 N -0.356 5.356 5 C 0.028 3.972 6 C 0.031 3.969 7 N -0.429 5.429 8 C 0.189 3.811 9 C 0.562 3.438 10 O -0.497 6.497 11 N -0.698 5.698 12 C 0.108 3.892 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.127 4.127 16 C -0.149 4.149 17 C 0.172 3.828 18 N -0.588 5.588 19 C -0.233 4.233 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.194 3.806 28 N -0.429 5.429 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.190 0.810 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 26.723 -1.799 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.218 4.218 4 N -0.030 5.030 5 C -0.097 4.097 6 C -0.110 4.110 7 N -0.144 5.144 8 C 0.023 3.977 9 C 0.342 3.658 10 O -0.369 6.369 11 N -0.350 5.350 12 C -0.017 4.017 13 C 0.044 3.956 14 H 0.057 0.943 15 C -0.165 4.165 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.199 4.199 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.053 4.053 28 N -0.150 5.150 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.207 0.793 33 H 0.192 0.808 34 H 0.202 0.798 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.063 24.937 -1.742 25.326 hybrid contribution -0.411 1.289 0.723 1.534 sum -4.475 26.226 -1.019 26.624 Atomic orbital electron populations 1.20189 0.86235 1.03557 1.03133 1.21334 0.97447 0.87614 1.01119 1.22494 0.80293 1.01405 1.17590 1.42842 1.06304 1.09029 1.44782 1.22734 0.83168 1.00741 1.03067 1.22107 0.97659 0.89313 1.01891 1.68120 1.27378 1.08785 1.10155 1.22463 0.83778 0.95304 0.96144 1.17271 0.85148 0.83884 0.79450 1.90919 1.31664 1.66615 1.47677 1.45965 1.07585 1.08824 1.72665 1.22378 1.00862 0.75530 1.02905 1.21129 0.91809 0.87411 0.95273 0.94296 1.22615 0.99083 0.97688 0.97078 1.23009 0.98876 0.97409 0.99426 1.21461 0.94345 0.93258 0.86215 1.44487 1.72985 0.98320 1.15438 1.18998 1.39076 0.89606 0.88484 0.90584 1.24908 1.00870 0.97162 0.96927 1.69937 1.53794 1.10309 1.22126 0.86148 0.78646 0.79562 0.81588 1.21362 1.21701 1.20589 1.22521 0.94728 0.80188 1.07900 1.70611 0.97767 1.28491 1.18083 0.90402 0.90652 0.90112 0.79349 0.80799 0.79807 0.75965 0.91040 0.91213 0.91814 0.92249 0.92378 0.92302 0.95634 0.90866 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.00 0.38 -0.21 16 2 C 0.06 0.69 7.07 -82.87 -0.59 0.10 16 3 C -0.08 -0.77 11.70 -16.66 -0.19 -0.97 16 4 N -0.36 -3.83 2.95 -61.12 -0.18 -4.01 16 5 C 0.03 0.20 11.00 -16.59 -0.18 0.02 16 6 C 0.03 0.24 11.01 -18.17 -0.20 0.04 16 7 N -0.43 -5.06 9.67 -8.68 -0.08 -5.14 16 8 C 0.19 2.83 6.97 -80.54 -0.56 2.27 16 9 C 0.56 10.05 7.81 -12.35 -0.10 9.95 16 10 O -0.50 -10.85 16.23 5.32 0.09 -10.77 16 11 N -0.70 -11.54 5.34 -61.26 -0.33 -11.87 16 12 C 0.11 2.15 5.08 -4.04 -0.02 2.13 16 13 C 0.15 3.06 3.21 -66.95 -0.21 2.84 16 14 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.13 -2.16 6.13 -24.89 -0.15 -2.31 16 16 C -0.15 -2.75 7.08 -24.58 -0.17 -2.93 16 17 C 0.17 4.13 5.42 -2.53 -0.01 4.12 16 18 N -0.59 -14.73 3.13 -162.58 -0.51 -15.23 16 19 C -0.23 -6.44 9.75 -15.06 -0.15 -6.59 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 22 N -0.92 -26.87 10.56 55.49 0.59 -26.28 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.19 2.92 7.66 -153.98 -1.18 1.74 16 28 N -0.43 -7.00 10.74 -7.53 -0.08 -7.08 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.19 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.19 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.41 5.68 7.72 -40.82 -0.32 5.37 16 36 H 0.07 1.59 7.90 -51.93 -0.41 1.18 16 37 H 0.07 1.53 8.06 -51.93 -0.42 1.11 16 38 H 0.06 1.09 7.80 -51.93 -0.40 0.68 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 43 H 0.07 1.95 6.89 -51.93 -0.36 1.59 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -35.92 369.00 -9.51 -45.43 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.10 Total: 1.98 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -3.44 Total: 10.07 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -0.59 Total: -69.61 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.92 -9.51 -45.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028245314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.052 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds