Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46854 * 164.47452 * 3 2 1 5 5 C 1.35425 * 117.00174 * 180.02562 * 4 3 2 6 6 N 1.32236 * 119.79696 * 0.02562 * 5 4 3 7 7 C 1.31883 * 121.79831 * 179.97438 * 6 5 4 8 8 C 1.38359 * 121.18651 * 0.02562 * 7 6 5 9 9 C 1.38340 * 119.45784 * 359.73985 * 8 7 6 10 10 C 1.39989 * 118.34868 * 0.50119 * 9 8 7 11 11 C 1.47519 * 120.59935 * 179.78219 * 10 9 8 12 12 O 1.21583 * 120.00259 * 179.72127 * 11 10 9 13 13 N 1.34772 * 119.99680 * 359.71392 * 11 10 9 14 14 C 1.46511 * 120.00102 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47381 * 174.11809 * 14 13 11 16 16 H 1.09003 * 109.87189 * 56.83790 * 15 14 13 17 17 C 1.54317 * 109.88267 * 177.85795 * 15 14 13 18 18 C 1.55160 * 102.94372 * 141.60800 * 17 15 14 19 19 C 1.54911 * 101.58206 * 324.50033 * 18 17 15 20 20 N 1.47028 * 109.88027 * 295.66854 * 15 14 13 21 21 C 1.36932 * 125.65061 * 61.62318 * 20 15 14 22 22 H 1.08002 * 119.99742 * 324.05861 * 21 20 15 23 23 C 1.38809 * 120.00355 * 144.06420 * 21 20 15 24 24 N 1.31621 * 120.00347 * 162.22805 * 23 21 20 25 25 Si 1.86803 * 119.99561 * 342.22978 * 23 21 20 26 26 H 1.48495 * 109.47215 * 94.10071 * 25 23 21 27 27 H 1.48501 * 109.46936 * 214.09900 * 25 23 21 28 28 H 1.48495 * 109.47097 * 334.09837 * 25 23 21 29 29 H 4.38452 * 5.44429 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47137 * 44.47266 * 3 2 1 31 31 H 1.08993 * 109.47012 * 284.47120 * 3 2 1 32 32 H 1.08004 * 119.40676 * 180.02562 * 7 6 5 33 33 H 1.07992 * 120.27156 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.82310 * 180.25604 * 9 8 7 35 35 H 0.97003 * 120.00699 * 0.28260 * 13 11 10 36 36 H 1.09003 * 109.46175 * 294.11717 * 14 13 11 37 37 H 1.09002 * 109.46585 * 54.11189 * 14 13 11 38 38 H 1.09004 * 110.72264 * 259.97097 * 17 15 14 39 39 H 1.09002 * 110.71920 * 23.24526 * 17 15 14 40 40 H 1.09000 * 111.00500 * 82.57209 * 18 17 15 41 41 H 1.08992 * 111.00454 * 206.42428 * 18 17 15 42 42 H 1.08996 * 110.36789 * 155.84391 * 19 18 17 43 43 H 1.09004 * 110.36448 * 278.05873 * 19 18 17 44 44 H 0.96998 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2990 -0.3606 5 6 4.4642 1.4706 -0.4087 6 7 5.2666 0.4575 -0.1282 7 6 6.5792 0.5803 -0.1632 8 6 7.1777 1.7824 -0.4967 9 6 6.3859 2.8744 -0.8042 10 6 4.9952 2.7219 -0.7553 11 6 4.1041 3.8549 -1.0690 12 8 2.8978 3.7090 -1.0281 13 7 4.6273 5.0518 -1.4009 14 6 3.7423 6.1772 -1.7120 15 6 4.5779 7.4435 -1.9099 16 1 5.3173 7.2807 -2.6941 17 6 3.6598 8.6239 -2.2910 18 6 4.2911 9.8165 -1.5251 19 6 4.7744 9.1295 -0.2235 20 7 5.2494 7.8012 -0.6518 21 6 6.1642 7.0284 0.0123 22 1 6.0562 5.9539 0.0241 23 6 7.2303 7.6260 0.6704 24 7 7.9003 6.9546 1.5829 25 14 7.7139 9.3833 0.2610 26 1 7.0446 10.3137 1.2052 27 1 9.1866 9.5319 0.3802 28 1 7.2950 9.7012 -1.1277 29 1 -1.0502 -0.0004 0.0003 30 1 3.0097 -0.7325 -0.7199 31 1 3.0094 -0.2560 0.9950 32 1 7.1981 -0.2728 0.0726 33 1 8.2540 1.8665 -0.5204 34 1 6.8298 3.8220 -1.0714 35 1 5.5897 5.1672 -1.4375 36 1 3.1876 5.9615 -2.6252 37 1 3.0434 6.3279 -0.8893 38 1 3.6842 8.7999 -3.3665 39 1 2.6397 8.4442 -1.9516 40 1 5.1301 10.2368 -2.0797 41 1 3.5451 10.5812 -1.3095 42 1 5.5895 9.6973 0.2251 43 1 3.9492 9.0299 0.4817 44 1 8.6451 7.3723 2.0430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028270699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = 60.601879 kcal Electronic energy + Delta-G solvation = -28048.971932 eV Core-core repulsion = 24162.913623 eV Total energy + Delta-G solvation = -3886.058309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76911 -38.95755 -38.00187 -37.70370 -34.04357 -33.45014 -32.74989 -32.50312 -30.64068 -30.01790 -29.27076 -27.45317 -25.32179 -24.43207 -23.48351 -22.73909 -21.00419 -20.01738 -19.68942 -18.62897 -18.48605 -17.61039 -16.73174 -16.41259 -16.27259 -16.15145 -15.18263 -14.98055 -14.75579 -14.46011 -14.33606 -14.00669 -13.72718 -13.38885 -12.99787 -12.90878 -12.83832 -12.50728 -12.28996 -12.16569 -11.94817 -11.75818 -11.37674 -11.30630 -10.94063 -10.78696 -10.71996 -10.49815 -10.22138 -10.21023 -9.93203 -9.86465 -9.82081 -9.59614 -9.24336 -8.65160 -8.52222 -8.26548 -6.89503 -6.08516 -3.53168 0.83126 1.33905 2.21086 2.71179 3.26031 3.26556 3.39849 3.44933 3.48845 3.69237 4.05393 4.23829 4.35565 4.44491 4.87896 4.90514 4.97538 5.10017 5.12264 5.23270 5.30032 5.31413 5.39428 5.42125 5.49087 5.57330 5.75919 5.83992 5.93497 5.96510 6.09266 6.11175 6.18915 6.24911 6.32828 6.38779 6.40963 6.55906 6.82784 6.84766 7.06904 7.26022 7.46288 7.76097 7.80892 8.13304 8.23005 8.71231 8.79948 9.56188 10.16279 11.05425 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003723 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.292055 B = 7519.486515 C = 8976.780471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.193 4.193 3 C 0.178 3.822 4 O -0.264 6.264 5 C 0.367 3.633 6 N -0.551 5.551 7 C 0.158 3.842 8 C -0.213 4.213 9 C 0.002 3.998 10 C -0.197 4.197 11 C 0.558 3.442 12 O -0.533 6.533 13 N -0.705 5.705 14 C 0.118 3.882 15 C 0.143 3.857 16 H 0.048 0.952 17 C -0.121 4.121 18 C -0.136 4.136 19 C 0.117 3.883 20 N -0.601 5.601 21 C -0.258 4.258 22 H 0.089 0.911 23 C 0.036 3.964 24 N -0.900 5.900 25 Si 0.890 3.110 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.268 1.268 29 H 0.223 0.777 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.409 0.591 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -9.334 -6.782 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.103 3.897 4 O -0.169 6.169 5 C 0.188 3.812 6 N -0.276 5.276 7 C 0.002 3.998 8 C -0.233 4.233 9 C -0.024 4.024 10 C -0.203 4.203 11 C 0.344 3.656 12 O -0.412 6.412 13 N -0.359 5.359 14 C -0.007 4.007 15 C 0.036 3.964 16 H 0.066 0.934 17 C -0.159 4.159 18 C -0.174 4.174 19 C -0.007 4.007 20 N -0.327 5.327 21 C -0.385 4.385 22 H 0.107 0.893 23 C -0.165 4.165 24 N -0.542 5.542 25 Si 0.721 3.279 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.193 1.193 29 H 0.240 0.760 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.156 -10.089 -6.420 13.450 hybrid contribution 1.213 1.696 -0.039 2.085 sum -4.943 -8.393 -6.459 11.687 Atomic orbital electron populations 1.24932 0.95786 0.97143 1.00564 1.22376 0.93670 1.02398 1.00834 1.19120 0.84270 0.84238 1.02068 1.86579 1.16250 1.32004 1.82057 1.19699 0.83846 0.88753 0.88951 1.67413 1.06771 1.31561 1.21824 1.22577 0.89004 0.97172 0.91077 1.21955 1.01941 0.93781 1.05660 1.21845 0.91099 0.99536 0.89897 1.20120 0.94418 0.93766 1.12046 1.17740 0.87603 0.82483 0.77817 1.90783 1.14254 1.83610 1.52530 1.46060 1.11465 1.09455 1.68892 1.21922 0.93151 0.86019 0.99632 1.21287 0.93251 0.91789 0.90096 0.93415 1.22486 0.98891 0.94993 0.99577 1.22777 0.99886 0.96970 0.97791 1.21890 0.96811 0.87680 0.94316 1.44673 1.48104 1.18350 1.21606 1.18640 1.00509 0.91294 1.28085 0.89344 1.25424 0.95884 0.97912 0.97311 1.69808 1.22431 1.37950 1.23962 0.86706 0.76069 0.85784 0.79347 1.21566 1.23216 1.19331 0.76007 0.89260 0.89184 0.81981 0.83759 0.83049 0.75197 0.92832 0.91599 0.91385 0.91214 0.91607 0.91545 0.94110 0.95087 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.19 -2.69 13.73 -37.12 -0.51 -3.20 16 3 C 0.18 2.46 5.78 34.37 0.20 2.66 16 4 O -0.26 -4.72 8.17 -39.74 -0.32 -5.05 16 5 C 0.37 6.27 7.51 -16.61 -0.12 6.14 16 6 N -0.55 -7.95 9.21 -12.98 -0.12 -8.07 16 7 C 0.16 1.86 11.17 -17.49 -0.20 1.67 16 8 C -0.21 -2.62 10.09 -39.50 -0.40 -3.02 16 9 C 0.00 0.03 9.64 -38.89 -0.37 -0.34 16 10 C -0.20 -3.48 5.90 -104.69 -0.62 -4.10 16 11 C 0.56 11.17 7.77 -12.48 -0.10 11.07 16 12 O -0.53 -12.17 15.18 -16.48 -0.25 -12.42 16 13 N -0.70 -13.34 4.31 -61.35 -0.26 -13.61 16 14 C 0.12 2.17 5.15 -4.04 -0.02 2.15 16 15 C 0.14 2.61 3.30 -66.96 -0.22 2.39 16 16 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.12 -1.82 6.48 -24.90 -0.16 -1.99 16 18 C -0.14 -2.22 7.09 -24.58 -0.17 -2.40 16 19 C 0.12 2.43 6.24 -2.53 -0.02 2.42 16 20 N -0.60 -13.39 2.67 -162.57 -0.43 -13.82 16 21 C -0.26 -6.58 9.50 -15.06 -0.14 -6.72 16 22 H 0.09 2.31 5.53 -52.49 -0.29 2.02 16 23 C 0.04 0.97 5.45 -17.43 -0.10 0.87 16 24 N -0.90 -25.77 13.97 55.49 0.78 -24.99 16 25 Si 0.89 21.46 24.83 -169.99 -4.22 17.24 16 26 H -0.29 -6.95 6.81 56.52 0.39 -6.56 16 27 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 28 H -0.27 -6.26 7.06 56.52 0.40 -5.86 16 29 H 0.22 1.66 7.80 -54.08 -0.42 1.24 16 30 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.15 2.24 6.52 -52.49 -0.34 1.89 16 35 H 0.41 7.59 4.43 -40.82 -0.18 7.41 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.92 3.22 -51.93 -0.17 0.75 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.53 366.32 -7.31 -40.84 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.61 Total: 8.17 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.38 Total: 6.19 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.04 Total: -60.50 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.57 Total: -17.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.22 Total: 17.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.53 -7.31 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028270699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.441 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds