Wall clock time and date at job start Tue Mar 31 2020 05:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46854 * 164.47452 * 3 2 1 5 5 C 1.35425 * 117.00174 * 180.02562 * 4 3 2 6 6 N 1.32236 * 119.79696 * 0.02562 * 5 4 3 7 7 C 1.31883 * 121.79831 * 179.97438 * 6 5 4 8 8 C 1.38359 * 121.18651 * 0.02562 * 7 6 5 9 9 C 1.38340 * 119.45784 * 359.73985 * 8 7 6 10 10 C 1.39989 * 118.34868 * 0.50119 * 9 8 7 11 11 C 1.47519 * 120.59935 * 179.78219 * 10 9 8 12 12 O 1.21583 * 120.00259 * 179.72127 * 11 10 9 13 13 N 1.34772 * 119.99680 * 359.71392 * 11 10 9 14 14 C 1.46511 * 120.00102 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47381 * 174.11809 * 14 13 11 16 16 H 1.09003 * 109.87189 * 56.83790 * 15 14 13 17 17 C 1.54317 * 109.88267 * 177.85795 * 15 14 13 18 18 C 1.55160 * 102.94372 * 141.60800 * 17 15 14 19 19 C 1.54911 * 101.58206 * 324.50033 * 18 17 15 20 20 N 1.47028 * 109.88027 * 295.66854 * 15 14 13 21 21 C 1.36932 * 125.65061 * 61.62318 * 20 15 14 22 22 H 1.08002 * 119.99742 * 324.05861 * 21 20 15 23 23 C 1.38809 * 120.00355 * 144.06420 * 21 20 15 24 24 N 1.31621 * 120.00347 * 162.22805 * 23 21 20 25 25 Si 1.86803 * 119.99561 * 342.22978 * 23 21 20 26 26 H 1.48495 * 109.47215 * 94.10071 * 25 23 21 27 27 H 1.48501 * 109.46936 * 214.09900 * 25 23 21 28 28 H 1.48495 * 109.47097 * 334.09837 * 25 23 21 29 29 H 4.38452 * 5.44429 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47137 * 44.47266 * 3 2 1 31 31 H 1.08993 * 109.47012 * 284.47120 * 3 2 1 32 32 H 1.08004 * 119.40676 * 180.02562 * 7 6 5 33 33 H 1.07992 * 120.27156 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.82310 * 180.25604 * 9 8 7 35 35 H 0.97003 * 120.00699 * 0.28260 * 13 11 10 36 36 H 1.09003 * 109.46175 * 294.11717 * 14 13 11 37 37 H 1.09002 * 109.46585 * 54.11189 * 14 13 11 38 38 H 1.09004 * 110.72264 * 259.97097 * 17 15 14 39 39 H 1.09002 * 110.71920 * 23.24526 * 17 15 14 40 40 H 1.09000 * 111.00500 * 82.57209 * 18 17 15 41 41 H 1.08992 * 111.00454 * 206.42428 * 18 17 15 42 42 H 1.08996 * 110.36789 * 155.84391 * 19 18 17 43 43 H 1.09004 * 110.36448 * 278.05873 * 19 18 17 44 44 H 0.96998 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2990 -0.3606 5 6 4.4642 1.4706 -0.4087 6 7 5.2666 0.4575 -0.1282 7 6 6.5792 0.5803 -0.1632 8 6 7.1777 1.7824 -0.4967 9 6 6.3859 2.8744 -0.8042 10 6 4.9952 2.7219 -0.7553 11 6 4.1041 3.8549 -1.0690 12 8 2.8978 3.7090 -1.0281 13 7 4.6273 5.0518 -1.4009 14 6 3.7423 6.1772 -1.7120 15 6 4.5779 7.4435 -1.9099 16 1 5.3173 7.2807 -2.6941 17 6 3.6598 8.6239 -2.2910 18 6 4.2911 9.8165 -1.5251 19 6 4.7744 9.1295 -0.2235 20 7 5.2494 7.8012 -0.6518 21 6 6.1642 7.0284 0.0123 22 1 6.0562 5.9539 0.0241 23 6 7.2303 7.6260 0.6704 24 7 7.9003 6.9546 1.5829 25 14 7.7139 9.3833 0.2610 26 1 7.0446 10.3137 1.2052 27 1 9.1866 9.5319 0.3802 28 1 7.2950 9.7012 -1.1277 29 1 -1.0502 -0.0004 0.0003 30 1 3.0097 -0.7325 -0.7199 31 1 3.0094 -0.2560 0.9950 32 1 7.1981 -0.2728 0.0726 33 1 8.2540 1.8665 -0.5204 34 1 6.8298 3.8220 -1.0714 35 1 5.5897 5.1672 -1.4375 36 1 3.1876 5.9615 -2.6252 37 1 3.0434 6.3279 -0.8893 38 1 3.6842 8.7999 -3.3665 39 1 2.6397 8.4442 -1.9516 40 1 5.1301 10.2368 -2.0797 41 1 3.5451 10.5812 -1.3095 42 1 5.5895 9.6973 0.2251 43 1 3.9492 9.0299 0.4817 44 1 8.6451 7.3723 2.0430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028270699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:08 Heat of formation + Delta-G solvation = 37.870107 kcal Electronic energy + Delta-G solvation = -28049.957656 eV Core-core repulsion = 24162.913623 eV Total energy + Delta-G solvation = -3887.044033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98136 -40.43810 -39.31144 -39.09366 -35.57205 -34.62710 -34.46191 -33.73971 -31.79127 -31.75432 -30.70904 -28.51443 -26.78767 -26.01576 -24.90769 -23.94492 -22.47033 -21.53393 -21.15126 -19.80940 -19.59810 -19.11079 -18.02756 -17.94189 -17.80118 -17.40016 -16.61129 -16.42642 -16.06770 -15.88786 -15.48151 -15.37435 -15.16942 -14.85924 -14.65800 -14.19966 -14.13667 -13.92250 -13.82114 -13.56379 -13.28700 -13.04066 -12.93630 -12.86296 -12.62476 -12.25940 -12.04541 -11.79157 -11.72569 -11.51617 -11.37685 -11.20893 -11.16795 -11.02918 -10.64935 -10.61449 -9.97820 -9.54939 -8.73592 -8.14048 -5.54809 -0.34755 0.19868 1.16765 1.33181 1.42496 1.53522 1.72643 1.88699 2.24687 2.45279 2.47544 2.80271 3.06963 3.22763 3.36866 3.38113 3.74775 3.80814 3.92426 3.96393 4.02696 4.13141 4.18496 4.28710 4.29838 4.34213 4.47951 4.49534 4.68094 4.74382 4.84854 4.86917 4.92669 4.99800 5.00846 5.11959 5.15259 5.31715 5.37616 5.48385 5.56114 5.91100 6.13055 6.22801 6.50130 6.56033 6.70002 6.84083 7.26506 7.57818 8.24709 9.02888 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003723 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.292055 B = 7519.486515 C = 8976.780471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.251 4.251 3 C 0.176 3.824 4 O -0.295 6.295 5 C 0.354 3.646 6 N -0.551 5.551 7 C 0.170 3.830 8 C -0.205 4.205 9 C -0.006 4.006 10 C -0.232 4.232 11 C 0.553 3.447 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.122 3.878 15 C 0.140 3.860 16 H 0.055 0.945 17 C -0.111 4.111 18 C -0.125 4.125 19 C 0.104 3.896 20 N -0.618 5.618 21 C -0.241 4.241 22 H 0.074 0.926 23 C -0.018 4.018 24 N -0.945 5.945 25 Si 0.944 3.056 26 H -0.292 1.292 27 H -0.313 1.313 28 H -0.253 1.253 29 H 0.262 0.738 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.212 0.788 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -9.339 -8.314 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.251 4.251 3 C 0.102 3.898 4 O -0.200 6.200 5 C 0.174 3.826 6 N -0.276 5.276 7 C 0.014 3.986 8 C -0.224 4.224 9 C -0.032 4.032 10 C -0.238 4.238 11 C 0.340 3.660 12 O -0.453 6.453 13 N -0.357 5.357 14 C -0.003 4.003 15 C 0.034 3.966 16 H 0.073 0.927 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.020 4.020 20 N -0.344 5.344 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.214 4.214 24 N -0.589 5.589 25 Si 0.775 3.225 26 H -0.220 1.220 27 H -0.243 1.243 28 H -0.177 1.177 29 H 0.278 0.722 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.229 0.771 33 H 0.195 0.805 34 H 0.165 0.835 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.433 -10.070 -7.991 14.375 hybrid contribution 1.228 1.570 0.462 2.046 sum -5.205 -8.500 -7.529 12.492 Atomic orbital electron populations 1.25935 0.96695 0.94712 0.98298 1.22851 0.94568 1.04645 1.03028 1.19275 0.84705 0.83088 1.02692 1.86520 1.17021 1.34181 1.82325 1.19818 0.84041 0.89159 0.89534 1.67540 1.07788 1.30496 1.21782 1.23452 0.88370 0.98440 0.88339 1.22359 1.03338 0.92851 1.03876 1.21928 0.90389 1.00507 0.90332 1.20069 0.95185 0.93519 1.14986 1.18179 0.87556 0.83224 0.77027 1.90736 1.15803 1.84325 1.54421 1.46102 1.11515 1.09510 1.68552 1.21912 0.92845 0.86127 0.99451 1.21497 0.93704 0.92968 0.88405 0.92741 1.22523 0.98367 0.92446 1.01568 1.22745 1.00760 0.97696 0.95078 1.22061 0.96020 0.87141 0.96799 1.44854 1.47633 1.18723 1.23189 1.18742 1.00337 0.91301 1.26672 0.90838 1.25955 0.96565 1.01093 0.97834 1.69922 1.23589 1.39566 1.25840 0.85824 0.74859 0.82118 0.79689 1.21991 1.24268 1.17687 0.72191 0.87961 0.88616 0.77116 0.80465 0.83546 0.75128 0.90845 0.94115 0.87936 0.90133 0.91418 0.88400 0.95916 0.95680 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 19.25 74.32 1.43 -1.73 16 2 C -0.25 -7.11 13.73 31.13 0.43 -6.68 16 3 C 0.18 5.04 5.78 70.18 0.41 5.44 16 4 O -0.29 -11.04 8.17 -66.39 -0.54 -11.58 16 5 C 0.35 12.39 7.51 85.13 0.64 13.03 16 6 N -0.55 -15.44 9.21 -307.99 -2.84 -18.28 16 7 C 0.17 3.59 11.17 84.71 0.95 4.53 16 8 C -0.20 -4.65 10.09 22.32 0.23 -4.42 16 9 C -0.01 -0.17 9.64 22.72 0.22 0.05 16 10 C -0.23 -8.49 5.90 -19.91 -0.12 -8.61 16 11 C 0.55 23.19 7.77 86.69 0.67 23.87 16 12 O -0.57 -27.39 15.18 16.84 0.26 -27.13 16 13 N -0.70 -27.48 4.31 -466.28 -2.01 -29.49 16 14 C 0.12 4.47 5.15 86.38 0.44 4.91 16 15 C 0.14 4.91 3.30 45.34 0.15 5.06 16 16 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 17 C -0.11 -2.95 6.48 31.78 0.21 -2.74 16 18 C -0.12 -3.64 7.09 31.99 0.23 -3.42 16 19 C 0.10 4.18 6.24 86.86 0.54 4.72 16 20 N -0.62 -27.21 2.67 -668.26 -1.79 -28.99 16 21 C -0.24 -12.53 9.50 84.03 0.80 -11.73 16 22 H 0.07 3.98 5.53 -2.91 -0.02 3.96 16 23 C -0.02 -0.97 5.45 84.86 0.46 -0.51 16 24 N -0.94 -55.63 13.97 21.65 0.30 -55.33 16 25 Si 0.94 44.75 24.83 68.60 1.70 46.45 16 26 H -0.29 -13.83 6.81 99.48 0.68 -13.15 16 27 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.25 -11.15 7.06 99.48 0.70 -10.45 16 29 H 0.26 3.20 7.80 -4.41 -0.03 3.17 16 30 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16 31 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 32 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.15 4.49 6.52 -2.91 -0.02 4.47 16 35 H 0.41 15.74 4.43 -92.71 -0.41 15.33 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.02 1.01 3.22 -2.39 -0.01 1.00 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -76.80 366.32 3.36 -73.44 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.59 Total: 29.14 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 7.68 Total: 21.77 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -6.33 Total: -132.09 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.29 Total: -38.71 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.70 Total: 46.45 kcal Total: -76.80 3.36 -73.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028270699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.310 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds