Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38848 * 125.50277 * 2 1 4 4 C 1.38703 * 107.67655 * 180.02562 * 3 2 1 5 5 N 1.34150 * 132.25339 * 180.02562 * 4 3 2 6 6 C 1.30892 * 121.17030 * 179.97438 * 5 4 3 7 7 C 1.41541 * 120.07589 * 359.97438 * 6 5 4 8 8 C 1.47595 * 120.50971 * 179.97438 * 7 6 5 9 9 O 1.21587 * 120.00223 * 173.81131 * 8 7 6 10 10 N 1.34781 * 119.99693 * 353.81478 * 8 7 6 11 11 C 1.46504 * 119.99950 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46915 * 179.97438 * 11 10 8 13 13 C 1.53941 * 113.74131 * 273.73762 * 12 11 10 14 14 N 1.47812 * 86.03933 * 222.08512 * 13 12 11 15 15 C 1.36935 * 134.45695 * 204.64340 * 14 13 12 16 16 H 1.08001 * 119.99781 * 179.87212 * 15 14 13 17 17 C 1.38816 * 120.00230 * 359.87079 * 15 14 13 18 18 N 1.31616 * 119.99551 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99776 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47204 * 89.99979 * 19 17 15 21 21 H 1.48506 * 109.46812 * 209.99840 * 19 17 15 22 22 H 1.48502 * 109.47317 * 329.99500 * 19 17 15 23 23 C 1.47584 * 91.04846 * 24.55243 * 14 13 12 24 24 C 1.38068 * 118.98978 * 0.27378 * 7 6 5 25 25 C 1.50697 * 120.55698 * 179.72556 * 24 7 6 26 26 N 1.36074 * 118.89360 * 359.49760 * 24 7 6 27 27 N 1.31285 * 125.50829 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46945 * 90.00466 * 1 2 3 29 29 H 1.09004 * 109.46918 * 210.00559 * 1 2 3 30 30 H 1.09004 * 109.47088 * 330.00257 * 1 2 3 31 31 H 1.08003 * 126.15986 * 0.02562 * 3 2 1 32 32 H 1.08009 * 119.96173 * 179.97438 * 6 5 4 33 33 H 0.96995 * 120.00057 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.47024 * 300.00080 * 11 10 8 35 35 H 1.09000 * 109.46800 * 59.99893 * 11 10 8 36 36 H 1.08999 * 112.94468 * 45.33625 * 12 11 10 37 37 H 1.08999 * 113.77105 * 336.35665 * 13 12 11 38 38 H 1.09011 * 113.76943 * 107.74721 * 13 12 11 39 39 H 0.97001 * 119.99598 * 179.97438 * 18 17 15 40 40 H 1.08995 * 113.76583 * 221.15228 * 23 14 13 41 41 H 1.08994 * 113.76884 * 89.75279 * 23 14 13 42 42 H 1.09001 * 109.47378 * 83.48892 * 25 24 7 43 43 H 1.09000 * 109.47596 * 203.48468 * 25 24 7 44 44 H 1.09004 * 109.47169 * 323.49492 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3134 1.1303 0.0000 4 6 3.6338 0.7057 -0.0006 5 7 4.7965 1.3749 -0.0004 6 6 5.9423 0.7421 -0.0006 7 6 5.9712 -0.6730 -0.0005 8 6 7.2577 -1.3963 -0.0012 9 8 7.2748 -2.6067 0.1124 10 7 8.4137 -0.7149 -0.1279 11 6 9.6909 -1.4327 -0.1281 12 6 10.8379 -0.4326 -0.2851 13 6 11.1669 -0.0917 -1.7499 14 7 12.5856 -0.1859 -1.3459 15 6 13.7555 0.3432 -1.8219 16 1 14.6902 0.1154 -1.3312 17 6 13.7400 1.1723 -2.9351 18 7 12.6009 1.4494 -3.5334 19 14 15.3361 1.8934 -3.5848 20 1 15.9236 0.9706 -4.5888 21 1 15.0629 3.2075 -4.2204 22 1 16.2903 2.0757 -2.4616 23 6 12.2348 -1.0768 -0.2227 24 6 4.7774 -1.3666 -0.0059 25 6 4.7668 -2.8735 -0.0122 26 7 3.6104 -0.6668 -0.0008 27 7 2.2696 -1.0687 -0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9736 2.1555 0.0004 32 1 6.8669 1.3005 -0.0008 33 1 8.4001 0.2507 -0.2188 34 1 9.8047 -1.9721 0.8123 35 1 9.7099 -2.1401 -0.9572 36 1 10.7293 0.4426 0.3554 37 1 10.8601 -0.8602 -2.4593 38 1 10.8592 0.9108 -2.0474 39 1 12.5900 2.0291 -4.3111 40 1 12.7782 -0.8593 0.6967 41 1 12.2424 -2.1352 -0.4827 42 1 4.8786 -3.2419 1.0076 43 1 3.8227 -3.2287 -0.4252 44 1 5.5917 -3.2401 -0.6233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031887805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 137.333238 kcal Electronic energy + Delta-G solvation = -26898.531360 eV Core-core repulsion = 23048.093123 eV Total energy + Delta-G solvation = -3850.438237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.71237 -40.12017 -38.35453 -37.82511 -35.44188 -34.46078 -32.75867 -32.19955 -30.13948 -29.47224 -28.61245 -28.25517 -25.85283 -24.84679 -24.21371 -23.07579 -21.98298 -21.29689 -20.38753 -19.22190 -18.58949 -17.68077 -17.10896 -16.72389 -16.65205 -15.83321 -15.43481 -15.21053 -14.86708 -14.58043 -14.15567 -14.03855 -13.82340 -13.54370 -13.43560 -13.38003 -13.31647 -13.05889 -12.84745 -12.64066 -12.50548 -12.35322 -11.52061 -11.45503 -11.37721 -11.04663 -10.96303 -10.75012 -10.64902 -10.39092 -10.00775 -9.83545 -9.74673 -9.72691 -9.48641 -9.00476 -8.83677 -8.21652 -6.92333 -5.80913 -3.13037 0.08137 0.32251 1.55015 2.07877 2.64348 3.05953 3.26296 3.36926 3.41910 3.43770 3.45610 3.68182 3.86431 4.36761 4.41826 4.52183 4.63218 4.88908 4.98196 5.11385 5.12728 5.15358 5.21154 5.22950 5.26862 5.30707 5.33746 5.55407 5.58814 5.73645 5.75617 5.77943 5.93668 6.02757 6.15126 6.22978 6.28162 6.43531 6.56417 6.66143 7.06458 7.16412 7.26318 7.29211 7.40380 7.50602 7.94135 8.04722 9.00946 9.67134 10.55237 11.36309 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.002203 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.957373 B =12707.579330 C =13564.559069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.120 3.880 3 C -0.261 4.261 4 C 0.265 3.735 5 N -0.470 5.470 6 C 0.215 3.785 7 C -0.259 4.259 8 C 0.577 3.423 9 O -0.535 6.535 10 N -0.711 5.711 11 C 0.131 3.869 12 C -0.155 4.155 13 C 0.168 3.832 14 N -0.613 5.613 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.129 3.871 24 C 0.272 3.728 25 C -0.125 4.125 26 N -0.317 5.317 27 N -0.308 5.308 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.184 0.816 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.036 0.964 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.151 -3.329 9.106 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 C -0.291 4.291 4 C 0.041 3.959 5 N -0.181 5.181 6 C 0.029 3.971 7 C -0.269 4.269 8 C 0.362 3.638 9 O -0.414 6.414 10 N -0.361 5.361 11 C 0.008 3.992 12 C -0.175 4.175 13 C 0.042 3.958 14 N -0.339 5.339 15 C -0.351 4.351 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.002 3.998 24 C 0.153 3.847 25 C -0.181 4.181 26 N -0.087 5.087 27 N -0.132 5.132 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.182 0.818 32 H 0.201 0.799 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.256 -4.336 8.967 24.383 hybrid contribution 1.055 1.006 -0.601 1.577 sum -21.202 -3.330 8.365 23.034 Atomic orbital electron populations 1.20320 0.85244 1.04073 1.03782 1.22418 0.97506 0.90056 0.94050 1.20932 0.87452 1.00438 1.20295 1.20858 0.95049 0.80155 0.99858 1.68145 0.96018 1.36436 1.17495 1.23543 0.96539 0.90187 0.86788 1.20450 0.93559 0.95108 1.17769 1.17276 0.82679 0.86689 0.77124 1.90747 1.86904 1.13248 1.50524 1.45890 1.05846 1.11194 1.73184 1.21549 0.80537 0.95092 1.02054 1.23841 0.93291 0.98249 1.02100 1.22371 0.83822 1.00208 0.89367 1.45977 1.03489 1.52761 1.31652 1.19026 0.84725 1.22241 1.09078 0.90236 1.24785 0.97213 1.00503 0.98000 1.69801 1.23795 1.40511 1.22807 0.86119 0.82472 0.78369 0.78801 1.21629 1.21611 1.20599 1.22480 0.90889 0.94016 0.92373 1.21166 0.81144 0.96466 0.85883 1.21384 1.05642 0.85248 1.05875 1.47074 1.06034 1.07268 1.48328 1.77817 0.82367 1.21422 1.31628 0.89600 0.90255 0.89579 0.81783 0.79908 0.76297 0.91460 0.90957 0.89045 0.95455 0.90910 0.93627 0.93594 0.94610 0.88032 0.90096 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.43 36.01 0.38 -0.05 16 2 C 0.12 1.21 7.16 -82.60 -0.59 0.62 16 3 C -0.26 -2.85 10.83 -39.18 -0.42 -3.27 16 4 C 0.27 3.43 7.91 -155.32 -1.23 2.20 16 5 N -0.47 -5.85 10.45 -11.91 -0.12 -5.98 16 6 C 0.21 2.25 10.76 -16.69 -0.18 2.08 16 7 C -0.26 -2.95 5.88 -104.88 -0.62 -3.57 16 8 C 0.58 7.14 7.70 -12.44 -0.10 7.04 16 9 O -0.54 -7.77 13.41 5.29 0.07 -7.70 16 10 N -0.71 -8.27 5.51 -61.32 -0.34 -8.61 16 11 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 12 C -0.15 -2.51 3.93 -89.70 -0.35 -2.86 16 13 C 0.17 3.63 7.08 -2.84 -0.02 3.61 16 14 N -0.61 -15.09 3.70 -177.69 -0.66 -15.75 16 15 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -26.73 11.39 55.49 0.63 -26.10 16 19 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.13 2.44 8.51 -2.96 -0.03 2.42 16 24 C 0.27 3.27 6.93 -80.77 -0.56 2.71 16 25 C -0.13 -1.30 8.83 36.00 0.32 -0.99 16 26 N -0.32 -4.08 3.88 -7.99 -0.03 -4.11 16 27 N -0.31 -3.80 12.37 33.54 0.42 -3.39 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.18 1.32 6.52 -52.48 -0.34 0.98 16 33 H 0.40 3.88 6.59 -40.82 -0.27 3.61 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 38 H 0.07 1.74 7.17 -51.92 -0.37 1.37 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 44 H 0.12 1.39 5.90 -51.93 -0.31 1.08 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -34.11 368.49 -9.06 -43.17 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.87 Total: 1.03 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.68 Total: 5.07 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.10 Total: -63.93 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.11 -9.06 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031887805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.498 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds