Wall clock time and date at job start Tue Mar 31 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39965 * 120.32479 * 2 1 4 4 N 1.31502 * 120.10879 * 180.02562 * 3 2 1 5 5 C 1.33378 * 120.85289 * 359.97438 * 4 3 2 6 6 C 1.40800 * 132.47982 * 179.97438 * 5 4 3 7 7 C 1.46591 * 126.53805 * 359.97438 * 6 5 4 8 8 O 1.21707 * 119.99804 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99883 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99975 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47229 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.88906 * 54.29360 * 11 10 9 13 13 C 1.55161 * 111.00596 * 178.17845 * 11 10 9 14 14 C 1.54329 * 102.94257 * 153.57252 * 13 11 10 15 15 N 1.47027 * 107.27113 * 337.80828 * 14 13 11 16 16 C 1.36933 * 125.64695 * 178.96915 * 15 14 13 17 17 H 1.08000 * 119.99939 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00423 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99530 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47248 * 90.00258 * 20 18 16 22 22 H 1.48509 * 109.47081 * 209.99851 * 20 18 16 23 23 H 1.48498 * 109.47214 * 329.99744 * 20 18 16 24 24 C 1.47466 * 108.72431 * 358.97513 * 15 14 13 25 25 C 1.40645 * 106.92656 * 180.02562 * 6 5 4 26 26 N 1.30703 * 108.72408 * 359.97438 * 25 6 5 27 27 N 1.36597 * 120.79825 * 359.72783 * 5 4 3 28 28 C 1.35760 * 120.32292 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46762 * 270.02184 * 1 2 3 30 30 H 1.08996 * 109.47296 * 30.01964 * 1 2 3 31 31 H 1.09005 * 109.47077 * 150.01957 * 1 2 3 32 32 H 1.08005 * 119.94215 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99652 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46802 * 300.00368 * 10 9 7 35 35 H 1.09002 * 109.46856 * 59.99946 * 10 9 7 36 36 H 1.08994 * 110.72091 * 271.93740 * 13 11 10 37 37 H 1.08998 * 110.71934 * 35.03715 * 13 11 10 38 38 H 1.09000 * 109.88186 * 97.22342 * 14 13 11 39 39 H 1.08996 * 109.88123 * 218.23594 * 14 13 11 40 40 H 0.96997 * 120.00196 * 180.02562 * 19 18 16 41 41 H 1.08996 * 110.35244 * 265.25519 * 24 15 14 42 42 H 1.09001 * 110.40750 * 142.91254 * 24 15 14 43 43 H 1.07997 * 125.64409 * 179.97438 * 25 6 5 44 44 H 1.08002 * 120.41897 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2081 0.0000 4 7 3.5287 1.2032 -0.0005 5 6 4.2084 0.0556 -0.0005 6 6 5.5864 -0.2334 -0.0015 7 6 6.6823 0.7402 -0.0033 8 8 6.4371 1.9324 -0.0036 9 7 7.9614 0.3152 -0.0035 10 6 9.0566 1.2882 -0.0047 11 6 10.3958 0.5486 -0.0053 12 1 10.4481 -0.1600 -0.8319 13 6 11.5826 1.5470 -0.0527 14 6 12.7251 0.7581 0.6210 15 7 12.1049 -0.2821 1.4547 16 6 12.7772 -1.2103 2.2041 17 1 12.2274 -1.9357 2.7855 18 6 14.1652 -1.2189 2.2167 19 7 14.8352 -0.3351 1.5078 20 14 15.0822 -2.4845 3.2396 21 1 15.3298 -3.6980 2.4203 22 1 16.3794 -1.9151 3.6852 23 1 14.2668 -2.8466 4.4267 24 6 10.6390 -0.1609 1.3502 25 6 5.7111 -1.6343 -0.0015 26 7 4.5152 -2.1619 -0.0001 27 7 3.5553 -1.1441 0.0056 28 6 2.1924 -1.1719 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6780 2.1460 -0.0004 33 1 8.1567 -0.6350 -0.0028 34 1 8.9864 1.9129 -0.8952 35 1 8.9872 1.9143 0.8848 36 1 11.8389 1.7927 -1.0832 37 1 11.3493 2.4502 0.5111 38 1 13.3556 0.2969 -0.1392 39 1 13.3217 1.4268 1.2414 40 1 15.8051 -0.3412 1.5162 41 1 10.2492 0.4430 2.1696 42 1 10.1750 -1.1472 1.3507 43 1 6.6410 -2.1834 -0.0025 44 1 1.6646 -2.1141 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028840216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:32 Heat of formation + Delta-G solvation = 106.504662 kcal Electronic energy + Delta-G solvation = -26829.047849 eV Core-core repulsion = 22977.272785 eV Total energy + Delta-G solvation = -3851.775064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.82508 -39.43894 -38.52484 -37.46983 -34.79271 -34.43401 -33.12862 -32.36312 -30.32599 -29.57689 -28.30306 -27.35582 -25.55574 -25.21569 -23.99465 -22.78020 -22.40510 -20.51946 -19.88095 -19.74972 -18.81303 -17.63853 -17.16940 -16.66091 -16.61326 -15.90059 -15.63422 -15.05810 -14.63617 -14.50587 -14.37793 -14.06931 -13.95020 -13.70864 -13.41823 -13.33629 -12.96776 -12.92441 -12.77559 -12.27594 -11.94901 -11.87240 -11.68192 -11.42028 -11.28745 -10.86610 -10.76335 -10.32495 -10.19083 -10.10031 -9.94311 -9.86646 -9.81603 -9.62865 -9.58659 -8.82563 -8.56523 -8.26814 -6.78975 -5.67745 -3.00982 -0.01462 0.34063 1.52515 1.86410 2.78974 3.30040 3.41580 3.41960 3.46900 3.49033 3.58504 3.74336 3.84715 4.13986 4.32187 4.52451 4.70527 4.73472 4.84400 4.92236 5.11555 5.17530 5.29705 5.31487 5.37374 5.50253 5.52910 5.60649 5.75946 5.80438 5.97933 5.99208 6.15102 6.18040 6.42074 6.55036 6.59991 6.61003 6.78174 6.91800 6.98812 7.21571 7.59969 7.68198 7.75479 7.86965 8.29995 8.50041 9.25871 9.86361 10.52874 11.44005 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.002166 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.064426 B =12921.063428 C =13778.126380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.189 4.189 3 C 0.186 3.814 4 N -0.436 5.436 5 C 0.312 3.688 6 C -0.282 4.282 7 C 0.593 3.407 8 O -0.534 6.534 9 N -0.724 5.724 10 C 0.137 3.863 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.142 3.858 25 C 0.129 3.871 26 N -0.310 5.310 27 N -0.305 5.305 28 C 0.159 3.841 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.035 0.965 43 H 0.207 0.793 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.015 -0.348 -5.905 30.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.195 4.195 3 C 0.003 3.997 4 N -0.145 5.145 5 C 0.081 3.919 6 C -0.299 4.299 7 C 0.380 3.620 8 O -0.412 6.412 9 N -0.375 5.375 10 C 0.014 3.986 11 C -0.137 4.137 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.016 3.984 25 C -0.052 4.052 26 N -0.132 5.132 27 N -0.073 5.073 28 C 0.023 3.977 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.224 0.776 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -29.802 -0.005 -5.839 30.369 hybrid contribution 0.677 -1.254 0.556 1.530 sum -29.126 -1.259 -5.282 29.627 Atomic orbital electron populations 1.20627 0.87360 1.04113 1.03458 1.20625 0.99225 0.92329 1.07346 1.23633 0.88997 0.98614 0.88471 1.68355 1.08423 1.23955 1.13772 1.20397 0.93189 0.81168 0.97193 1.19513 0.90288 0.93632 1.26424 1.16734 0.81570 0.87195 0.76547 1.90829 1.84017 1.16210 1.50095 1.45788 1.05183 1.10529 1.76018 1.21355 0.84295 0.90981 1.02016 1.22614 0.92746 0.98432 0.99921 0.90237 1.22854 0.96237 0.97778 1.00510 1.21137 0.90854 0.89378 0.93355 1.44493 0.99105 1.35655 1.54040 1.19053 0.88940 1.07364 1.20183 0.90507 1.24810 0.96299 0.99175 1.00342 1.69969 1.06183 1.36719 1.44093 0.86120 0.79354 0.80642 0.79651 1.21659 1.21713 1.20747 1.21590 0.86984 0.96818 0.93051 1.24232 0.96692 0.92401 0.91866 1.77627 0.96356 1.08134 1.31064 1.47038 1.06123 1.07976 1.46126 1.21966 0.79353 1.01302 0.95046 0.90170 0.90051 0.90698 0.79936 0.76848 0.91709 0.91379 0.92014 0.92185 0.93603 0.93952 0.93799 0.96241 0.94641 0.77608 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.12 10.03 36.01 0.36 0.24 16 2 C -0.19 -0.96 5.86 -104.86 -0.61 -1.58 16 3 C 0.19 1.36 10.97 -17.05 -0.19 1.18 16 4 N -0.44 -5.53 10.26 -12.00 -0.12 -5.65 16 5 C 0.31 4.20 7.74 -155.84 -1.21 3.00 16 6 C -0.28 -3.91 6.17 -104.65 -0.65 -4.56 16 7 C 0.59 9.42 7.78 -12.89 -0.10 9.32 16 8 O -0.53 -10.44 16.74 5.18 0.09 -10.36 16 9 N -0.72 -10.08 5.44 -61.65 -0.34 -10.42 16 10 C 0.14 2.09 5.12 -4.05 -0.02 2.07 16 11 C -0.12 -1.98 3.07 -88.47 -0.27 -2.26 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -2.51 6.42 -24.89 -0.16 -2.67 16 14 C 0.18 4.34 5.37 -3.06 -0.02 4.32 16 15 N -0.61 -15.54 3.40 -170.03 -0.58 -16.12 16 16 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -27.35 10.31 55.49 0.57 -26.77 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.14 2.88 6.56 -2.50 -0.02 2.86 16 25 C 0.13 1.43 11.44 -17.12 -0.20 1.23 16 26 N -0.31 -3.61 12.58 30.77 0.39 -3.22 16 27 N -0.30 -3.35 3.86 -11.97 -0.05 -3.40 16 28 C 0.16 1.07 10.94 -16.45 -0.18 0.89 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.08 0.01 8.10 -51.93 -0.42 -0.41 16 31 H 0.07 0.02 8.09 -51.93 -0.42 -0.40 16 32 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 33 H 0.40 4.57 7.35 -40.82 -0.30 4.27 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 39 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.02 0.41 7.96 -51.93 -0.41 0.00 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.21 1.52 7.46 -52.49 -0.39 1.12 16 44 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -38.18 369.58 -9.05 -47.23 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.06 Total: -1.26 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -3.50 Total: 7.15 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.12 Total: -65.59 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.18 -9.05 -47.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028840216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.736 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds