Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39964 * 120.31842 * 2 1 4 4 N 1.31506 * 120.10177 * 180.02562 * 3 2 1 5 5 C 1.33377 * 120.85441 * 359.97438 * 4 3 2 6 6 C 1.40801 * 132.47832 * 179.97438 * 5 4 3 7 7 C 1.46586 * 126.54014 * 0.02562 * 6 5 4 8 8 O 1.21714 * 119.99856 * 8.29151 * 7 6 5 9 9 N 1.34778 * 120.00135 * 188.28964 * 7 6 5 10 10 C 1.46499 * 119.99758 * 6.53918 * 9 7 6 11 11 C 1.46494 * 119.99730 * 186.53878 * 9 7 6 12 12 H 1.09001 * 110.89093 * 3.88208 * 11 9 7 13 13 C 1.55152 * 111.00555 * 239.99811 * 11 9 7 14 14 C 1.54327 * 102.94566 * 206.42672 * 13 11 9 15 15 N 1.47026 * 107.27006 * 22.19100 * 14 13 11 16 16 C 1.36933 * 125.64840 * 181.01915 * 15 14 13 17 17 H 1.07993 * 120.00052 * 176.00744 * 16 15 14 18 18 C 1.38814 * 119.99899 * 356.01565 * 16 15 14 19 19 N 1.31618 * 119.99858 * 212.61605 * 18 16 15 20 20 Si 1.86800 * 120.00257 * 32.34133 * 18 16 15 21 21 H 1.48502 * 109.47127 * 275.95854 * 20 18 16 22 22 H 1.48504 * 109.46967 * 35.95391 * 20 18 16 23 23 H 1.48497 * 109.46983 * 155.95231 * 20 18 16 24 24 C 1.47422 * 108.70027 * 1.28862 * 15 14 13 25 25 C 1.40651 * 106.92195 * 180.27709 * 6 5 4 26 26 N 1.30696 * 108.72544 * 359.58669 * 25 6 5 27 27 N 1.36597 * 120.79847 * 0.02562 * 5 4 3 28 28 C 1.35746 * 120.32069 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47111 * 269.97266 * 1 2 3 30 30 H 1.09002 * 109.47571 * 29.97344 * 1 2 3 31 31 H 1.09002 * 109.47768 * 149.97436 * 1 2 3 32 32 H 1.07997 * 119.94967 * 0.02945 * 3 2 1 33 33 H 1.09003 * 109.46841 * 275.91267 * 10 9 7 34 34 H 1.08997 * 109.47290 * 35.91266 * 10 9 7 35 35 H 1.09006 * 109.46694 * 155.91760 * 10 9 7 36 36 H 1.09004 * 110.72280 * 88.06403 * 13 11 9 37 37 H 1.09004 * 110.87449 * 324.86315 * 13 11 9 38 38 H 1.08998 * 109.87952 * 262.77525 * 14 13 11 39 39 H 1.08994 * 110.01206 * 141.68289 * 14 13 11 40 40 H 0.97004 * 119.99923 * 354.71286 * 19 18 16 41 41 H 1.09000 * 110.36776 * 94.48375 * 24 15 14 42 42 H 1.09001 * 110.36768 * 216.79946 * 24 15 14 43 43 H 1.08002 * 125.63122 * 179.73496 * 25 6 5 44 44 H 1.07999 * 120.42934 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2082 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0557 -0.0005 6 6 5.5863 -0.2333 -0.0015 7 6 6.6822 0.7403 -0.0022 8 8 6.4444 1.9243 0.1499 9 7 7.9530 0.3245 -0.1714 10 6 8.2278 -1.0772 -0.4968 11 6 9.0594 1.2742 -0.0297 12 1 8.6938 2.2536 0.2790 13 6 9.8775 1.3750 -1.3442 14 6 11.2751 1.8038 -0.8495 15 7 11.3770 1.4121 0.5640 16 6 12.4561 1.6330 1.3775 17 1 12.4087 1.3637 2.4222 18 6 13.6107 2.2032 0.8593 19 7 14.7865 1.8654 1.3448 20 14 13.4964 3.4443 -0.5321 21 1 13.4145 2.7269 -1.8298 22 1 12.2823 4.2801 -0.3513 23 1 14.7011 4.3123 -0.5214 24 6 10.1275 0.7364 0.9584 25 6 5.7109 -1.6342 -0.0074 26 7 4.5152 -2.1618 -0.0010 27 7 3.5552 -1.1441 -0.0005 28 6 2.1923 -1.1718 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3635 -0.8897 -0.5142 32 1 1.6779 2.1460 0.0005 33 1 8.2530 -1.6650 0.4208 34 1 7.4441 -1.4586 -1.1513 35 1 9.1909 -1.1508 -1.0020 36 1 9.4537 2.1309 -2.0053 37 1 9.9260 0.4088 -1.8465 38 1 11.3863 2.8840 -0.9438 39 1 12.0473 1.2997 -1.4305 40 1 14.8428 1.2774 2.1142 41 1 10.2320 -0.3438 0.8568 42 1 9.8619 0.9979 1.9828 43 1 6.6410 -2.1832 -0.0136 44 1 1.6646 -2.1141 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033470951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = 144.957558 kcal Electronic energy + Delta-G solvation = -27752.047897 eV Core-core repulsion = 23901.940276 eV Total energy + Delta-G solvation = -3850.107621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.85021 -39.84868 -38.59593 -37.38527 -34.96486 -34.74632 -33.11862 -32.22826 -30.23026 -29.39787 -28.37576 -27.19789 -27.02074 -25.24826 -24.19244 -23.15300 -22.26584 -20.94752 -20.35827 -19.36894 -18.53336 -17.60992 -17.42180 -17.09863 -16.61906 -16.08236 -15.57231 -15.09015 -14.97546 -14.48025 -14.30879 -14.09538 -14.08593 -13.47669 -13.38510 -13.26561 -13.01305 -12.97966 -12.87475 -12.75445 -12.44128 -11.93315 -11.84765 -11.77346 -11.39044 -11.19105 -10.95902 -10.86375 -10.59656 -10.18687 -9.96897 -9.85197 -9.64295 -9.56670 -9.17169 -8.46450 -8.29014 -8.21310 -7.02702 -6.34091 -3.07244 -0.01000 0.33953 1.53735 1.86252 2.78272 3.05538 3.42219 3.47696 3.52870 3.58278 3.68099 3.74807 3.84784 4.14235 4.32520 4.65294 4.68598 4.72945 4.84802 4.92108 4.94637 5.06187 5.07841 5.17459 5.20257 5.29909 5.40714 5.46630 5.50786 5.53325 5.59705 5.69909 5.79982 5.95087 5.99201 6.04338 6.29201 6.51484 6.58685 6.61844 6.85234 6.88777 6.94163 7.22599 7.61914 7.75799 8.38056 8.46052 9.08840 9.66153 10.32574 11.17190 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.002542 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.241283 B =11012.453075 C =11447.216559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.189 4.189 3 C 0.186 3.814 4 N -0.436 5.436 5 C 0.313 3.687 6 C -0.279 4.279 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.601 5.601 10 C 0.063 3.937 11 C 0.126 3.874 12 H 0.110 0.890 13 C -0.137 4.137 14 C 0.110 3.890 15 N -0.607 5.607 16 C -0.338 4.338 17 H 0.079 0.921 18 C -0.018 4.018 19 N -0.910 5.910 20 Si 1.062 2.938 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.299 1.299 24 C 0.135 3.865 25 C 0.110 3.890 26 N -0.314 5.314 27 N -0.305 5.305 28 C 0.158 3.842 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.045 0.955 43 H 0.222 0.778 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.200 -9.166 -5.691 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.195 4.195 3 C 0.003 3.997 4 N -0.145 5.145 5 C 0.081 3.919 6 C -0.295 4.295 7 C 0.383 3.617 8 O -0.406 6.406 9 N -0.333 5.333 10 C -0.080 4.080 11 C 0.022 3.978 12 H 0.128 0.872 13 C -0.176 4.176 14 C -0.016 4.016 15 N -0.335 5.335 16 C -0.464 4.464 17 H 0.096 0.904 18 C -0.219 4.219 19 N -0.550 5.550 20 Si 0.896 3.104 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.227 1.227 24 C 0.007 3.993 25 C -0.070 4.070 26 N -0.135 5.135 27 N -0.073 5.073 28 C 0.022 3.978 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.201 0.799 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.238 0.762 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -30.189 -8.071 -6.553 31.929 hybrid contribution -0.977 -1.040 1.082 1.791 sum -31.166 -9.111 -5.471 32.929 Atomic orbital electron populations 1.20626 0.87363 1.04106 1.03452 1.20623 0.99224 0.92343 1.07305 1.23635 0.88975 0.98627 0.88474 1.68357 1.08459 1.23975 1.13722 1.20379 0.93150 0.81170 0.97213 1.19461 0.90146 0.93672 1.26228 1.16769 0.81234 0.87002 0.76659 1.90831 1.83259 1.16718 1.49784 1.47462 1.05434 1.09918 1.70522 1.22268 1.03020 0.82336 1.00396 1.22515 0.85238 0.93594 0.96406 0.87235 1.22908 0.96028 1.01603 0.97049 1.21719 0.94506 0.98082 0.87248 1.44714 1.14490 1.67778 1.06544 1.19936 0.90667 1.42185 0.93638 0.90353 1.25638 0.90752 1.01348 1.04144 1.70935 1.23215 1.37102 1.23772 0.83897 0.73793 0.77156 0.75600 1.21952 1.22009 1.22747 1.21813 0.85593 0.95671 0.96184 1.25206 0.96987 0.92833 0.92021 1.77638 0.96354 1.08384 1.31170 1.47067 1.06117 1.08020 1.46050 1.21960 0.79394 1.01268 0.95150 0.90176 0.90045 0.90710 0.79930 0.92044 0.90866 0.89798 0.91149 0.91096 0.94750 0.93824 0.92644 0.95266 0.93712 0.76215 0.80100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.14 10.03 36.01 0.36 0.23 16 2 C -0.19 -1.00 5.86 -104.87 -0.61 -1.62 16 3 C 0.19 1.44 10.97 -17.04 -0.19 1.25 16 4 N -0.44 -5.77 10.29 -12.00 -0.12 -5.90 16 5 C 0.31 4.36 7.74 -155.84 -1.21 3.15 16 6 C -0.28 -4.06 5.96 -104.65 -0.62 -4.68 16 7 C 0.59 10.23 7.63 -12.89 -0.10 10.14 16 8 O -0.53 -11.12 16.18 5.18 0.08 -11.03 16 9 N -0.60 -9.36 2.91 -172.92 -0.50 -9.86 16 10 C 0.06 0.70 7.23 59.85 0.43 1.13 16 11 C 0.13 2.34 3.44 -65.67 -0.23 2.12 16 12 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 13 C -0.14 -2.46 6.49 -24.90 -0.16 -2.62 16 14 C 0.11 2.48 4.85 -3.06 -0.01 2.47 16 15 N -0.61 -15.41 3.38 -169.93 -0.57 -15.98 16 16 C -0.34 -9.90 10.41 -15.06 -0.16 -10.06 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 18 C -0.02 -0.53 5.44 -17.43 -0.09 -0.62 16 19 N -0.91 -28.77 13.70 55.49 0.76 -28.01 16 20 Si 1.06 27.41 24.66 -169.99 -4.19 23.22 16 21 H -0.29 -7.06 6.38 56.52 0.36 -6.70 16 22 H -0.29 -7.30 6.49 56.52 0.37 -6.93 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 C 0.13 2.82 6.79 -2.41 -0.02 2.80 16 25 C 0.11 1.24 9.82 -17.12 -0.17 1.07 16 26 N -0.31 -3.66 12.58 30.77 0.39 -3.27 16 27 N -0.30 -3.42 3.86 -11.98 -0.05 -3.46 16 28 C 0.16 1.09 10.94 -16.45 -0.18 0.91 16 29 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.08 0.03 8.10 -51.93 -0.42 -0.39 16 31 H 0.07 0.03 8.09 -51.93 -0.42 -0.39 16 32 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.06 0.58 7.26 -51.93 -0.38 0.20 16 34 H 0.07 0.65 5.44 -51.93 -0.28 0.37 16 35 H 0.08 0.94 6.36 -51.93 -0.33 0.61 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.11 6.48 -51.93 -0.34 0.78 16 38 H 0.04 0.83 4.34 -51.93 -0.23 0.60 16 39 H 0.04 1.02 6.90 -51.93 -0.36 0.67 16 40 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 41 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.22 1.78 4.46 -52.49 -0.23 1.55 16 44 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -39.61 349.87 -7.37 -46.98 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.48 Total: -3.62 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.96 Total: 5.66 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.10 Total: -66.47 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 27.41 SS G_CDS: -4.19 Total: 23.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -39.61 -7.37 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033470951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.934 kcal (2) G-P(sol) polarization free energy of solvation -39.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds