Wall clock time and date at job start Tue Mar 31 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47745 * 347.19091 * 3 2 1 5 5 C 1.35425 * 117.00402 * 180.02562 * 4 3 2 6 6 N 1.32236 * 119.80041 * 0.02562 * 5 4 3 7 7 C 1.31874 * 121.80155 * 180.02562 * 6 5 4 8 8 C 1.38358 * 121.18610 * 0.02562 * 7 6 5 9 9 C 1.38327 * 119.45782 * 359.97438 * 8 7 6 10 10 C 1.39989 * 118.35168 * 0.28041 * 9 8 7 11 11 C 1.47520 * 120.59661 * 179.70406 * 10 9 8 12 12 O 1.21593 * 119.99577 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00403 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00248 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47120 * 180.02562 * 14 13 11 16 16 H 1.08998 * 110.64254 * 308.14479 * 15 14 13 17 17 C 1.55164 * 110.72014 * 184.99993 * 15 14 13 18 18 C 1.54906 * 101.58158 * 206.13592 * 17 15 14 19 19 N 1.47425 * 104.83453 * 37.00742 * 18 17 15 20 20 C 1.36938 * 125.64892 * 155.83004 * 19 18 17 21 21 H 1.07994 * 120.00280 * 353.86331 * 20 19 18 22 22 C 1.38815 * 119.99626 * 173.85397 * 20 19 18 23 23 N 1.31618 * 120.00652 * 6.81822 * 22 20 19 24 24 Si 1.86808 * 119.99616 * 186.81084 * 22 20 19 25 25 H 1.48500 * 109.46702 * 94.99183 * 24 22 20 26 26 H 1.48495 * 109.47231 * 214.98875 * 24 22 20 27 27 H 1.48497 * 109.47253 * 334.99391 * 24 22 20 28 28 C 1.47022 * 108.70460 * 335.87264 * 19 18 17 29 29 H 4.38445 * 5.44441 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46475 * 227.19195 * 3 2 1 31 31 H 1.09003 * 109.47341 * 107.19848 * 3 2 1 32 32 H 1.08000 * 119.40607 * 179.97438 * 7 6 5 33 33 H 1.08006 * 120.26891 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.82668 * 180.02562 * 9 8 7 35 35 H 0.96997 * 119.99777 * 0.02562 * 13 11 10 36 36 H 1.09001 * 109.47199 * 300.00526 * 14 13 11 37 37 H 1.09006 * 109.47266 * 60.00063 * 14 13 11 38 38 H 1.09004 * 111.00233 * 324.21129 * 17 15 14 39 39 H 1.08994 * 111.00250 * 88.02490 * 17 15 14 40 40 H 1.08996 * 110.36769 * 155.84633 * 18 17 15 41 41 H 1.08997 * 110.36945 * 278.16945 * 18 17 15 42 42 H 0.96994 * 120.00031 * 179.97438 * 23 22 20 43 43 H 1.08994 * 109.88582 * 241.64183 * 28 19 18 44 44 H 1.09004 * 109.88569 * 120.47055 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3128 0.2987 5 6 4.4657 -1.4850 0.3385 6 7 5.2670 -0.4591 0.1064 7 6 6.5797 -0.5823 0.1346 8 6 7.1794 -1.7984 0.4096 9 6 6.3888 -2.9056 0.6601 10 6 4.9980 -2.7522 0.6194 11 6 4.1081 -3.9012 0.8724 12 8 2.9015 -3.7555 0.8348 13 7 4.6325 -5.1125 1.1453 14 6 3.7487 -6.2537 1.3960 15 6 4.5915 -7.4989 1.6786 16 1 5.3329 -7.6474 0.8935 17 6 3.6879 -8.7518 1.8246 18 6 4.5574 -9.6584 2.7310 19 7 5.2112 -8.7331 3.6744 20 6 5.6857 -9.0626 4.9159 21 1 5.5076 -10.0490 5.3179 22 6 6.3959 -8.1287 5.6578 23 7 6.4987 -6.8884 5.2296 24 14 7.2057 -8.6323 7.2641 25 1 8.6255 -8.9875 7.0125 26 1 7.1410 -7.5032 8.2264 27 1 6.4945 -9.8065 7.8302 28 6 5.2683 -7.3978 3.0619 29 1 -1.0498 -0.0005 -0.0001 30 1 3.0089 0.6992 0.7540 31 1 3.0092 0.3047 -0.9817 32 1 7.1977 0.2815 -0.0613 33 1 8.2560 -1.8827 0.4285 34 1 6.8336 -3.8654 0.8776 35 1 5.5950 -5.2286 1.1757 36 1 3.1156 -6.0407 2.2574 37 1 3.1237 -6.4286 0.5202 38 1 2.7462 -8.4997 2.3123 39 1 3.5110 -9.2208 0.8567 40 1 3.9307 -10.3691 3.2696 41 1 5.3044 -10.1845 2.1367 42 1 6.9946 -6.2358 5.7482 43 1 6.3067 -7.0878 2.9447 44 1 4.7333 -6.6810 3.6848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028937647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:15 Heat of formation + Delta-G solvation = 52.603085 kcal Electronic energy + Delta-G solvation = -27241.452437 eV Core-core repulsion = 23355.047274 eV Total energy + Delta-G solvation = -3886.405163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04003 -39.11190 -38.21589 -37.53146 -34.50499 -33.59873 -33.04002 -32.31808 -30.90017 -29.84657 -27.99976 -27.58715 -25.80250 -24.65023 -23.56204 -22.90698 -20.78086 -20.03164 -19.68697 -18.83738 -18.62732 -17.48896 -16.98553 -16.79430 -16.45512 -15.74002 -15.28256 -15.23038 -14.72038 -14.60241 -14.39616 -14.06323 -13.78243 -13.72692 -13.10814 -13.08173 -12.75239 -12.41795 -12.39301 -11.96272 -11.79233 -11.63567 -11.57707 -10.91177 -10.89191 -10.80775 -10.52238 -10.34822 -10.16147 -10.14633 -10.06788 -9.94799 -9.91402 -9.63236 -9.51791 -8.83617 -8.62458 -8.58446 -6.83441 -5.74504 -3.05964 0.53916 1.04252 2.05460 2.60007 2.97302 3.26982 3.38495 3.39072 3.44535 3.46345 3.75150 4.02555 4.17951 4.49191 4.57507 4.66039 4.81043 4.99240 5.14055 5.15755 5.16876 5.32122 5.38251 5.41726 5.53254 5.61083 5.68196 5.71441 5.85500 5.94767 6.08817 6.09273 6.12295 6.32535 6.43077 6.59590 6.65715 6.73877 6.95135 7.02802 7.35071 7.49933 7.53230 7.54505 7.76574 7.78842 8.23990 8.45921 9.20521 9.81260 10.47967 11.37889 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.002844 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.557568 B = 9841.308052 C =10701.648499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.197 4.197 3 C 0.179 3.821 4 O -0.263 6.263 5 C 0.372 3.628 6 N -0.549 5.549 7 C 0.162 3.838 8 C -0.217 4.217 9 C -0.004 4.004 10 C -0.200 4.200 11 C 0.560 3.440 12 O -0.522 6.522 13 N -0.717 5.717 14 C 0.139 3.861 15 C -0.133 4.133 16 H 0.072 0.928 17 C -0.122 4.122 18 C 0.133 3.867 19 N -0.607 5.607 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.185 3.815 29 H 0.224 0.776 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.019 0.981 42 H 0.251 0.749 43 H 0.043 0.957 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 12.822 -14.158 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.197 4.197 3 C 0.104 3.896 4 O -0.168 6.168 5 C 0.192 3.808 6 N -0.273 5.273 7 C 0.006 3.994 8 C -0.237 4.237 9 C -0.030 4.030 10 C -0.207 4.207 11 C 0.345 3.655 12 O -0.398 6.398 13 N -0.369 5.369 14 C 0.016 3.984 15 C -0.152 4.152 16 H 0.090 0.910 17 C -0.161 4.161 18 C 0.007 3.993 19 N -0.334 5.334 20 C -0.356 4.356 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.060 3.940 29 H 0.241 0.759 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.013 13.624 -14.133 19.860 hybrid contribution 1.338 -0.828 1.111 1.926 sum -1.675 12.796 -13.022 18.334 Atomic orbital electron populations 1.24963 0.95821 0.96712 1.00338 1.22314 0.93619 1.02734 1.01069 1.19132 0.84387 0.83535 1.02518 1.86578 1.16052 1.31051 1.83128 1.19725 0.84021 0.88628 0.88467 1.67452 1.06810 1.31626 1.21424 1.22631 0.89017 0.97313 0.90453 1.21959 1.01908 0.93543 1.06300 1.21760 0.91127 1.00006 0.90148 1.20100 0.94355 0.93430 1.12774 1.17727 0.87718 0.82357 0.77666 1.90831 1.14139 1.84043 1.50833 1.45871 1.10758 1.08721 1.71500 1.21365 0.92311 0.83929 1.00814 1.22772 0.97902 0.93376 1.01179 0.91006 1.22699 0.98431 0.95811 0.99206 1.21555 0.93565 0.92859 0.91300 1.44489 1.69456 1.04783 1.14672 1.19077 1.27219 0.98088 0.91225 0.90439 1.24805 1.00681 0.95796 0.99124 1.69954 1.45782 1.01728 1.39308 0.86126 0.79559 0.77350 0.82924 1.21664 1.21801 1.20658 1.21212 0.98045 0.87780 0.86923 0.75945 0.89099 0.89162 0.81803 0.83690 0.83330 0.76492 0.91185 0.92052 0.91411 0.91969 0.94283 0.96367 0.93845 0.93918 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.20 -2.48 13.73 -37.12 -0.51 -2.99 16 3 C 0.18 2.15 5.78 34.37 0.20 2.35 16 4 O -0.26 -4.13 8.17 -39.74 -0.32 -4.46 16 5 C 0.37 5.33 7.51 -16.61 -0.12 5.20 16 6 N -0.55 -6.48 9.21 -12.98 -0.12 -6.60 16 7 C 0.16 1.44 11.17 -17.49 -0.20 1.24 16 8 C -0.22 -1.86 10.09 -39.50 -0.40 -2.26 16 9 C 0.00 -0.05 9.64 -38.89 -0.37 -0.42 16 10 C -0.20 -2.86 5.90 -104.69 -0.62 -3.47 16 11 C 0.56 9.47 7.77 -12.48 -0.10 9.37 16 12 O -0.52 -10.65 15.19 -16.49 -0.25 -10.90 16 13 N -0.72 -11.12 5.42 -61.35 -0.33 -11.45 16 14 C 0.14 2.31 5.02 -4.05 -0.02 2.29 16 15 C -0.13 -2.31 2.96 -88.78 -0.26 -2.57 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.12 -2.06 6.53 -24.58 -0.16 -2.22 16 18 C 0.13 2.70 7.23 -2.53 -0.02 2.69 16 19 N -0.61 -15.28 3.39 -170.08 -0.58 -15.86 16 20 C -0.23 -6.31 10.26 -15.06 -0.15 -6.46 16 21 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 23 N -0.92 -26.38 10.36 55.49 0.58 -25.81 16 24 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.19 4.26 4.89 -3.06 -0.01 4.25 16 29 H 0.22 1.45 7.80 -54.10 -0.42 1.03 16 30 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.15 1.35 6.52 -52.48 -0.34 1.01 16 35 H 0.40 5.43 6.57 -40.82 -0.27 5.17 16 36 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.04 1.07 7.36 -51.93 -0.38 0.69 16 44 H 0.05 1.20 7.09 -51.93 -0.37 0.83 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -35.23 376.35 -8.62 -43.85 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.96 Total: 3.11 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.28 Total: 5.53 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.45 Total: -59.72 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.58 Total: -15.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.23 -8.62 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028937647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.455 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds