Wall clock time and date at job start Tue Mar 31 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30283 * 124.97228 * 2 1 4 4 C 1.34649 * 109.66894 * 179.97438 * 3 2 1 5 5 C 1.40820 * 107.26533 * 359.97438 * 4 3 2 6 6 N 1.32112 * 120.46825 * 179.97438 * 5 4 3 7 7 C 1.31725 * 121.94657 * 359.97438 * 6 5 4 8 8 C 1.38339 * 121.54869 * 0.02562 * 7 6 5 9 9 C 1.39635 * 119.37432 * 359.97438 * 8 7 6 10 10 C 1.47764 * 121.07357 * 179.97438 * 9 8 7 11 11 O 1.21565 * 119.99793 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00295 * 0.04756 * 10 9 8 13 13 C 1.46496 * 120.00468 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47608 * 179.97438 * 13 12 10 15 15 H 1.09003 * 110.64056 * 305.70480 * 14 13 12 16 16 C 1.55156 * 110.72115 * 182.56417 * 14 13 12 17 17 C 1.54911 * 101.57749 * 206.13528 * 16 14 13 18 18 N 1.47427 * 104.83447 * 37.00856 * 17 16 14 19 19 C 1.36932 * 125.64690 * 155.90050 * 18 17 16 20 20 H 1.07998 * 120.00382 * 342.05912 * 19 18 17 21 21 C 1.38817 * 119.99820 * 162.04900 * 19 18 17 22 22 N 1.31614 * 119.99742 * 156.24447 * 21 19 18 23 23 Si 1.86802 * 119.99958 * 336.25227 * 21 19 18 24 24 H 1.48500 * 109.47144 * 84.66623 * 23 21 19 25 25 H 1.48502 * 109.46827 * 204.66404 * 23 21 19 26 26 H 1.48497 * 109.47189 * 324.66309 * 23 21 19 27 27 C 1.47316 * 108.73197 * 335.71499 * 18 17 16 28 28 N 1.35987 * 124.97620 * 179.97438 * 2 1 3 29 29 H 0.97008 * 126.35251 * 0.04871 * 28 2 1 30 30 H 1.08996 * 109.47213 * 270.02527 * 1 2 3 31 31 H 1.09001 * 109.47062 * 30.03192 * 1 2 3 32 32 H 1.09006 * 109.46817 * 150.02810 * 1 2 3 33 33 H 1.08005 * 119.23043 * 179.72015 * 7 6 5 34 34 H 1.07997 * 120.31397 * 179.97438 * 8 7 6 35 35 H 0.97003 * 119.99757 * 0.02562 * 12 10 9 36 36 H 1.08998 * 109.47748 * 300.00543 * 13 12 10 37 37 H 1.09006 * 109.46739 * 60.00292 * 13 12 10 38 38 H 1.08991 * 111.00273 * 324.20483 * 16 14 13 39 39 H 1.08999 * 111.00429 * 88.02611 * 16 14 13 40 40 H 1.09004 * 110.36785 * 155.84999 * 17 16 14 41 41 H 1.09002 * 110.36951 * 278.05694 * 17 16 14 42 42 H 0.97006 * 120.00022 * 180.02562 * 22 21 19 43 43 H 1.09002 * 110.06005 * 241.86965 * 27 18 17 44 44 H 1.09001 * 109.84936 * 120.61340 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5524 0.7122 0.0006 5 6 3.6007 -0.6952 0.0015 6 7 4.7616 -1.3257 0.0018 7 6 5.9076 -0.6761 0.0006 8 6 5.9559 0.7064 -0.0004 9 6 4.7637 1.4335 -0.0007 10 6 4.7715 2.9111 -0.0012 11 8 3.7219 3.5244 -0.0010 12 7 5.9422 3.5788 -0.0024 13 6 5.9499 5.0437 -0.0034 14 6 7.3951 5.5462 -0.0040 15 1 7.9536 5.1107 0.8246 16 6 7.4375 7.0959 0.0598 17 6 8.7979 7.3978 -0.6169 18 7 8.9132 6.3986 -1.6948 19 6 9.6712 6.5305 -2.8275 20 1 10.0140 7.5067 -3.1373 21 6 9.9993 5.4095 -3.5776 22 7 10.2975 5.5355 -4.8533 23 14 10.0172 3.7221 -2.7764 24 1 8.6439 3.1570 -2.7818 25 1 10.9250 2.8240 -3.5344 26 1 10.4969 3.8440 -1.3764 27 6 8.0817 5.2325 -1.3499 28 7 2.2865 -1.1143 0.0005 29 1 1.9759 -2.0333 0.0002 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 6.8312 -1.2359 0.0054 34 1 6.9067 1.2187 -0.0010 35 1 6.7797 3.0894 -0.0032 36 1 5.4375 5.4093 -0.8933 37 1 5.4385 5.4104 0.8867 38 1 6.6145 7.5328 -0.5055 39 1 7.4282 7.4448 1.0924 40 1 8.7997 8.4056 -1.0321 41 1 9.6117 7.2818 0.0988 42 1 10.5263 4.7521 -5.3776 43 1 8.7060 4.3446 -1.2496 44 1 7.3288 5.0735 -2.1219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028707118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:51 Heat of formation + Delta-G solvation = 85.540256 kcal Electronic energy + Delta-G solvation = -27526.135980 eV Core-core repulsion = 23673.451831 eV Total energy + Delta-G solvation = -3852.684149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.74837 -39.83248 -38.54031 -37.88535 -34.72777 -33.96855 -32.64652 -31.86870 -31.73855 -30.29702 -28.72572 -28.39464 -25.97626 -24.41176 -23.59348 -22.98612 -21.45054 -20.98488 -20.29545 -20.17197 -18.61672 -17.84750 -17.36575 -16.91303 -16.31134 -16.19544 -15.77256 -15.38529 -14.94857 -14.85610 -14.38475 -13.90680 -13.86433 -13.73262 -13.55485 -13.28112 -13.19796 -12.80605 -12.65464 -12.48384 -12.42886 -11.95969 -11.57957 -11.35699 -11.30171 -11.16355 -10.95785 -10.70638 -10.58178 -10.23625 -10.12257 -9.87218 -9.40245 -9.35260 -9.25190 -8.97038 -8.69537 -8.63295 -7.07161 -5.95383 -3.23553 0.11147 0.83629 2.12592 2.40305 2.85307 3.05505 3.29985 3.41674 3.47619 3.62109 3.67055 4.05985 4.31001 4.43716 4.52920 4.53409 4.74075 4.80948 4.87728 4.99694 5.03269 5.07227 5.19881 5.26480 5.34303 5.44193 5.46809 5.57808 5.63592 5.70228 5.82590 5.89340 6.04558 6.08693 6.21182 6.28082 6.36877 6.47709 6.60039 6.73323 6.74201 6.79011 7.44120 7.49391 7.51638 7.70764 8.21970 8.30969 8.83126 9.68638 10.17720 11.21289 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003117 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.675417 B = 8979.729865 C = 9982.377416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.295 3.705 3 N -0.458 5.458 4 C 0.058 3.942 5 C 0.232 3.768 6 N -0.467 5.467 7 C 0.133 3.867 8 C -0.147 4.147 9 C -0.034 4.034 10 C 0.553 3.447 11 O -0.505 6.505 12 N -0.722 5.722 13 C 0.134 3.866 14 C -0.117 4.117 15 H 0.081 0.919 16 C -0.121 4.121 17 C 0.132 3.868 18 N -0.610 5.610 19 C -0.242 4.242 20 H 0.093 0.907 21 C 0.019 3.981 22 N -0.907 5.907 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.280 1.280 27 C 0.124 3.876 28 N -0.586 5.586 29 H 0.428 0.572 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.175 0.825 34 H 0.150 0.850 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.023 0.977 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 -14.202 14.107 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 N -0.178 5.178 4 C -0.066 4.066 5 C -0.005 4.005 6 N -0.181 5.181 7 C -0.033 4.033 8 C -0.170 4.170 9 C -0.047 4.047 10 C 0.338 3.662 11 O -0.379 6.379 12 N -0.374 5.374 13 C 0.010 3.990 14 C -0.136 4.136 15 H 0.099 0.901 16 C -0.160 4.160 17 C 0.007 3.993 18 N -0.337 5.337 19 C -0.369 4.369 20 H 0.111 0.889 21 C -0.179 4.179 22 N -0.550 5.550 23 Si 0.718 3.282 24 H -0.212 1.212 25 H -0.232 1.232 26 H -0.206 1.206 27 C -0.001 4.001 28 N -0.202 5.202 29 H 0.268 0.732 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.192 0.808 34 H 0.167 0.833 35 H 0.235 0.765 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.070 -13.780 13.859 25.949 hybrid contribution 0.913 -1.851 0.277 2.082 sum -16.157 -15.631 14.136 26.555 Atomic orbital electron populations 1.20448 0.83251 1.05198 1.04655 1.23992 0.96120 0.80184 0.96842 1.70349 1.00381 1.26695 1.20365 1.19204 0.92294 0.90913 1.04155 1.18895 0.86236 0.90864 1.04477 1.66202 0.96054 1.41500 1.14314 1.22523 0.94280 0.91262 0.95248 1.22263 0.98008 0.95764 1.00996 1.19690 0.90818 0.93874 1.00345 1.17899 0.84238 0.86227 0.77877 1.90843 1.30982 1.68674 1.47409 1.45959 1.08144 1.08152 1.75172 1.21452 0.96737 0.78133 1.02632 1.22468 0.94346 0.97583 0.99191 0.90105 1.22727 0.99491 0.93374 1.00391 1.21615 0.93528 0.94019 0.90137 1.44857 1.52139 1.16025 1.20686 1.18677 1.26463 0.94903 0.96872 0.88948 1.24972 0.99879 0.97497 0.95552 1.69861 1.50149 1.29926 1.05106 0.86889 0.76844 0.85732 0.78772 1.21250 1.23235 1.20638 1.21770 0.93461 0.91383 0.93487 1.42753 1.03545 1.10561 1.63293 0.73214 0.88886 0.87884 0.89834 0.80797 0.83265 0.76549 0.90711 0.91089 0.90833 0.91188 0.93149 0.95765 0.92733 0.95938 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.30 2.96 8.08 -154.73 -1.25 1.71 16 3 N -0.46 -6.80 10.63 -8.08 -0.09 -6.89 16 4 C 0.06 0.87 6.85 -84.62 -0.58 0.29 16 5 C 0.23 2.94 8.46 -155.65 -1.32 1.63 16 6 N -0.47 -5.61 10.35 -12.30 -0.13 -5.74 16 7 C 0.13 1.35 11.14 -17.56 -0.20 1.15 16 8 C -0.15 -1.64 9.60 -39.02 -0.37 -2.02 16 9 C -0.03 -0.50 5.93 -104.45 -0.62 -1.12 16 10 C 0.55 8.99 7.79 -12.37 -0.10 8.90 16 11 O -0.50 -9.87 16.19 5.31 0.09 -9.78 16 12 N -0.72 -10.44 5.39 -61.28 -0.33 -10.77 16 13 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 14 C -0.12 -1.83 2.98 -88.79 -0.26 -2.09 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.12 -1.83 6.54 -24.58 -0.16 -1.99 16 17 C 0.13 2.53 7.23 -2.53 -0.02 2.51 16 18 N -0.61 -14.62 3.22 -169.83 -0.55 -15.16 16 19 C -0.24 -6.88 10.56 -15.06 -0.16 -7.04 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.02 0.57 5.43 -17.43 -0.09 0.48 16 22 N -0.91 -28.11 13.97 55.49 0.78 -27.34 16 23 Si 0.89 22.23 24.39 -169.99 -4.15 18.08 16 24 H -0.29 -6.80 6.84 56.52 0.39 -6.41 16 25 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 26 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 27 C 0.12 2.60 4.55 -2.91 -0.01 2.59 16 28 N -0.59 -5.36 6.23 -9.44 -0.06 -5.41 16 29 H 0.43 2.28 8.96 -40.82 -0.37 1.92 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.15 1.30 6.53 -52.49 -0.34 0.96 16 35 H 0.40 5.04 6.54 -40.82 -0.27 4.78 16 36 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.02 0.51 3.55 -51.93 -0.18 0.32 16 44 H 0.04 0.98 7.73 -51.93 -0.40 0.58 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -38.69 360.75 -9.57 -48.26 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.79 Total: 2.36 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -4.79 Total: 6.96 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.37 Total: -71.31 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.15 Total: 18.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.69 -9.57 -48.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028707118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.796 kcal (2) G-P(sol) polarization free energy of solvation -38.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds