Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39956 * 119.94618 * 2 1 4 4 C 1.35755 * 119.35399 * 179.97438 * 3 2 1 5 5 N 1.36312 * 119.15973 * 0.02562 * 4 3 2 6 6 N 1.39904 * 132.16441 * 179.97438 * 5 4 3 7 7 C 1.30703 * 109.51731 * 180.02562 * 6 5 4 8 8 C 1.40638 * 108.72935 * 0.02809 * 7 6 5 9 9 C 1.46581 * 126.54059 * 180.02562 * 8 7 6 10 10 O 1.21711 * 120.00339 * 179.97438 * 9 8 7 11 11 N 1.34784 * 120.00023 * 359.92713 * 9 8 7 12 12 C 1.46500 * 119.99836 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46501 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.88938 * 54.30099 * 13 12 11 15 15 C 1.55162 * 110.99951 * 178.18197 * 13 12 11 16 16 C 1.54324 * 102.94231 * 153.57756 * 15 13 12 17 17 N 1.47027 * 107.27021 * 337.80488 * 16 15 13 18 18 C 1.36937 * 125.64990 * 178.97636 * 17 16 15 19 19 H 1.07999 * 119.99971 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99961 * 359.97202 * 18 17 16 21 21 N 1.31623 * 119.99741 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00184 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47027 * 60.00238 * 22 20 18 24 24 H 1.48499 * 109.47293 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47241 * 300.00534 * 22 20 18 26 26 C 1.47465 * 108.72306 * 358.97710 * 17 16 15 27 27 C 1.36602 * 119.72576 * 0.02562 * 5 4 3 28 28 N 1.31501 * 119.94524 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46853 * 90.00122 * 1 2 3 30 30 H 1.09004 * 109.47248 * 209.99888 * 1 2 3 31 31 H 1.08998 * 109.47289 * 330.00198 * 1 2 3 32 32 H 1.08006 * 120.32430 * 359.97438 * 3 2 1 33 33 H 1.08008 * 120.42138 * 179.72874 * 4 3 2 34 34 H 1.08005 * 125.63094 * 180.02562 * 7 6 5 35 35 H 0.96996 * 119.99497 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47243 * 299.99971 * 12 11 9 37 37 H 1.08990 * 109.46925 * 60.00519 * 12 11 9 38 38 H 1.09006 * 110.71884 * 271.93359 * 15 13 12 39 39 H 1.08996 * 110.72401 * 35.03865 * 15 13 12 40 40 H 1.08999 * 109.88768 * 97.21982 * 16 15 13 41 41 H 1.09001 * 109.88450 * 218.23660 * 16 15 13 42 42 H 0.97003 * 119.99931 * 179.97438 * 21 20 18 43 43 H 1.08998 * 110.35031 * 265.25170 * 26 17 16 44 44 H 1.09002 * 110.40861 * 142.91323 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2057 1.2127 0.0000 4 6 3.5632 1.1987 0.0005 5 7 4.2150 0.0015 0.0005 6 7 5.5748 -0.3274 0.0005 7 6 5.7097 -1.6274 -0.0001 8 6 4.4314 -2.2140 -0.0011 9 6 4.1294 -3.6484 -0.0015 10 8 2.9726 -4.0267 -0.0019 11 7 5.1328 -4.5483 -0.0022 12 6 4.8308 -5.9819 -0.0032 13 6 6.1374 -6.7781 -0.0033 14 1 6.7783 -6.4734 0.8241 15 6 5.8588 -8.3038 0.0417 16 6 7.1107 -8.9038 -0.6323 17 7 7.7068 -7.8482 -1.4642 18 6 8.8464 -7.9706 -2.2136 19 1 9.2039 -7.1326 -2.7935 20 6 9.5421 -9.1717 -2.2277 21 7 9.1060 -10.1931 -1.5212 22 14 11.0962 -9.3390 -3.2504 23 1 12.1012 -8.3478 -2.7893 24 1 11.6454 -10.7100 -3.0957 25 1 10.7773 -9.0923 -4.6795 26 6 6.8745 -6.6354 -1.3583 27 6 3.4971 -1.1606 -0.0006 28 7 2.1635 -1.1395 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6701 2.1506 -0.0004 33 1 4.1197 2.1244 -0.0039 34 1 6.6477 -2.1627 0.0002 35 1 6.0546 -4.2468 -0.0022 36 1 4.2533 -6.2322 0.8867 37 1 4.2532 -6.2309 -0.8932 38 1 5.7722 -8.6498 1.0717 39 1 4.9590 -8.5484 -0.5228 40 1 7.8236 -9.2237 0.1276 41 1 6.8261 -9.7526 -1.2542 42 1 9.5919 -11.0326 -1.5313 43 1 6.1571 -6.5953 -2.1780 44 1 7.5009 -5.7434 -1.3573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028936815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = 107.198568 kcal Electronic energy + Delta-G solvation = -26918.172891 eV Core-core repulsion = 23066.427917 eV Total energy + Delta-G solvation = -3851.744974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.79250 -39.41363 -38.53274 -37.46546 -34.55348 -34.45924 -32.65072 -32.36872 -30.40060 -29.51792 -28.73816 -28.03417 -25.61938 -24.58122 -23.69107 -22.82851 -22.54714 -20.47163 -19.87626 -19.72792 -18.72454 -17.59249 -17.03795 -16.64722 -16.59494 -15.80975 -15.65055 -15.02639 -14.70046 -14.61536 -14.35728 -14.17036 -14.02297 -13.73105 -13.35078 -13.18584 -12.93384 -12.79190 -12.27394 -12.24110 -11.95272 -11.85215 -11.69253 -11.53592 -11.29291 -10.86471 -10.74616 -10.31759 -10.16363 -10.11512 -9.94430 -9.91677 -9.81027 -9.61896 -9.57555 -8.81573 -8.55899 -8.26680 -6.78730 -5.67317 -3.00612 -0.00083 0.38561 1.55416 1.88447 2.79743 3.29545 3.35511 3.42826 3.46952 3.48346 3.60100 3.75157 3.81637 4.29524 4.52775 4.55603 4.69404 4.76580 4.88896 5.06544 5.11209 5.18533 5.29596 5.32234 5.38743 5.50862 5.61087 5.65693 5.76682 5.85510 5.98478 6.02544 6.15631 6.18844 6.42481 6.55486 6.60653 6.61651 6.78921 6.94006 6.99292 7.28304 7.59916 7.68466 7.77024 7.87107 8.30450 8.51818 9.26220 9.86730 10.53298 11.44378 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002237 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.431786 B =12516.251425 C =13391.352836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.208 3.792 3 C -0.221 4.221 4 C 0.168 3.832 5 N -0.312 5.312 6 N -0.311 5.311 7 C 0.131 3.869 8 C -0.286 4.286 9 C 0.593 3.407 10 O -0.535 6.535 11 N -0.724 5.724 12 C 0.137 3.863 13 C -0.117 4.117 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.178 3.822 17 N -0.607 5.607 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.142 3.858 27 C 0.323 3.677 28 N -0.443 5.443 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.207 0.793 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 25.349 5.931 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.045 3.955 3 C -0.245 4.245 4 C 0.032 3.968 5 N -0.081 5.081 6 N -0.133 5.133 7 C -0.050 4.050 8 C -0.303 4.303 9 C 0.380 3.620 10 O -0.412 6.412 11 N -0.376 5.376 12 C 0.014 3.986 13 C -0.137 4.137 14 H 0.098 0.902 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.333 5.333 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.016 3.984 27 C 0.091 3.909 28 N -0.156 5.156 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.224 0.776 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.431 25.022 5.881 29.980 hybrid contribution 1.485 0.107 -0.576 1.596 sum -13.946 25.128 5.305 29.224 Atomic orbital electron populations 1.20868 0.86683 1.04737 1.04344 1.22133 0.98313 0.87400 0.87625 1.21774 0.92439 1.01413 1.08850 1.22126 0.92697 0.88519 0.93426 1.47055 1.07821 1.06422 1.46799 1.77613 0.88569 1.15936 1.31171 1.24225 0.98460 0.90634 0.91719 1.19486 0.90464 0.93398 1.26936 1.16731 0.85184 0.83573 0.76511 1.90827 1.19704 1.80536 1.50133 1.45787 1.08961 1.06736 1.76074 1.21349 0.97189 0.78097 1.01994 1.22615 0.95035 0.96145 0.99919 0.90239 1.22854 1.00507 0.93511 1.00503 1.21136 0.89694 0.90516 0.93370 1.44488 1.26721 1.07971 1.54123 1.19009 0.98955 0.97355 1.20312 0.90560 1.24807 0.99371 0.96084 1.00310 1.69960 1.40298 1.02640 1.44100 0.86198 0.82926 0.76774 0.79851 1.21210 1.21635 1.21223 1.21587 0.92881 0.90911 0.93050 1.20360 0.87885 0.86232 0.96407 1.68189 1.03694 1.28263 1.15431 0.88917 0.89180 0.89530 0.81191 0.79868 0.77647 0.76865 0.91729 0.91401 0.92019 0.92189 0.93612 0.93956 0.93742 0.96254 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.19 36.01 0.37 -0.13 16 2 C 0.21 1.67 6.83 -82.09 -0.56 1.11 16 3 C -0.22 -1.09 9.72 -39.83 -0.39 -1.47 16 4 C 0.17 1.09 11.29 -16.45 -0.19 0.90 16 5 N -0.31 -3.44 3.86 -11.97 -0.05 -3.49 16 6 N -0.31 -3.63 12.58 30.77 0.39 -3.24 16 7 C 0.13 1.46 11.44 -17.13 -0.20 1.26 16 8 C -0.29 -4.01 6.17 -104.66 -0.65 -4.65 16 9 C 0.59 9.48 7.78 -12.89 -0.10 9.38 16 10 O -0.53 -10.49 16.74 5.18 0.09 -10.40 16 11 N -0.72 -10.14 5.44 -61.65 -0.34 -10.48 16 12 C 0.14 2.10 5.12 -4.04 -0.02 2.08 16 13 C -0.12 -1.99 3.07 -88.47 -0.27 -2.26 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.13 -2.51 6.42 -24.89 -0.16 -2.67 16 16 C 0.18 4.35 5.37 -3.06 -0.02 4.33 16 17 N -0.61 -15.58 3.40 -170.03 -0.58 -16.16 16 18 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.39 10.31 55.49 0.57 -26.81 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.14 2.89 6.56 -2.51 -0.02 2.87 16 27 C 0.32 4.41 7.74 -155.83 -1.21 3.20 16 28 N -0.44 -5.78 10.18 -8.25 -0.08 -5.87 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.13 8.09 -51.93 -0.42 -0.29 16 32 H 0.17 0.09 8.06 -52.48 -0.42 -0.34 16 33 H 0.18 0.49 8.06 -52.48 -0.42 0.06 16 34 H 0.21 1.53 7.46 -52.48 -0.39 1.14 16 35 H 0.40 4.61 7.35 -40.82 -0.30 4.31 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 41 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.02 0.41 7.96 -51.93 -0.41 0.00 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -38.36 369.79 -9.16 -47.52 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.06 Total: -0.93 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -3.65 Total: 7.03 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.08 Total: -66.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.36 -9.16 -47.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028936815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.716 kcal (2) G-P(sol) polarization free energy of solvation -38.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds