Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35339 * 125.69636 * 2 1 4 4 N 1.36158 * 107.14955 * 179.97438 * 3 2 1 5 5 C 1.36218 * 133.94216 * 179.97438 * 4 3 2 6 6 C 1.35479 * 120.53154 * 180.02562 * 5 4 3 7 7 N 1.32688 * 122.11179 * 359.97438 * 6 5 4 8 8 C 1.32295 * 121.18849 * 0.02562 * 7 6 5 9 9 C 1.47797 * 120.59069 * 179.97438 * 8 7 6 10 10 O 1.21559 * 120.00360 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00148 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00306 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47504 * 180.02562 * 12 11 9 14 14 H 1.09006 * 110.64138 * 305.70650 * 13 12 11 15 15 C 1.55156 * 110.72236 * 182.55970 * 13 12 11 16 16 C 1.54907 * 101.58249 * 206.13464 * 15 13 12 17 17 N 1.47430 * 104.83307 * 37.00933 * 16 15 13 18 18 C 1.36930 * 125.64826 * 155.90352 * 17 16 15 19 19 H 1.08008 * 119.99820 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00389 * 359.97438 * 18 17 16 21 21 N 1.31627 * 119.99602 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00481 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46907 * 59.99683 * 22 20 18 24 24 H 1.48500 * 109.47329 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46977 * 299.99968 * 22 20 18 26 26 C 1.47320 * 108.73208 * 335.71398 * 17 16 15 27 27 C 1.37567 * 106.99122 * 0.02562 * 4 3 2 28 28 N 1.31855 * 108.10583 * 0.02562 * 27 4 3 29 29 H 1.09003 * 109.47263 * 269.99765 * 1 2 3 30 30 H 1.09004 * 109.47422 * 30.00254 * 1 2 3 31 31 H 1.09005 * 109.47546 * 149.99991 * 1 2 3 32 32 H 1.07999 * 126.42460 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.73255 * 0.05497 * 5 4 3 34 34 H 1.07997 * 118.94297 * 180.02562 * 6 5 4 35 35 H 0.96997 * 119.99908 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47258 * 300.00690 * 12 11 9 37 37 H 1.09010 * 109.46831 * 59.99849 * 12 11 9 38 38 H 1.09001 * 111.00297 * 324.21089 * 15 13 12 39 39 H 1.09002 * 111.00139 * 88.02192 * 15 13 12 40 40 H 1.08997 * 110.37135 * 155.84824 * 16 15 13 41 41 H 1.09003 * 110.36663 * 278.06406 * 16 15 13 42 42 H 0.97000 * 119.99909 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.06578 * 241.86558 * 26 17 16 44 44 H 1.09004 * 109.84719 * 120.61164 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5875 0.6660 0.0006 5 6 4.7957 1.2952 0.0004 6 6 5.9451 0.5782 0.0006 7 7 5.9487 -0.7487 0.0015 8 6 4.8188 -1.4369 0.0017 9 6 4.8382 -2.9147 0.0022 10 8 3.7936 -3.5363 0.0019 11 7 6.0142 -3.5733 0.0018 12 6 6.0334 -5.0381 0.0017 13 6 7.4824 -5.5292 0.0019 14 1 8.0376 -5.0886 -0.8263 15 6 7.5371 -7.0784 -0.0631 16 6 8.8997 -7.3702 0.6135 17 7 9.0071 -6.3710 1.6922 18 6 9.7661 -6.4979 2.8249 19 1 9.7778 -5.7054 3.5586 20 6 10.5205 -7.6449 3.0300 21 7 10.5058 -8.6108 2.1360 22 14 11.5564 -7.8176 4.5748 23 1 10.6782 -7.7472 5.7702 24 1 12.2607 -9.1248 4.5549 25 1 12.5535 -6.7183 4.6277 26 6 8.1665 -5.2111 1.3482 27 6 3.5502 -0.7091 0.0003 28 7 2.2863 -1.0847 -0.0009 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9651 2.1269 0.0004 33 1 4.8375 2.3744 0.0006 34 1 6.8888 1.1034 0.0009 35 1 6.8478 -3.0773 0.0017 36 1 5.5245 -5.4083 0.8917 37 1 5.5241 -5.4081 -0.8883 38 1 6.7173 -7.5223 0.5019 39 1 7.5305 -7.4266 -1.0960 40 1 8.9094 -8.3783 1.0279 41 1 9.7127 -7.2472 -0.1021 42 1 11.0327 -9.4125 2.2795 43 1 8.7837 -4.3183 1.2487 44 1 7.4123 -5.0587 2.1203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028912792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = 99.419422 kcal Electronic energy + Delta-G solvation = -27024.044807 eV Core-core repulsion = 23171.962504 eV Total energy + Delta-G solvation = -3852.082303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.39164 -39.81685 -38.68710 -37.55368 -34.82937 -34.59867 -32.47765 -32.16826 -30.41325 -29.62484 -28.46167 -28.08687 -25.87821 -24.87912 -23.71592 -23.27298 -21.37744 -20.89222 -20.06113 -19.70033 -18.76296 -18.30731 -16.82924 -16.69399 -16.62686 -16.01185 -15.63599 -15.44212 -14.85748 -14.70877 -14.50817 -14.25356 -13.81635 -13.70334 -13.52977 -13.31666 -12.99975 -12.62487 -12.59129 -12.44931 -11.73574 -11.71413 -11.60589 -11.43790 -10.92004 -10.76574 -10.72393 -10.50052 -10.35516 -10.13293 -10.02170 -9.91315 -9.73103 -9.47252 -9.17511 -8.92969 -8.61055 -8.59483 -6.79184 -5.61480 -3.02844 -0.31684 0.79358 1.88766 2.34672 2.53532 2.87274 3.42008 3.43103 3.47068 3.48533 3.52605 3.67788 3.86252 4.17434 4.51981 4.61248 4.66188 4.75434 4.82659 5.15161 5.29462 5.31401 5.32096 5.33539 5.45945 5.56872 5.60470 5.65666 5.74532 5.94032 6.10985 6.15024 6.15865 6.33110 6.40034 6.45428 6.61622 6.63912 6.77414 6.96637 7.01168 7.45092 7.55711 7.58469 7.66036 7.89805 8.18014 8.40627 9.26197 9.86962 10.52271 11.42453 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.002286 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.522262 B =12246.971466 C =12772.563527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.059 3.941 3 C -0.083 4.083 4 N -0.356 5.356 5 C 0.032 3.968 6 C 0.031 3.969 7 N -0.424 5.424 8 C 0.183 3.817 9 C 0.568 3.432 10 O -0.499 6.499 11 N -0.701 5.701 12 C 0.132 3.868 13 C -0.114 4.114 14 H 0.077 0.923 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.140 3.860 27 C 0.195 3.805 28 N -0.431 5.431 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.190 0.810 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.411 0.589 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.100 22.928 -7.823 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.217 4.217 4 N -0.029 5.029 5 C -0.093 4.093 6 C -0.109 4.109 7 N -0.140 5.140 8 C 0.017 3.983 9 C 0.349 3.651 10 O -0.372 6.372 11 N -0.353 5.353 12 C 0.009 3.991 13 C -0.134 4.134 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.014 3.986 27 C -0.053 4.053 28 N -0.152 5.152 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.207 0.793 33 H 0.193 0.807 34 H 0.204 0.796 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.125 21.271 -7.715 27.217 hybrid contribution 0.693 1.875 0.785 2.147 sum -14.433 23.146 -6.930 28.144 Atomic orbital electron populations 1.20191 0.86195 1.03555 1.03167 1.21326 0.97438 0.87603 1.01099 1.22513 0.80247 1.01476 1.17432 1.42833 1.06338 1.09016 1.44750 1.22773 0.83102 1.00846 1.02578 1.22131 0.97770 0.89206 1.01837 1.68118 1.27308 1.08942 1.09601 1.22282 0.83891 0.95068 0.97028 1.17210 0.84815 0.84118 0.78912 1.90902 1.31651 1.66778 1.47846 1.45893 1.08147 1.08256 1.73048 1.21576 0.97565 0.77455 1.02521 1.22448 0.93410 0.98246 0.99262 0.90438 1.23006 1.01670 0.92522 1.00195 1.21928 0.89525 0.97274 0.88560 1.44570 1.52422 1.15161 1.20940 1.19035 1.18674 1.01571 0.95694 0.90617 1.24785 1.00558 0.96794 0.98647 1.69789 1.44648 1.08087 1.34669 0.86150 0.79969 0.76886 0.82479 1.21192 1.21589 1.21275 1.21399 0.93108 0.91361 0.92733 1.22473 0.94658 0.80247 1.07891 1.70592 0.97725 1.28547 1.18306 0.90367 0.90613 0.90151 0.79293 0.80655 0.79645 0.75290 0.90776 0.91167 0.91761 0.92070 0.87527 0.97032 0.93713 0.96179 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.00 0.38 -0.13 16 2 C 0.06 0.63 7.07 -82.87 -0.59 0.04 16 3 C -0.08 -0.70 11.70 -16.67 -0.19 -0.89 16 4 N -0.36 -3.55 2.95 -61.13 -0.18 -3.73 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.03 16 6 C 0.03 0.23 11.01 -18.17 -0.20 0.03 16 7 N -0.42 -4.79 9.67 -8.68 -0.08 -4.87 16 8 C 0.18 2.53 6.97 -80.54 -0.56 1.97 16 9 C 0.57 8.98 7.81 -12.35 -0.10 8.88 16 10 O -0.50 -9.47 16.23 5.31 0.09 -9.38 16 11 N -0.70 -10.10 5.42 -61.26 -0.33 -10.43 16 12 C 0.13 2.02 5.00 -4.04 -0.02 2.00 16 13 C -0.11 -1.94 2.98 -88.79 -0.26 -2.20 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -2.52 6.54 -24.58 -0.16 -2.68 16 16 C 0.15 3.69 5.89 -2.53 -0.01 3.68 16 17 N -0.60 -15.63 3.40 -169.83 -0.58 -16.21 16 18 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 19 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.14 2.90 6.67 -2.90 -0.02 2.88 16 27 C 0.19 2.70 7.66 -153.98 -1.18 1.52 16 28 N -0.43 -6.45 10.74 -7.53 -0.08 -6.53 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.41 5.38 7.78 -40.82 -0.32 5.06 16 36 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 37 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.03 0.53 7.73 -51.93 -0.40 0.13 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -36.31 368.71 -9.49 -45.80 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.05 Total: 0.80 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -3.36 Total: 8.28 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.70 Total: -68.33 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.31 -9.49 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028912792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.217 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds